Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000155g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 3.1e-86 322.0 192 100.0
Peaxi162Scf00673g00126 Petunia axillaris HOM05D005935 ORTHO05D007012 9.6e-72 273.9 196 86.2
Solyc01g100330.3 Solanum lycopersicum HOM05D005935 ORTHO05D007012 1.3e-71 273.5 203 82.8
Sopen01g043840 Solanum pennellii HOM05D005935 ORTHO05D007012 1.3e-71 273.5 203 82.8
PGSC0003DMG400002806 Solanum tuberosum HOM05D005935 ORTHO05D007012 2.8e-71 272.3 203 82.3
CAN.G1715.16 Capsicum annuum HOM05D005935 ORTHO05D007012 8.2e-71 270.8 203 83.3
Cc02_g34830 Coffea canephora HOM05D005935 ORTHO05D007012 1.4e-70 270.0 203 82.3
Dinv24425 Davidia involucrata HOM05D005935 ORTHO05D007012 1.7e-68 263.1 205 79.5
SalBow3G1520 Salvia bowleyana HOM05D005935 ORTHO05D007012 1.7e-68 263.1 203 80.3
Lsat_1_v5_gn_5_102820 Lactuca sativa HOM05D005935 ORTHO05D007012 4.9e-68 261.5 203 81.3
MSTRG.27950 Avicennia marina HOM05D005935 ORTHO05D007012 1.1e-67 260.4 204 81.4
SGA_v2.0_scaffold81G26126 Striga asiatica HOM05D005935 ORTHO05D007012 1.4e-67 260.0 204 80.9
Ah.06g188880 Amaranthus hybridus HOM05D005935 ORTHO05D007012 2.5e-67 259.2 204 78.9
SGA_v2.0_scaffold80G25879 Striga asiatica HOM05D005935 ORTHO05D007012 4.2e-67 258.5 204 79.4
Nitab4.5_0013342g0020 Nicotiana tabacum HOM05D000001 ORTHO05D004269 3.5e-66 255.4 207 80.7
GSVIVG01031220001 Vitis vinifera HOM05D005935 ORTHO05D007012 3.5e-66 255.4 205 78.5
Migut.N01391 Erythranthe guttata HOM05D005935 ORTHO05D007012 1.3e-65 253.4 205 80.0
EL10Ac4g09829 Beta vulgaris HOM05D005935 ORTHO05D007012 1.8e-65 253.1 205 78.5
Sed0001365 Sechium edule HOM05D005935 ORTHO05D007012 1.8e-65 253.1 203 75.9
unitig_21.g20172 Utricularia gibba HOM05D005935 ORTHO05D007012 2.3e-65 252.7 204 77.5
TAR362G1094 Trochodendron aralioides HOM05D005935 ORTHO05D007012 3.9e-65 251.9 205 78.5
Os03g0831900 Oryza sativa ssp. japonica HOM05D005935 ORTHO05D007012 1.1e-64 250.4 202 77.7
ClCG02G015080 Citrullus lanatus HOM05D005935 ORTHO05D007012 1.9e-64 249.6 203 75.9
MELO3C004198.2 Cucumis melo HOM05D005935 ORTHO05D007012 1.9e-64 249.6 203 75.9
CiPaw.07G028100 Carya illinoinensis HOM05D005935 ORTHO05D007012 2.5e-64 249.2 204 77.5
CsaV3_2G006940 Cucumis sativus L. HOM05D005935 ORTHO05D007012 9.7e-64 247.3 203 74.9
Eucgr.H03282 Eucalyptus grandis HOM05D005935 ORTHO05D007012 9.7e-64 247.3 204 75.0
MD04G1195100 Malus domestica HOM05D005935 ORTHO05D007012 1.6e-63 246.5 202 77.2
Prupe.6G314900 Prunus persica HOM05D005935 ORTHO05D007012 1.6e-63 246.5 204 77.0
Nitab4.5_0000368g0260 Nicotiana tabacum HOM05D005935 ORTHO05D007012 2.8e-63 245.7 191 74.9
Aqoxy2G00839 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 4.8e-63 245.0 205 77.1
Haze_04079 Corylus avellana HOM05D005935 ORTHO05D007012 1.4e-62 243.4 195 77.9
RcHm_v2.0_Chr3g0456881 Rosa chinensis HOM05D005935 ORTHO05D007012 1.4e-62 243.4 201 78.1
