Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N02046 Erythranthe guttata HOM05D004820 ORTHO05D005946 3.3e-226 788.1 419 100.0
SGA_v2.0_scaffold81G26015 Striga asiatica HOM05D004820 ORTHO05D005946 2.0e-186 656.0 420 84.3
CAN.G590.6 Capsicum annuum HOM05D004820 ORTHO05D005946 1.5e-170 603.2 415 78.3
Solyc09g065280.4 Solanum lycopersicum HOM05D004820 ORTHO05D005946 1.7e-169 599.7 414 77.5
Cc03_g10020 Coffea canephora HOM05D004820 ORTHO05D005946 1.5e-162 576.6 419 75.4
TAR362G1079 Trochodendron aralioides HOM05D004820 ORTHO05D005946 1.3e-161 573.5 423 74.9
Sopen09g027030 Solanum pennellii HOM05D004820 ORTHO05D005946 1.7e-161 573.2 414 75.4
PGSC0003DMG400019362 Solanum tuberosum HOM05D004820 ORTHO05D005946 4.9e-161 571.6 414 74.9
MSTRG.17449 Avicennia marina HOM05D004820 ORTHO05D005946 7.0e-160 567.8 418 75.8
Nn4g26288 Nelumbo nucifera HOM05D004820 ORTHO05D005946 1.2e-159 567.0 424 74.1
Oeu041704.1 Olea europaea HOM05D004820 ORTHO05D005946 2.0e-159 566.2 421 74.6
Atru.chr5.1456 Acer truncatum HOM05D004820 ORTHO05D005946 1.6e-156 556.6 432 71.5
Gohir.D08G075000 Gossypium hirsutum HOM05D004820 ORTHO05D005946 6.2e-156 554.7 422 72.3
Sc05g0005630 Simmondsia chinensis HOM05D004820 ORTHO05D005946 8.1e-156 554.3 418 72.0
CSS0006431 Camellia sinensis var. sinensis HOM05D004820 ORTHO05D005946 2.0e-154 549.7 399 75.7
Glyma.03G155000 Glycine max HOM05D004820 ORTHO05D005946 3.4e-154 548.9 426 71.8
Duzib138G0452 Durio zibethinus HOM05D004820 ORTHO05D005946 9.8e-154 547.4 419 72.6
Thecc.01G277300 Theobroma cacao HOM05D004820 ORTHO05D005946 4.9e-153 545.0 421 72.4
TPR.G9917 Trifolium pratense HOM05D004820 ORTHO05D005946 1.4e-152 543.5 420 72.4
Glyma.19G157200 Glycine max HOM05D004820 ORTHO05D005946 2.4e-152 542.7 418 71.3
Ciclev10020348m.g Citrus clementina HOM05D004820 ORTHO05D005946 4.1e-152 542.0 420 72.1
Gorai.004G216400 Gossypium raimondii HOM05D004820 ORTHO05D005946 5.4e-152 541.6 421 72.4
VMungo1383G2933 Vigna mungo HOM05D004820 ORTHO05D005946 5.4e-152 541.6 419 71.6
Cpa.g.sc52.45 Carica papaya HOM05D004820 ORTHO05D005946 1.6e-151 540.0 421 72.4
Gohir.A08G186300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 4.6e-151 538.5 421 72.2
Gohir.D08G204400 Gossypium hirsutum HOM05D004820 ORTHO05D005946 6.0e-151 538.1 421 72.2
Manes.01G206900 Manihot esculenta HOM05D004820 ORTHO05D005946 1.0e-150 537.3 420 71.0
TWI14G0518 Tripterygium wilfordii HOM05D004820 ORTHO05D005946 2.3e-150 536.2 419 70.6
Gohir.A08G066300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 3.9e-150 535.4 422 71.3
Actinidia00769 Actinidia chinensis HOM05D004820 ORTHO05D005946 8.6e-150 534.3 424 70.8
Eucgr.K03365 Eucalyptus grandis HOM05D004820 ORTHO05D005946 1.1e-149 533.9 415 71.6
Lsat_1_v5_gn_5_187781 Lactuca sativa HOM05D004820 ORTHO05D005946 1.9e-149 533.1 399 75.4
CiPaw.08G106000 Carya illinoinensis HOM05D004820 ORTHO05D005946 2.5e-149 532.7 419 71.4
CANSAT25G3765 Cannabis sativa HOM05D004820 ORTHO05D005946 3.3e-149 532.3 424 71.2
Gorai.004G079300 Gossypium raimondii HOM05D004820 ORTHO05D005946 3.3e-149 532.3 424 70.0
MD11G1284100 Malus domestica HOM05D004820 ORTHO05D005946 3.3e-149 532.3 416 70.7
