Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000061g0390 Nicotiana tabacum HOM05D003924 ORTHO05D005216 0.0e+00 1649.0 886 100.0
CAN.G742.17 Capsicum annuum HOM05D003924 ORTHO05D005216 0.0e+00 1223.8 922 77.8
Sopen04g020010 Solanum pennellii HOM05D003924 ORTHO05D005216 0.0e+00 1204.1 927 76.3
Lj8C94T13 Lonicera japonica HOM05D003924 ORTHO05D005216 2.3e-293 1012.3 908 67.3
Cc09_g02440 Coffea canephora HOM05D003924 ORTHO05D005216 3.1e-290 1001.9 926 65.3
Dinv17348 Davidia involucrata HOM05D003924 ORTHO05D005216 6.4e-288 994.2 925 65.9
DCAR_027685 Daucus carota HOM05D003924 ORTHO05D005216 9.3e-287 990.3 924 64.6
Cfa001582 Carpinus fangiana HOM05D003924 ORTHO05D005216 9.6e-284 980.3 939 64.5
Hma1.2p1_3877F.1_g337880 Hydrangea macrophylla HOM05D003924 ORTHO05D005216 3.7e-283 978.4 923 65.9
MSTRG.9355 Avicennia marina HOM05D003924 ORTHO05D005216 6.9e-282 974.2 930 61.4
ClCG09G020390 Citrullus lanatus HOM05D003924 ORTHO05D005216 3.4e-281 971.8 927 62.9
MD01G1113500 Malus domestica HOM05D003924 ORTHO05D005216 5.5e-279 964.5 929 62.3
vmacro17942 Vaccinium macrocarpon HOM05D003924 ORTHO05D005216 5.5e-279 964.5 946 64.1
Potri.010G216100 Populus trichocarpa HOM05D003924 ORTHO05D005216 4.6e-278 961.4 924 65.0
Thecc.10G066000 Theobroma cacao HOM05D003924 ORTHO05D005216 7.9e-278 960.7 937 63.9
VMungo1309G1679 Vigna mungo HOM05D003924 ORTHO05D005216 1.3e-277 959.9 928 62.5
TAR623G0957 Trochodendron aralioides HOM05D003924 ORTHO05D005216 1.8e-277 959.5 935 64.3
Prupe.2G220200 Prunus persica HOM05D003924 ORTHO05D005216 2.3e-277 959.1 935 61.6
SalBow1G8295 Salvia bowleyana HOM05D003924 ORTHO05D005216 2.3e-277 959.1 924 64.6
Migut.D01216 Erythranthe guttata HOM05D003924 ORTHO05D005216 6.7e-277 957.6 926 63.3
MELO3C025497.2 Cucumis melo HOM05D003924 ORTHO05D005216 8.7e-277 957.2 924 63.6
CsaV3_5G026020 Cucumis sativus L. HOM05D003924 ORTHO05D005216 1.5e-276 956.4 925 63.7
CSS0019567 Camellia sinensis var. sinensis HOM05D003924 ORTHO05D005216 2.5e-276 955.7 925 63.6
Actinidia03018 Actinidia chinensis HOM05D003924 ORTHO05D005216 2.1e-275 952.6 924 63.6
GSVIVG01016353001 Vitis vinifera HOM05D003924 ORTHO05D005216 6.9e-274 947.6 937 64.0
COL.COLO4_23765 Corchorus olitorius HOM05D003924 ORTHO05D005216 3.4e-273 945.3 938 63.1
Sed0000671 Sechium edule HOM05D003924 ORTHO05D005216 2.9e-272 942.2 932 62.4
Atru.chr2.540 Acer truncatum HOM05D003924 ORTHO05D005216 3.8e-272 941.8 928 63.4
RcHm_v2.0_Chr3g0482831 Rosa chinensis HOM05D003924 ORTHO05D005216 5.0e-272 941.4 924 62.7
FAN17G0927 Fragaria x ananassa HOM05D003924 ORTHO05D005216 1.4e-271 939.9 924 62.8
ECA238G4557 Erigeron canadensis HOM05D003924 ORTHO05D005216 1.9e-271 939.5 923 62.1
