Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0000014g0500 Nicotiana tabacum HOM05D000964 ORTHO05D004047 6.2e-67 257.3 128 100.0
Oeu058362.1 Olea europaea HOM05D000964 ORTHO05D004047 2.3e-29 132.5 68 89.7
PGSC0003DMG400002472 Solanum tuberosum HOM05D000964 ORTHO05D004047 6.7e-29 131.0 68 89.7
PGSC0003DMG400014075 Solanum tuberosum HOM05D000964 ORTHO05D004047 6.7e-29 131.0 68 89.7
CAN.G1595.4 Capsicum annuum HOM05D000964 ORTHO05D004047 2.6e-28 129.0 68 88.2
Peaxi162Scf00705g00612 Petunia axillaris HOM05D000964 ORTHO05D004047 2.6e-28 129.0 68 88.2
CAN.G327.18 Capsicum annuum HOM05D000964 ORTHO05D004047 5.7e-28 127.9 68 88.2
Nn5g30296 Nelumbo nucifera HOM05D000964 ORTHO05D004047 2.2e-27 125.9 70 85.7
EL10Ac4g07915 Beta vulgaris HOM05D000890 ORTHO05D000697 2.8e-27 125.6 68 83.8
CAN.G1478.7 Capsicum annuum HOM05D000964 ORTHO05D004047 3.7e-27 125.2 68 86.8
Migut.D01434 Erythranthe guttata HOM05D000964 ORTHO05D004047 1.4e-26 123.2 68 82.4
Nn002s41359 Nelumbo nucifera HOM05D000964 ORTHO05D004047 3.1e-26 122.1 70 82.9
Nn049s41916 Nelumbo nucifera HOM05D000964 ORTHO05D004047 3.1e-26 122.1 70 82.9
Nn070s42369 Nelumbo nucifera HOM05D000964 ORTHO05D004047 3.1e-26 122.1 70 82.9
PGR111G0002 Punica granatum HOM05D000964 ORTHO05D004047 3.1e-26 122.1 70 81.4
Lj2C1239T2 Lonicera japonica HOM05D000964 ORTHO05D004047 5.3e-26 121.3 68 82.4
Lj2P1237T122 Lonicera japonica HOM05D000964 ORTHO05D004047 5.3e-26 121.3 68 82.4
Lju5009P0T55 Lonicera japonica HOM05D000964 ORTHO05D004047 5.3e-26 121.3 68 82.4
PGSC0003DMG400003335 Solanum tuberosum HOM05D000964 ORTHO05D004047 7.0e-26 120.9 68 83.8
Hma1.2p1_0818F.1_g223330 Hydrangea macrophylla HOM05D000964 ORTHO05D004047 1.2e-25 120.2 68 82.4
Gohir.1Z050334 Gossypium hirsutum HOM05D000964 ORTHO05D004047 3.5e-25 118.6 70 80.0
Gohir.A12G025100 Gossypium hirsutum HOM05D000964 ORTHO05D004047 3.5e-25 118.6 70 80.0
Gohir.D01G102099 Gossypium hirsutum HOM05D000964 ORTHO05D004047 3.5e-25 118.6 70 80.0
Gohir.D02G179050 Gossypium hirsutum HOM05D000964 ORTHO05D004047 3.5e-25 118.6 70 80.0
Nitab4.5_0001564g0040 Nicotiana tabacum HOM05D000964 ORTHO05D004047 4.5e-25 118.2 68 82.4
Nitab4.5_0004376g0120 Nicotiana tabacum HOM05D000964 ORTHO05D004047 4.5e-25 118.2 68 80.9
Cpa.g.c42072 Carica papaya HOM05D000964 ORTHO05D004047 5.9e-25 117.9 70 81.4
Oeu012812.1 Olea europaea HOM05D000964 ORTHO05D004047 7.7e-25 117.5 69 79.7
RcHm_v2.0_CPg0501901 Rosa chinensis HOM05D000964 ORTHO05D004047 7.7e-25 117.5 70 80.0