Hma1.2p1_0008F-1.1_g005750 Hydrangea macrophylla HOM05D005935 ORTHO05D007012 2.4e-62 242.7 204 75.5
Manes.09G175700 Manihot esculenta HOM05D005935 ORTHO05D007012 3.1e-62 242.3 202 78.2
Nn3g21642 Nelumbo nucifera HOM05D005935 ORTHO05D007012 4.1e-62 241.9 197 76.6
Phvul.001G225500 Phaseolus vulgaris HOM05D005935 ORTHO05D007012 4.1e-62 241.9 204 75.5
Zm00001eb121760 Zea mays HOM05D005935 ORTHO05D007012 4.1e-62 241.9 201 73.6
BraA05t22944Z Brassica rapa HOM05D002110 ORTHO05D007012 5.3e-62 241.5 199 75.4
PGR031G1309 Punica granatum HOM05D005935 ORTHO05D007012 1.2e-61 240.4 200 74.5
vmacro01555 Vaccinium macrocarpon HOM05D005935 ORTHO05D007012 1.2e-61 240.4 247 64.0
Glyma.19G228900 Glycine max HOM05D005935 ORTHO05D007012 1.5e-61 240.0 203 74.9
MD12G1207200 Malus domestica HOM05D005935 ORTHO05D007012 1.5e-61 240.0 202 76.2
Aqoxy4G02482 Aquilegia oxysepala HOM05D005935 ORTHO05D007012 2.0e-61 239.6 205 76.1
BcaC05g30089 Brassica carinata HOM05D005935 ORTHO05D007012 2.0e-61 239.6 199 73.9
BolC5t34806H Brassica oleracea HOM05D002110 ORTHO05D007012 3.4e-61 238.8 193 75.1
Ca_09298_v3 Cicer arietinum L. HOM05D005935 ORTHO05D007012 5.9e-61 238.0 203 73.9
TAR636G0846 Trochodendron aralioides HOM05D005935 ORTHO05D007012 5.9e-61 238.0 204 76.0
Gohir.A08G206600 Gossypium hirsutum HOM05D005935 ORTHO05D007012 2.9e-60 235.7 201 75.1
arahy.Tifrunner.gnm1.ann1.I9BDFC Arachis hypogaea HOM05D005935 ORTHO05D007012 8.5e-60 234.2 204 73.5
Lalb_Chr18g0046051 Lupinus albus HOM05D005935 ORTHO05D007012 8.5e-60 234.2 205 73.7
arahy.Tifrunner.gnm1.ann1.G5WI6L Arachis hypogaea HOM05D005935 ORTHO05D007012 1.1e-59 233.8 204 74.0
arahy.Tifrunner.gnm1.ann1.H1X696 Arachis hypogaea HOM05D005935 ORTHO05D007012 1.1e-59 233.8 204 74.0
Gohir.D08G223300 Gossypium hirsutum HOM05D005935 ORTHO05D007012 1.1e-59 233.8 201 74.6
Gorai.004G237200 Gossypium raimondii HOM05D005935 ORTHO05D007012 1.1e-59 233.8 201 74.6
VMungo1383G1193 Vigna mungo HOM05D005935 ORTHO05D007012 1.1e-59 233.8 200 74.5
Atru.chr2.148 Acer truncatum HOM05D005935 ORTHO05D007012 1.4e-59 233.4 205 73.2
C05p61480 Brassica napus HOM05D002110 ORTHO05D007012 1.4e-59 233.4 200 75.0
Glyma.03G231900 Glycine max HOM05D005935 ORTHO05D007012 1.4e-59 233.4 203 74.4
CARHR080230 Cardamine hirsuta HOM05D005935 ORTHO05D007012 1.9e-59 233.0 200 75.5
FvH4_6g07240 Fragaria vesca HOM05D005935 ORTHO05D007012 1.9e-59 233.0 195 77.4
arahy.Tifrunner.gnm1.ann1.7UDZ1N Arachis hypogaea HOM05D005935 ORTHO05D007012 2.5e-59 232.6 204 71.6
HanXRQChr10g0299201 Helianthus annuus HOM05D005935 ORTHO05D007012 2.5e-59 232.6 204 74.5
Actinidia16851 Actinidia chinensis HOM05D005935 ORTHO05D007012 4.2e-59 231.9 194 77.3
Medtr7g112060 Medicago truncatula HOM05D005935 ORTHO05D007012 7.2e-59 231.1 199 72.9
COL.COLO4_04140 Corchorus olitorius HOM05D005935 ORTHO05D007012 9.4e-59 230.7 201 73.1
SEGI_34613 Sequoiadendron giganteum HOM05D005935 ORTHO05D007012 9.4e-59 230.7 204 70.1