Oeu033837.1 Olea europaea HOM05D003924 ORTHO05D005216 2.5e-271 939.1 923 63.4
HanXRQChr07g0200911 Helianthus annuus HOM05D003924 ORTHO05D005216 3.2e-271 938.7 934 61.5
FAN22G0546 Fragaria x ananassa HOM05D003924 ORTHO05D005216 4.2e-271 938.3 924 62.8
Duzib114G0370 Durio zibethinus HOM05D003924 ORTHO05D005216 5.5e-271 937.9 981 58.8
Duzib128G0369 Durio zibethinus HOM05D003924 ORTHO05D005216 1.6e-270 936.4 932 63.0
Phvul.009G216500 Phaseolus vulgaris HOM05D003924 ORTHO05D005216 1.6e-270 936.4 928 61.9
FvH4_4g12630 Fragaria vesca HOM05D003924 ORTHO05D005216 2.1e-270 936.0 934 62.3
Potri.008G045400 Populus trichocarpa HOM05D003924 ORTHO05D005216 6.1e-270 934.5 925 64.2
Sabra08G0031600 Salix brachista HOM05D003924 ORTHO05D005216 6.1e-270 934.5 939 63.5
Ciclev10018539m.g Citrus clementina HOM05D003924 ORTHO05D005216 1.8e-269 932.9 983 61.0
Solyc04g049770.4 Solanum lycopersicum HOM05D003924 ORTHO05D005216 5.1e-269 931.4 682 75.5
arahy.Tifrunner.gnm1.ann1.VLH7KT Arachis hypogaea HOM05D003924 ORTHO05D005216 5.7e-268 927.9 932 60.7
HanXRQChr14g0460881 Helianthus annuus HOM05D003924 ORTHO05D005216 7.4e-268 927.5 924 61.4
CiPaw.01G277600 Carya illinoinensis HOM05D003924 ORTHO05D005216 9.7e-268 927.2 924 63.2
Eucgr.G02792 Eucalyptus grandis HOM05D003924 ORTHO05D005216 1.3e-267 926.8 926 62.3
Glyma.09G087900 Glycine max HOM05D003924 ORTHO05D005216 1.6e-267 926.4 928 61.4
Lalb_Chr11g0073411 Lupinus albus HOM05D003924 ORTHO05D005216 4.8e-267 924.9 930 59.7
TWI15G1255 Tripterygium wilfordii HOM05D003924 ORTHO05D005216 1.8e-266 922.9 932 61.1
Lj6g0026487 Lotus japonicus HOM05D003924 ORTHO05D005216 3.1e-266 922.2 937 62.0
Nn2g10624 Nelumbo nucifera HOM05D003924 ORTHO05D005216 1.2e-265 920.2 941 60.9
MD07G1181100 Malus domestica HOM05D003924 ORTHO05D005216 3.4e-265 918.7 926 62.0
Lalb_Chr08g0233271 Lupinus albus HOM05D003924 ORTHO05D005216 6.5e-264 914.4 931 60.8
Sabra10G0167200 Salix brachista HOM05D003924 ORTHO05D005216 8.5e-264 914.1 953 59.0
Ca_02521_v3 Cicer arietinum L. HOM05D003924 ORTHO05D005216 1.4e-263 913.3 923 60.6
MBI19_g06147_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 1.4e-263 913.3 922 62.7
Aqoxy6G01538 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 2.5e-263 912.5 931 61.3
Medtr2g048630 Medicago truncatula HOM05D003924 ORTHO05D005216 4.6e-262 908.3 921 60.4
Gorai.010G203700 Gossypium raimondii HOM05D003924 ORTHO05D005216 7.9e-262 907.5 941 62.1
FAN07G1557 Fragaria x ananassa HOM05D003924 ORTHO05D005216 4.4e-260 901.7 923 61.1
Gohir.A06G179002 Gossypium hirsutum HOM05D003924 ORTHO05D005216 8.2e-259 897.5 937 61.9
Manes.07G101600 Manihot esculenta HOM05D003924 ORTHO05D005216 1.2e-257 893.6 942 60.3
unitig_899.g14816 Utricularia gibba HOM05D003924 ORTHO05D005216 1.2e-257 893.6 919 58.9