MSTRG.11748 Avicennia marina HOM05D000964 ORTHO05D004047 1.3e-24 116.7 68 79.4
DCAR_032517 Daucus carota HOM05D000964 ORTHO05D004047 1.3e-24 116.7 69 79.7
Gohir.D08G194628 Gossypium hirsutum HOM05D000964 ORTHO05D004047 1.3e-24 116.7 70 77.1
PSO478G2461 Papaver somniferum HOM05D000964 ORTHO05D004047 1.7e-24 116.3 70 78.6
PSO548G0113 Papaver somniferum HOM05D000964 ORTHO05D004047 1.7e-24 116.3 70 78.6
BNapus_Darmor_BZH_scaffold_253p00330 Brassica napus HOM05D000964 ORTHO05D004047 3.8e-24 115.2 70 75.7
BraA06t25382Z Brassica rapa HOM05D000964 ORTHO05D004047 3.8e-24 115.2 70 75.7
BraSC143t45635Z Brassica rapa HOM05D000964 ORTHO05D004047 3.8e-24 115.2 70 75.7
Oeu012810.1 Olea europaea HOM05D000964 ORTHO05D004047 3.8e-24 115.2 68 79.4
EL10Ac5g11667 Beta vulgaris HOM05D000964 ORTHO05D004047 5.0e-24 114.8 68 77.9
Gohir.A05G326924 Gossypium hirsutum HOM05D000964 ORTHO05D004047 5.0e-24 114.8 70 78.6
Oeu064090.1 Olea europaea HOM05D000964 ORTHO05D004047 5.0e-24 114.8 68 76.5
Sed0000903 Sechium edule HOM05D000964 ORTHO05D004047 5.0e-24 114.8 70 74.3
BolSC29t60485H Brassica oleracea HOM05D000964 ORTHO05D004047 8.5e-24 114.0 70 74.3
BolSC29t60607H Brassica oleracea HOM05D000964 ORTHO05D004047 8.5e-24 114.0 70 74.3
BolSC46t61018H Brassica oleracea HOM05D000964 ORTHO05D004047 8.5e-24 114.0 70 74.3
BolSC49t61165H Brassica oleracea HOM05D000964 ORTHO05D004047 8.5e-24 114.0 70 74.3
Gorai.004G205100 Gossypium raimondii HOM05D000964 ORTHO05D004047 1.5e-23 113.2 68 76.5
HanXRQChr00c0392g0574491 Helianthus annuus HOM05D000964 ORTHO05D004047 1.5e-23 113.2 68 77.9
HanXRQChr00c0394g0574561 Helianthus annuus HOM05D000964 ORTHO05D004047 1.5e-23 113.2 68 77.9
HanXRQChr00c0593g0576341 Helianthus annuus HOM05D000964 ORTHO05D004047 1.5e-23 113.2 68 77.9
HanXRQChr01g0020241 Helianthus annuus HOM05D000964 ORTHO05D004047 1.5e-23 113.2 68 77.9
HanXRQChr04g0127511 Helianthus annuus HOM05D000964 ORTHO05D004047 1.5e-23 113.2 68 77.9
HanXRQChr10g0284361 Helianthus annuus HOM05D000964 ORTHO05D004047 1.5e-23 113.2 68 77.9
HanXRQChr10g0318081 Helianthus annuus HOM05D000964 ORTHO05D004047 1.5e-23 113.2 68 77.9
HanXRQChr11g0321081 Helianthus annuus HOM05D000964 ORTHO05D004047 1.5e-23 113.2 68 77.9
HanXRQChr11g0326941 Helianthus annuus HOM05D000964 ORTHO05D004047 1.5e-23 113.2 68 77.9
HanXRQChr12g0369841 Helianthus annuus HOM05D000964 ORTHO05D004047 1.5e-23 113.2 68 77.9
HanXRQCPg0580161 Helianthus annuus HOM05D000964 ORTHO05D004047 1.5e-23 113.2 68 77.9