QL12p021397 Quercus lobata HOM05D004820 ORTHO05D005946 5.6e-149 531.6 420 71.2
Potri.005G210600 Populus trichocarpa HOM05D004820 ORTHO05D005946 2.1e-148 529.6 421 70.8
Medtr7g095000 Medicago truncatula HOM05D004820 ORTHO05D005946 2.8e-148 529.3 420 71.2
MELO3C015826.2 Cucumis melo HOM05D004820 ORTHO05D005946 6.2e-148 528.1 427 70.0
Phvul.005G035400 Phaseolus vulgaris HOM05D004820 ORTHO05D005946 2.3e-147 526.2 419 70.6
Duzib211G0468 Durio zibethinus HOM05D004820 ORTHO05D005946 5.2e-147 525.0 419 70.4
Lj4g0024215 Lotus japonicus HOM05D004820 ORTHO05D005946 8.9e-147 524.2 420 71.0
Lalb_Chr06g0162971 Lupinus albus HOM05D004820 ORTHO05D005946 1.2e-146 523.9 421 70.8
CsaV3_7G028060 Cucumis sativus L. HOM05D004820 ORTHO05D005946 3.4e-146 522.3 422 69.7
arahy.Tifrunner.gnm1.ann1.HALK3W Arachis hypogaea HOM05D004820 ORTHO05D005946 5.8e-146 521.5 429 69.7
arahy.Tifrunner.gnm1.ann1.NQ54M2 Arachis hypogaea HOM05D004820 ORTHO05D005946 7.6e-146 521.2 429 69.9
arahy.Tifrunner.gnm1.ann1.JHLY8X Arachis hypogaea HOM05D004820 ORTHO05D005946 1.3e-145 520.4 429 69.5
THA.LOC104801242 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 2.2e-145 519.6 421 68.9
Ca_08606_v3 Cicer arietinum L. HOM05D004820 ORTHO05D005946 2.9e-145 519.2 420 70.0
MD03G1263300 Malus domestica HOM05D004820 ORTHO05D005946 2.9e-145 519.2 416 69.5
PGR044G0684 Punica granatum HOM05D004820 ORTHO05D005946 3.8e-145 518.8 417 70.7
Sabra05G0160800 Salix brachista HOM05D004820 ORTHO05D005946 2.4e-144 516.2 427 68.9
PSO761G0350 Papaver somniferum HOM05D004820 ORTHO05D005946 9.2e-144 514.2 419 69.9
Psat3g064000 Pisum sativum HOM05D004820 ORTHO05D005946 6.0e-143 511.5 420 69.5
THA.LOC104815940 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 1.0e-142 510.8 423 68.8
Aa31LG1G9390 Aethionema arabicum HOM05D004820 ORTHO05D005946 8.6e-142 507.7 440 65.9
AL1G12610 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 1.9e-141 506.5 423 68.8
arahy.Tifrunner.gnm1.ann1.X2D3U2 Arachis hypogaea HOM05D004820 ORTHO05D005946 4.3e-141 505.4 429 68.1
Sed0001544 Sechium edule HOM05D004820 ORTHO05D005946 9.6e-141 504.2 423 68.3
PSO210G1690 Papaver somniferum HOM05D004820 ORTHO05D005946 4.7e-140 501.9 418 68.2
HanXRQChr01g0003021 Helianthus annuus HOM05D004820 ORTHO05D005946 1.8e-139 500.0 396 70.7
AUR62027118 Chenopodium quinoa HOM05D004820 ORTHO05D005946 3.1e-139 499.2 423 65.7
HPP92_018354 Vanilla planifolia HOM05D004820 ORTHO05D005946 1.2e-138 497.3 423 66.0
A09p68340 Brassica napus HOM05D004820 ORTHO05D005946 1.5e-138 496.9 421 67.0
EL10Ac8g18597 Beta vulgaris HOM05D004820 ORTHO05D005946 9.9e-138 494.2 422 65.6
ECA248G2754 Erigeron canadensis HOM05D004820 ORTHO05D005946 3.5e-135 485.7 423 67.6
BcaC07g42265 Brassica carinata HOM05D004820 ORTHO05D005946 4.6e-135 485.3 419 66.1
AUR62012894 Chenopodium quinoa HOM05D004820 ORTHO05D005946 7.8e-135 484.6 419 65.2
Carub.0001s0228 Capsella rubella HOM05D004820 ORTHO05D005946 5.1e-134 481.9 335 76.7
CARHR002470 Cardamine hirsuta HOM05D004820 ORTHO05D005946 8.7e-134 481.1 335 76.1
Prupe.8G239700 Prunus persica HOM05D004820 ORTHO05D005946 1.9e-133 479.9 417 65.7