PGR142G3475 Punica granatum HOM05D003924 ORTHO05D005216 3.4e-257 892.1 941 60.3
Hund16198 Selenicereus undatus HOM05D003924 ORTHO05D005216 1.4e-255 886.7 926 60.9
Gohir.D06G174100 Gossypium hirsutum HOM05D003924 ORTHO05D005216 1.9e-255 886.3 939 61.1
PSO339G1038 Papaver somniferum HOM05D003924 ORTHO05D005216 2.1e-254 882.9 941 58.7
THA.LOC104809987 Tarenaya hassleriana HOM05D003924 ORTHO05D005216 2.1e-254 882.9 939 57.4
TPR.G31980 Trifolium pratense HOM05D003924 ORTHO05D005216 3.6e-254 882.1 900 60.8
PSO384G1475 Papaver somniferum HOM05D003924 ORTHO05D005216 3.0e-253 879.0 941 58.8
Thhalv10016159m.g Eutrema salsugineum HOM05D003924 ORTHO05D005216 1.1e-250 870.5 926 58.1
QL08p057163 Quercus lobata HOM05D003924 ORTHO05D005216 1.7e-248 863.2 1161 51.0
Lsat_1_v5_gn_2_116140 Lactuca sativa HOM05D003924 ORTHO05D005216 3.8e-248 862.1 927 59.0
Sp4g21570 Schrenkiella parvula HOM05D003924 ORTHO05D005216 6.1e-246 854.7 923 56.9
SpUn0018_0100 Schrenkiella parvula HOM05D003924 ORTHO05D005216 6.1e-246 854.7 923 56.9
EL10Ac2g04495 Beta vulgaris HOM05D003924 ORTHO05D005216 2.3e-245 852.8 1002 56.1
AUR62023249 Chenopodium quinoa HOM05D003924 ORTHO05D005216 2.3e-245 852.8 933 57.7
arahy.Tifrunner.gnm1.ann1.MQZ1GR Arachis hypogaea HOM05D003924 ORTHO05D005216 2.6e-244 849.4 932 57.7
Rhsim03G0121700 Rhododendron simsii HOM05D003924 ORTHO05D005216 1.7e-243 846.7 926 59.5
Aa31LG5G20240 Aethionema arabicum HOM05D003924 ORTHO05D005216 3.5e-241 839.0 921 57.1
Zm00001eb247890 Zea mays HOM05D003924 ORTHO05D005216 1.0e-240 837.4 939 57.2
CARHR134000 Cardamine hirsuta HOM05D003924 ORTHO05D005216 2.2e-240 836.3 924 57.5
Carub.0004s2131 Capsella rubella HOM05D003924 ORTHO05D005216 6.5e-240 834.7 926 57.7
AL4G36570 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 5.5e-239 831.6 925 58.5
Glyma.15G194000 Glycine max HOM05D003924 ORTHO05D005216 6.1e-238 828.2 854 60.0
BcaB01g03607 Brassica carinata HOM05D003924 ORTHO05D005216 8.0e-238 827.8 924 54.9
AT2G39260 Arabidopsis thaliana HOM05D003924 ORTHO05D005216 1.0e-237 827.4 925 57.6
C03p26070 Brassica napus HOM05D003924 ORTHO05D005216 8.8e-237 824.3 926 56.3
BolC3t14991H Brassica oleracea HOM05D003924 ORTHO05D005216 2.0e-236 823.2 926 56.3
BraA03t11433Z Brassica rapa HOM05D003924 ORTHO05D005216 2.6e-236 822.8 926 56.3
Zm00001eb185340 Zea mays HOM05D003924 ORTHO05D005216 2.6e-236 822.8 935 57.6
A03p21980 Brassica napus HOM05D003924 ORTHO05D005216 9.8e-236 820.8 926 56.2
BcaB01g03658 Brassica carinata HOM05D003924 ORTHO05D005216 6.3e-235 818.1 926 56.0
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 2.3e-229 799.7 909 58.9
CDE01G0014 Ceratophyllum demersum HOM05D003924 ORTHO05D005216 2.8e-227 792.7 923 56.3