ATCG00740 Arabidopsis thaliana HOM05D000964 ORTHO05D004047 1.9e-23 112.8 68 75.0
ClCG11G017180 Citrullus lanatus HOM05D000964 ORTHO05D004047 1.9e-23 112.8 70 74.3
Gohir.A09G245632 Gossypium hirsutum HOM05D000964 ORTHO05D004047 1.9e-23 112.8 70 77.1
Lsat_1_v5_gn_0_41600 Lactuca sativa HOM05D000964 ORTHO05D004047 3.2e-23 112.1 68 76.5
Lsat_1_v5_gn_6_69061 Lactuca sativa HOM05D000964 ORTHO05D004047 3.2e-23 112.1 68 76.5
Lsat_1_v5_gn_7_96560 Lactuca sativa HOM05D000964 ORTHO05D004047 3.2e-23 112.1 68 76.5
Hund29571 Selenicereus undatus HOM05D000964 ORTHO05D004047 3.2e-23 112.1 68 75.0
Hund30094 Selenicereus undatus HOM05D000964 ORTHO05D004047 3.2e-23 112.1 68 75.0
Gorai.010G120000 Gossypium raimondii HOM05D000964 ORTHO05D004047 4.2e-23 111.7 68 76.5
Hma1.2p1_0818F.1_g223310 Hydrangea macrophylla HOM05D000631 ORTHO05D004047 4.2e-23 111.7 64 81.2
HanXRQChr11g0345261 Helianthus annuus HOM05D000964 ORTHO05D004047 5.5e-23 111.3 68 76.5
arahy.Tifrunner.gnm1.ann1.918II3 Arachis hypogaea HOM05D000964 ORTHO05D004047 7.2e-23 110.9 70 77.1
CARHR282230 Cardamine hirsuta HOM05D000964 ORTHO05D004047 7.2e-23 110.9 70 72.9
MELO3C000951.2 Cucumis melo HOM05D000964 ORTHO05D004047 7.2e-23 110.9 70 74.3
MELO3C027953.2 Cucumis melo HOM05D000964 ORTHO05D004047 7.2e-23 110.9 70 74.3
AL2G20580 Arabidopsis lyrata HOM05D000964 ORTHO05D004047 1.2e-22 110.2 70 72.9
AL2G21700 Arabidopsis lyrata HOM05D000964 ORTHO05D004047 1.2e-22 110.2 70 72.9
Lsat_1_v5_gn_5_50401 Lactuca sativa HOM05D000964 ORTHO05D004047 1.2e-22 110.2 68 73.5
Gorai.013G106800 Gossypium raimondii HOM05D000964 ORTHO05D004047 3.6e-22 108.6 70 75.7
Peaxi162Scf00527g00039 Petunia axillaris HOM05D000964 ORTHO05D004047 6.1e-22 107.8 57 87.7
HanXRQChr05g0152581 Helianthus annuus HOM05D000964 ORTHO05D004047 1.4e-21 106.7 62 80.6
arahy.Tifrunner.gnm1.ann1.YUC9G4 Arachis hypogaea HOM05D000964 ORTHO05D004047 2.3e-21 105.9 70 74.3
HanXRQChr10g0303891 Helianthus annuus HOM05D000964 ORTHO05D004047 2.3e-21 105.9 68 73.5
Medtr4g051380 Medicago truncatula HOM05D000964 ORTHO05D004047 2.3e-21 105.9 70 74.3
Lalb_Chr25g0283351 Lupinus albus HOM05D000964 ORTHO05D004047 5.2e-21 104.8 70 75.7
Duzib165G0005 Durio zibethinus HOM05D000964 ORTHO05D004047 6.7e-21 104.4 91 58.2
LjContig00318g0022290 Lotus japonicus HOM05D000964 ORTHO05D004047 6.7e-21 104.4 67 73.1
LjContig00319g0012184 Lotus japonicus HOM05D000964 ORTHO05D004047 6.7e-21 104.4 67 73.1
LjContig00319g0026138 Lotus japonicus HOM05D000964 ORTHO05D004047 6.7e-21 104.4 67 73.1