THA.LOC104802776 Tarenaya hassleriana HOM05D005935 ORTHO05D007012 9.4e-59 230.7 199 72.9
ECA234G4853 Erigeron canadensis HOM05D005935 ORTHO05D007012 1.6e-58 229.9 200 74.0
AT3G05760 Arabidopsis thaliana HOM05D005935 ORTHO05D007012 2.1e-58 229.6 199 72.9
Carub.0003s0513 Capsella rubella HOM05D005935 ORTHO05D007012 3.6e-58 228.8 199 72.4
Sp3g04650 Schrenkiella parvula HOM05D005935 ORTHO05D007012 4.6e-58 228.4 199 71.9
CANSAT54G1507 Cannabis sativa HOM05D005935 ORTHO05D007012 7.9e-58 227.6 206 74.3
CDE11G0767 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 7.9e-58 227.6 204 74.0
ATR0767G209 Amborella trichopoda HOM05D005935 ORTHO05D007012 1.0e-57 227.3 204 74.0
Thecc.05G321000 Theobroma cacao HOM05D005935 ORTHO05D007012 1.0e-57 227.3 201 73.1
Cpa.g.sc48.144 Carica papaya HOM05D005935 ORTHO05D007012 1.8e-57 226.5 201 73.1
AUR62000683 Chenopodium quinoa HOM05D005935 ORTHO05D007012 1.8e-57 226.5 204 72.5
Lj1g0021681 Lotus japonicus HOM05D005935 ORTHO05D007012 1.8e-57 226.5 201 72.6
TWI36G1229 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 1.8e-57 226.5 201 75.6
AL3G16500 Arabidopsis lyrata HOM05D005935 ORTHO05D007012 2.3e-57 226.1 199 71.4
CDE05G0147 Ceratophyllum demersum HOM05D005935 ORTHO05D007012 3.0e-57 225.7 204 73.5
AUR62005273 Chenopodium quinoa HOM05D005935 ORTHO05D007012 3.0e-57 225.7 185 77.8
FAN05G5324 Fragaria x ananassa HOM05D005935 ORTHO05D007012 6.7e-57 224.6 204 73.5
Lalb_Chr04g0260471 Lupinus albus HOM05D005935 ORTHO05D007012 6.7e-57 224.6 205 64.9
FAN14G3557 Fragaria x ananassa HOM05D005935 ORTHO05D007012 8.8e-57 224.2 204 73.5
QL03p018299 Quercus lobata HOM05D005935 ORTHO05D007012 1.5e-56 223.4 203 72.4
Sc09g0002670 Simmondsia chinensis HOM05D005935 ORTHO05D007012 1.5e-56 223.4 204 71.1
FAN02G1619 Fragaria x ananassa HOM05D005935 ORTHO05D007012 1.9e-56 223.0 204 73.0
Psat3g013040 Pisum sativum HOM05D005935 ORTHO05D007012 1.9e-56 223.0 198 71.7
Rhsim11G0094200 Rhododendron simsii HOM05D005935 ORTHO05D007012 3.3e-56 222.2 203 62.1
BcaC05g29782 Brassica carinata HOM05D005935 ORTHO05D007012 5.7e-56 221.5 199 69.3
QL01p019294 Quercus lobata HOM05D005935 ORTHO05D007012 1.3e-55 220.3 199 73.9
PSO170G3047 Papaver somniferum HOM05D005935 ORTHO05D007012 2.8e-55 219.2 200 72.5
PSO357G0321 Papaver somniferum HOM05D005935 ORTHO05D007012 2.8e-55 219.2 200 72.5
TWI56G1463 Tripterygium wilfordii HOM05D005935 ORTHO05D007012 8.2e-55 217.6 201 74.1
PSO478G5244 Papaver somniferum HOM05D005935 ORTHO05D007012 6.9e-54 214.5 204 70.6
Thhalv10022198m.g Eutrema salsugineum HOM05D005935 ORTHO05D007012 2.6e-53 212.6 275 55.3
Pp3c4_20180 Physcomitrium patens HOM05D005935 ORTHO05D007012 5.9e-53 211.5 200 70.0
CSS0009551 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.3e-52 210.3 189 72.5
Ciclev10002528m.g Citrus clementina HOM05D005935 ORTHO05D007012 1.7e-52 209.9 202 70.8
Mapoly0111s0002 Marchantia polymorpha HOM05D005935 ORTHO05D007012 1.7e-52 209.9 206 68.0