ATR0810G286 Amborella trichopoda HOM05D003924 ORTHO05D005216 3.1e-226 789.3 946 57.4
FAN12G0529 Fragaria x ananassa HOM05D003924 ORTHO05D005216 5.4e-226 788.5 794 62.1
Nitab4.5_0000561g0080 Nicotiana tabacum HOM05D003924 ORTHO05D005216 1.2e-222 777.3 460 95.9
Mapoly0202s0011 Marchantia polymorpha HOM05D003924 ORTHO05D005216 4.9e-219 765.4 963 53.3
Rhsim09G0154800 Rhododendron simsii HOM05D003924 ORTHO05D005216 7.0e-218 761.5 964 53.2
AUR62023203 Chenopodium quinoa HOM05D003924 ORTHO05D005216 3.2e-210 736.1 933 51.3
Duzib106G1600 Durio zibethinus HOM05D003924 ORTHO05D005216 6.6e-208 728.4 936 53.8
Pp3c11_19990 Physcomitrium patens HOM05D003924 ORTHO05D005216 2.1e-206 723.4 961 53.2
SMO116G0081 Selaginella moellendorffii HOM05D003924 ORTHO05D005216 3.4e-204 716.1 940 52.0
Peaxi162Scf01024g00323 Petunia axillaris HOM05D003924 ORTHO05D005216 7.5e-204 714.9 463 87.9
SEGI_38774 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.1e-197 694.5 771 55.1
Cpa.g.sc1.275 Carica papaya HOM05D003924 ORTHO05D005216 2.1e-190 670.2 461 75.1
Haze_16947 Corylus avellana HOM05D003924 ORTHO05D005216 5.2e-189 665.6 465 80.2
Sc10g0000900 Simmondsia chinensis HOM05D003924 ORTHO05D005216 2.5e-183 646.7 461 79.6
Psat1g019320 Pisum sativum HOM05D003924 ORTHO05D005216 1.3e-174 617.8 825 50.7
HPP92_017237 Vanilla planifolia HOM05D003924 ORTHO05D005216 4.2e-170 602.8 460 74.8
CBR_g19436 Chara braunii HOM05D003924 ORTHO05D005216 6.7e-168 595.5 968 43.2
BcaB06g29071 Brassica carinata HOM05D003924 ORTHO05D005216 2.8e-158 563.5 460 68.3
SHI16914 Sapria himalayana HOM05D003924 ORTHO05D005216 7.6e-156 555.4 470 63.8
Aqoxy298s003 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 4.5e-148 529.6 302 86.8
Peaxi162Scf01024g00324 Petunia axillaris HOM05D003924 ORTHO05D005216 1.9e-138 497.7 339 80.5
SEGI_19841 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 6.7e-136 489.2 638 49.4
HanXRQChr09g0240751 Helianthus annuus HOM05D003924 ORTHO05D005216 1.0e-112 412.1 307 71.3
HanXRQChr03g0077291 Helianthus annuus HOM05D003924 ORTHO05D005216 1.1e-98 365.5 380 61.6
C04p67110 Brassica napus HOM05D003924 ORTHO05D005216 1.1e-96 359.0 805 37.3
Psat4g181560 Pisum sativum HOM05D003924 ORTHO05D005216 8.3e-86 322.8 181 86.2
Psat0s6336g0040 Pisum sativum HOM05D003924 ORTHO05D005216 3.2e-85 320.9 181 84.5
Psat4g181480 Pisum sativum HOM05D003924 ORTHO05D005216 3.2e-85 320.9 181 84.5
FAN12G0118 Fragaria x ananassa HOM05D003924 ORTHO05D005216 4.4e-79 300.4 323 58.5
BolC4t28212H Brassica oleracea HOM05D003924 ORTHO05D005216 2.1e-73 281.6 756 33.9
Cre17.g729250 Chlamydomonas reinhardtii HOM05D003924 ORTHO05D005216 6.2e-73 280.0 496 41.3