TWI75G0222 Tripterygium wilfordii HOM05D000964 ORTHO05D004047 1.5e-20 103.2 70 72.9
Lalb_Chr03g0039311 Lupinus albus HOM05D000964 ORTHO05D004047 2.6e-20 102.4 70 74.3
C02p60150 Brassica napus HOM05D000964 ORTHO05D004047 5.7e-20 101.3 61 73.8
Lsat_1_v5_gn_2_92080 Lactuca sativa HOM05D000964 ORTHO05D004047 7.4e-20 100.9 64 75.0
Psat5g068400 Pisum sativum HOM05D000964 ORTHO05D004047 7.4e-20 100.9 70 68.6
Hund08596 Selenicereus undatus HOM05D000964 ORTHO05D004047 9.7e-20 100.5 61 73.8
MELO3C033568.2 Cucumis melo HOM05D000964 ORTHO05D004047 1.7e-19 99.8 68 67.6
HanXRQChr15g0486541 Helianthus annuus HOM05D000964 ORTHO05D004047 1.7e-19 99.8 61 75.4
Hund07962 Selenicereus undatus HOM05D000964 ORTHO05D004047 1.4e-18 96.7 68 66.2
EL10As12g24034 Beta vulgaris HOM05D000964 ORTHO05D004047 1.8e-18 96.3 54 81.5
Nitab4.5_0020737g0020 Nicotiana tabacum HOM05D000964 ORTHO05D004047 7.0e-18 94.4 51 84.3
Psat4g041120 Pisum sativum HOM05D000964 ORTHO05D004047 7.0e-18 94.4 68 64.7
Medtr0002s0760 Medicago truncatula HOM05D000964 ORTHO05D004047 3.5e-17 92.0 70 65.7
HPP92_028393 Vanilla planifolia HOM05D000964 ORTHO05D004047 3.5e-17 92.0 92 54.3
HPP92_028402 Vanilla planifolia HOM05D000964 ORTHO05D004047 3.5e-17 92.0 92 54.3
HPP92_028410 Vanilla planifolia HOM05D000964 ORTHO05D004047 3.5e-17 92.0 92 54.3
Sed0010415 Sechium edule HOM05D000964 ORTHO05D003870 4.5e-17 91.7 59 69.5
Sed0021757 Sechium edule HOM05D000964 ORTHO05D003870 4.5e-17 91.7 59 69.5
Sed0026352 Sechium edule HOM05D000964 ORTHO05D004047 4.5e-17 91.7 59 69.5
Hund08803 Selenicereus undatus HOM05D000964 ORTHO05D004047 7.7e-17 90.9 59 69.5
Hund29611 Selenicereus undatus HOM05D000964 ORTHO05D004047 7.7e-17 90.9 59 69.5
Hund30271 Selenicereus undatus HOM05D000964 ORTHO05D004047 1.0e-16 90.5 54 75.9
Hund31408 Selenicereus undatus HOM05D000964 ORTHO05D004047 1.0e-16 90.5 54 75.9
Solyc00g500157.1 Solanum lycopersicum HOM05D000964 ORTHO05D004047 2.2e-16 89.4 68 66.2
Solyc09g050062.1 Solanum lycopersicum HOM05D000964 ORTHO05D004047 2.2e-16 89.4 68 66.2
Gorai.005G117200 Gossypium raimondii HOM05D000964 ORTHO05D004047 5.0e-16 88.2 54 79.6
CSS0021839 Camellia sinensis var. sinensis HOM05D000964 ORTHO05D004047 6.5e-16 87.8 52 80.8
BraSC58t46439Z Brassica rapa HOM05D000964 ORTHO05D004047 2.5e-15 85.9 57 68.4
CsaV3_3G019080 Cucumis sativus L. HOM05D000964 ORTHO05D004047 1.6e-14 83.2 56 67.9
Gohir.D02G103150 Gossypium hirsutum HOM05D000964 ORTHO05D004047 4.7e-14 81.6 64 65.6