C08p52910 Brassica napus HOM05D004820 ORTHO05D005946 1.1e-131 474.2 421 64.8
Thhalv10009621m.g Eutrema salsugineum HOM05D004820 ORTHO05D005946 1.8e-131 473.4 326 77.3
AT1G03140 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 1.2e-130 470.7 323 77.4
BolC8t52807H Brassica oleracea HOM05D004820 ORTHO05D005946 1.3e-129 467.2 421 63.9
QL03p020183 Quercus lobata HOM05D004820 ORTHO05D005946 6.4e-129 464.9 388 66.2
Ah.01g024010 Amaranthus hybridus HOM05D004820 ORTHO05D005946 2.4e-128 463.0 418 62.2
SEGI_11361 Sequoiadendron giganteum HOM05D004820 ORTHO05D005946 5.4e-128 461.8 418 62.7
Zm00001eb426860 Zea mays HOM05D004820 ORTHO05D005946 2.1e-127 459.9 416 62.3
FvH4_2g23380 Fragaria vesca HOM05D004820 ORTHO05D005946 2.7e-127 459.5 419 63.5
Zm00001eb324990 Zea mays HOM05D004820 ORTHO05D005946 4.6e-127 458.8 442 60.9
Mapoly0140s0012 Marchantia polymorpha HOM05D004820 ORTHO05D005946 6.0e-127 458.4 424 60.4
FAN20G0972 Fragaria x ananassa HOM05D004820 ORTHO05D005946 8.7e-126 454.5 419 63.2
Zm00001eb426810 Zea mays HOM05D004820 ORTHO05D005946 3.3e-125 452.6 417 61.2
Zm00001eb426820 Zea mays HOM05D004820 ORTHO05D005946 9.6e-125 451.1 417 61.6
FAN15G1635 Fragaria x ananassa HOM05D004820 ORTHO05D005946 2.1e-124 449.9 419 63.0
FAN24G1940 Fragaria x ananassa HOM05D004820 ORTHO05D005946 6.2e-124 448.4 437 60.9
Zm00001eb426800 Zea mays HOM05D004820 ORTHO05D005946 6.2e-124 448.4 416 60.8
Sp1g02160 Schrenkiella parvula HOM05D004820 ORTHO05D005946 3.1e-123 446.0 427 62.5
RcHm_v2.0_Chr6g0290841 Rosa chinensis HOM05D004820 ORTHO05D005946 6.9e-123 444.9 424 61.6
FAN27G0992 Fragaria x ananassa HOM05D004820 ORTHO05D005946 9.0e-123 444.5 428 61.7
BolC8t46841H Brassica oleracea HOM05D004820 ORTHO05D005946 2.0e-122 443.4 422 62.6
Os07g0571900 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 7.6e-122 441.4 442 59.7
C08p00420 Brassica napus HOM05D004820 ORTHO05D005946 2.2e-121 439.9 422 62.3
Zm00001eb426850 Zea mays HOM05D004820 ORTHO05D005946 6.4e-121 438.3 396 61.6
A08p37470 Brassica napus HOM05D004820 ORTHO05D005946 8.4e-121 438.0 427 61.8
BraA08t35645Z Brassica rapa HOM05D004820 ORTHO05D005946 8.4e-121 438.0 427 61.8
Pp3c21_19780 Physcomitrium patens HOM05D004820 ORTHO05D005946 1.4e-120 437.2 423 58.6
AL1G45340 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 2.4e-120 436.4 418 61.7
Lj4g0011679 Lotus japonicus HOM05D004820 ORTHO05D005946 6.2e-116 421.8 402 61.7
PGSC0003DMG400010602 Solanum tuberosum HOM05D004820 ORTHO05D005946 1.9e-112 410.2 414 58.9
SMO356G0463 Selaginella moellendorffii HOM05D004820 ORTHO05D005946 6.7e-110 401.7 404 58.2
SpUn0083_0020 Schrenkiella parvula HOM05D004820 ORTHO05D005946 7.4e-109 398.3 377 59.4
Sp5g11480 Schrenkiella parvula HOM05D004820 ORTHO05D005946 2.4e-107 393.3 377 58.4
Lalb_Chr02g0142711 Lupinus albus HOM05D004820 ORTHO05D005946 5.7e-101 372.1 224 84.4
PGSC0003DMG400010600 Solanum tuberosum HOM05D004820 ORTHO05D005946 8.2e-100 368.2 417 54.9
Zm00001eb216840 Zea mays HOM05D004820 ORTHO05D005946 2.6e-98 363.2 419 53.5
COL.COLO4_09079 Corchorus olitorius HOM05D004820 ORTHO05D005946 2.5e-96 356.7 448 50.7