TPR.G1633 Trifolium pratense HOM05D005935 ORTHO05D007012 3.8e-52 208.8 198 68.7
DCAR_005416 Daucus carota HOM05D005935 ORTHO05D007012 6.5e-52 208.0 170 79.4
Potri.013G010300 Populus trichocarpa HOM05D005935 ORTHO05D007012 6.5e-52 208.0 193 73.1
Aa31LG5G16170 Aethionema arabicum HOM05D005935 ORTHO05D007012 1.6e-50 203.4 211 55.9
FAN09G4449 Fragaria x ananassa HOM05D005935 ORTHO05D007012 4.7e-50 201.8 145 75.9
CSS0047945 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 6.1e-50 201.4 161 78.9
Hund21747 Selenicereus undatus HOM05D005935 ORTHO05D007012 3.0e-49 199.1 192 71.4
Duzib128G1094 Durio zibethinus HOM05D005935 ORTHO05D007012 2.0e-48 196.4 152 69.1
HPP92_015241 Vanilla planifolia HOM05D005935 ORTHO05D007012 1.7e-47 193.4 195 68.2
Nitab4.5_0007747g0010 Nicotiana tabacum HOM05D005935 ORTHO05D007012 6.3e-47 191.4 123 98.4
Hund07136 Selenicereus undatus HOM05D005935 ORTHO05D007012 8.2e-47 191.0 296 50.7
AagrBONN_evm.TU.Sc2ySwM_344.1201 Anthoceros agrestis HOM05D005935 ORTHO05D007012 2.9e-44 182.6 145 62.8
AagrBONN_evm.TU.Sc2ySwM_228.1845 Anthoceros agrestis HOM05D005935 ORTHO05D007012 3.6e-42 175.6 142 61.3
Oeu013219.2 Olea europaea HOM05D005935 ORTHO05D007012 3.6e-42 175.6 223 60.5
CSS0024691 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 1.8e-41 173.3 147 66.7
SMO201G0167 Selaginella moellendorffii HOM05D005935 ORTHO05D007012 3.9e-41 172.2 202 57.9
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 6.7e-41 171.4 129 66.7
Lj5A336T44 Lonicera japonica HOM05D005935 ORTHO05D007012 5.7e-40 168.3 112 77.7
CSS0031844 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 4.2e-35 152.1 125 66.4
Pp3c12_7700 Physcomitrium patens HOM05D005935 ORTHO05D007012 1.2e-34 150.6 173 66.5
CSS0034550 Camellia sinensis var. sinensis HOM05D005935 ORTHO05D007012 5.7e-32 141.7 200 58.5
RcHm_v2.0_Chr7g0179971 Rosa chinensis HOM05D005935 ORTHO05D007012 9.7e-32 141.0 143 58.7
Cre07.g341650 Chlamydomonas reinhardtii HOM05D005935 ORTHO05D007012 1.6e-26 123.6 226 47.8
Sabra13G0008800 Salix brachista HOM05D005935 ORTHO05D007012 2.7e-26 122.9 215 41.4
MCO03G264 Micromonas commoda HOM05D005935 ORTHO05D007012 8.8e-25 117.9 208 48.6
Actinidia35528 Actinidia chinensis HOM05D005935 ORTHO05D007012 2.0e-24 116.7 284 42.3
CBR_g38440 Chara braunii HOM05D005935 ORTHO05D007012 7.5e-24 114.8 198 43.4
Zm00001eb307900 Zea mays HOM05D005935 ORTHO05D007012 1.9e-19 100.1 96 76.0
PRCOL_00000245 Prasinoderma coloniale HOM05D005935 ORTHO05D007012 3.0e-17 92.8 207 37.7
Zm00001eb114570 Zea mays HOM05D005935 ORTHO05D007012 1.5e-16 90.5 91 75.8
FAN04G2955 Fragaria x ananassa HOM05D005935 ORTHO05D007012 9.8e-16 87.8 122 45.9
Zm00001eb180860 Zea mays HOM05D005935 ORTHO05D007012 4.3e-11 72.4 46 78.3
Cfa024511 Carpinus fangiana HOM05D005935 ORTHO05D007012 8.3e-07 58.2 159 27.7


User provided reference genes

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