Os02g0631500 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 2.0e-71 275.0 365 52.6
Lsat_1_v5_gn_4_181660 Lactuca sativa HOM05D003924 ORTHO05D005216 8.4e-70 269.6 357 52.1
HPP92_017238 Vanilla planifolia HOM05D003924 ORTHO05D005216 2.2e-62 245.0 361 49.6
HanXRQChr09g0265821 Helianthus annuus HOM05D003924 ORTHO05D005216 5.1e-59 233.8 124 91.1
Oeu055052.1 Olea europaea HOM05D003924 ORTHO05D005216 9.6e-58 229.6 124 88.7
VMungo1309G0373 Vigna mungo HOM05D003924 ORTHO05D005216 3.4e-55 221.1 148 79.1
SEGI_20568 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 4.2e-53 214.2 145 77.2
MCO07G242 Micromonas commoda HOM05D003924 ORTHO05D005216 3.0e-51 208.0 468 37.6
Lsat_1_v5_gn_6_42681 Lactuca sativa HOM05D003924 ORTHO05D005216 7.4e-50 203.4 332 49.4
SHI16912 Sapria himalayana HOM05D003924 ORTHO05D005216 7.1e-45 186.8 354 44.1
BcaC02g07418 Brassica carinata HOM05D003924 ORTHO05D005216 7.9e-44 183.3 157 61.1
Cpa.g.sc1.272 Carica papaya HOM05D003924 ORTHO05D005216 1.3e-41 176.0 241 49.0
PRCOL_00005861 Prasinoderma coloniale HOM05D003924 ORTHO05D005216 8.5e-38 163.3 434 29.5
BcaC02g07419 Brassica carinata HOM05D003924 ORTHO05D005216 1.9e-37 162.2 170 54.7
Aqoxy298s002 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 1.8e-35 155.6 184 56.5
Os02g0631601 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 2.3e-35 155.2 110 74.5
Cfa006566 Carpinus fangiana HOM05D003924 ORTHO05D043563 8.2e-33 146.7 83 84.3
AL4G36890 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 2.6e-31 141.7 77 88.3
Os04g0523350 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 2.9e-30 138.3 110 68.2
Psat7g256680 Pisum sativum HOM05D003924 ORTHO05D005216 5.5e-29 134.0 237 43.5
Atru.chr12.624 Acer truncatum HOM05D003924 ORTHO05D005216 7.2e-29 133.7 102 75.5
SEGI_09139 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 5.7e-26 124.0 84 75.0
SEGI_15949 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 5.7e-26 124.0 84 75.0
Aqoxy298s004 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 1.1e-24 119.8 72 79.2
Os04g0523200 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 4.1e-24 117.9 104 66.3
Lsat_1_v5_gn_2_74800 Lactuca sativa HOM05D000572 ORTHO05D028562 1.4e-21 109.4 65 86.2
MBI04_g36907_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 7.2e-21 107.1 96 65.6
Rhsim03G0121600 Rhododendron simsii HOM05D003924 ORTHO05D005216 8.0e-20 103.6 66 74.2
BcaC02g07417 Brassica carinata HOM05D003924 ORTHO05D005216 1.5e-13 82.8 56 69.6
AUR62023872 Chenopodium quinoa HOM05D003924 ORTHO05D000112 4.7e-12 77.8 76 59.2
Lsat_1_v5_gn_8_86941 Lactuca sativa HOM05D002786 ORTHO05D003493 7.0e-08 63.9 94 44.7


User provided reference genes

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