arahy.Tifrunner.gnm1.ann1.93R6SD Arachis hypogaea HOM05D000964 ORTHO05D004047 8.0e-14 80.9 70 61.4
Psat7g045240 Pisum sativum HOM05D000964 ORTHO05D004047 1.4e-13 80.1 60 65.0
Gohir.A01G137773 Gossypium hirsutum HOM05D000964 ORTHO05D004047 2.6e-12 75.9 43 81.4
SEGI_04931 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 4.4e-12 75.1 71 50.7
SEGI_17120 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 4.4e-12 75.1 71 50.7
SEGI_21589 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 4.4e-12 75.1 71 50.7
SEGI_31867 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 4.4e-12 75.1 71 50.7
SEGI_32358 Sequoiadendron giganteum HOM05D000216 ORTHO05D001131 4.4e-12 75.1 71 50.7
SEGI_33647 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 4.4e-12 75.1 71 50.7
SEGI_36889 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 4.4e-12 75.1 71 50.7
Solyc12g035890.3 Solanum lycopersicum HOM05D000964 ORTHO05D004047 4.4e-12 75.1 50 72.0
Gohir.A08G063300 Gossypium hirsutum HOM05D000964 ORTHO05D004047 2.8e-11 72.4 43 76.7
Gohir.D03G062001 Gossypium hirsutum HOM05D000964 ORTHO05D004047 8.3e-11 70.9 70 57.1
Gorai.007G252200 Gossypium raimondii HOM05D000964 ORTHO05D004047 8.3e-11 70.9 43 76.7
SEGI_02369 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 2.4e-10 69.3 68 48.5
SEGI_22757 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 2.4e-10 69.3 71 47.9
EL10As15g24109 Beta vulgaris HOM05D000964 ORTHO05D004047 3.5e-09 65.5 40 72.5
Peaxi162Scf00456g00026 Petunia axillaris HOM05D008598 ORTHO05D012806 1.3e-08 63.5 52 69.2
Atru.chr12.312 Acer truncatum HOM05D000964 ORTHO05D004047 6.5e-08 61.2 37 78.4
RhsimUnG0146300 Rhododendron simsii HOM05D000132 ORTHO05D000058 8.5e-08 60.8 51 68.6
arahy.Tifrunner.gnm1.ann1.P04IPH Arachis hypogaea HOM05D000580 ORTHO05D001362 1.1e-07 60.5 32 84.4
BraSC58t46500Z Brassica rapa HOM05D000964 ORTHO05D004047 1.9e-07 59.7 36 75.0
Medtr4g059920 Medicago truncatula HOM05D000964 ORTHO05D004047 1.9e-07 59.7 58 56.9
Solyc01g017440.1 Solanum lycopersicum HOM05D000964 ORTHO05D004047 4.2e-07 58.5 52 50.0
TPR.G38392 Trifolium pratense HOM05D000964 ORTHO05D004047 9.4e-07 57.4 49 59.2
Pp3c5_15590 Physcomitrium patens HOM05D000964 ORTHO05D004047 1.2e-06 57.0 62 45.2
SMO086G0025 Selaginella moellendorffii HOM05D000964 ORTHO05D004047 2.1e-06 56.2 62 43.5
Nitab4.5_0003481g0050 Nicotiana tabacum HOM05D016132 ORTHO05D015416 8.0e-06 54.3 31 90.3


User provided reference genes

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