Rhsim01G0274100 Rhododendron simsii HOM05D004820 ORTHO05D005946 4.2e-96 355.9 430 54.7
Oeu028072.3 Olea europaea HOM05D004820 ORTHO05D005946 1.5e-93 347.4 281 70.5
CBR_g23335 Chara braunii HOM05D004820 ORTHO05D005946 1.1e-88 331.3 443 46.0
AT1G54590 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 3.6e-87 326.2 290 63.1
CAN.G198.19 Capsicum annuum HOM05D004820 ORTHO05D005946 1.4e-83 314.3 352 55.4
Sopen07g025700 Solanum pennellii HOM05D004820 ORTHO05D005946 3.2e-80 303.1 340 55.6
Solyc07g052190.1 Solanum lycopersicum HOM05D004820 ORTHO05D005946 1.6e-79 300.8 373 50.9
SHI31236 Sapria himalayana HOM05D004820 ORTHO05D005946 2.2e-73 280.4 288 59.4
Zm00001eb426870 Zea mays HOM05D004820 ORTHO05D005946 1.9e-72 277.3 169 81.1
GSVIVG01001158001 Vitis vinifera HOM05D004820 ORTHO05D005946 6.1e-71 272.3 161 85.7
Sopen07g025830 Solanum pennellii HOM05D004820 ORTHO05D005946 2.0e-66 257.3 339 48.7
Cpa.g.sc52.46 Carica papaya HOM05D004820 ORTHO05D005946 3.8e-57 226.5 137 83.9
Solyc07g052050.2 Solanum lycopersicum HOM05D004820 ORTHO05D005946 8.6e-57 225.3 158 69.6
SHI31234 Sapria himalayana HOM05D004820 ORTHO05D005946 1.4e-54 218.0 122 86.1
HanXRQChr15g0487721 Helianthus annuus HOM05D004820 ORTHO05D005946 1.1e-51 208.4 168 64.9
Zm00001eb426830 Zea mays HOM05D004820 ORTHO05D005946 1.5e-45 188.0 117 81.2
Sopen07g025610 Solanum pennellii HOM05D004820 ORTHO05D005946 7.5e-45 185.7 263 50.2
Lj1g0027313 Lotus japonicus HOM05D004820 ORTHO05D005946 2.4e-43 180.6 159 59.1
Sopen07g025690 Solanum pennellii HOM05D004820 ORTHO05D005946 1.6e-42 177.9 125 74.4
Os03g0701100 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 1.9e-40 171.0 283 41.3
MCO06G052 Micromonas commoda HOM05D004820 ORTHO05D005946 9.5e-40 168.7 156 53.8
Nitab4.5_0003852g0050 Nicotiana tabacum HOM05D004820 ORTHO05D005946 5.8e-37 159.5 176 56.8
Cre13.g567750 Chlamydomonas reinhardtii HOM05D004820 ORTHO05D005946 2.1e-31 141.0 416 32.2
Nitab4.5_0003327g0040 Nicotiana tabacum HOM05D004820 ORTHO05D005946 8.1e-31 139.0 159 57.2
Gohir.D05G222300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.1e-27 128.6 64 92.2
CARHR182160 Cardamine hirsuta HOM05D004820 ORTHO05D005946 1.4e-27 128.3 114 58.8
vmacro14915 Vaccinium macrocarpon HOM05D004820 ORTHO05D005946 1.4e-27 128.3 147 59.2
Gohir.D11G242500 Gossypium hirsutum HOM05D004820 ORTHO05D005946 3.2e-27 127.1 64 90.6
Gorai.009G229700 Gossypium raimondii HOM05D004820 ORTHO05D005946 3.2e-27 127.1 64 90.6
Gorai.011G187700 Gossypium raimondii HOM05D004820 ORTHO05D005946 1.6e-26 124.8 64 89.1
Zm00001eb078380 Zea mays HOM05D004820 ORTHO05D005946 3.9e-25 120.2 72 81.9
Zm00001eb180190 Zea mays HOM05D004820 ORTHO05D005946 5.6e-24 116.3 68 83.8
BraA09t42170Z Brassica rapa HOM05D004820 ORTHO05D005946 1.6e-23 114.8 156 48.1
Zm00001eb017440 Zea mays HOM05D004820 ORTHO05D005946 1.4e-22 111.7 66 81.8
Zm00001eb368520 Zea mays HOM05D004820 ORTHO05D005946 1.4e-22 111.7 68 80.9
TAR365G1077 Trochodendron aralioides HOM05D004820 ORTHO05D005946 1.8e-22 111.3 101 59.4
Nn4g23784 Nelumbo nucifera HOM05D004820 ORTHO05D005946 2.8e-15 87.4 108 47.2
Dinv32923 Davidia involucrata HOM05D004820 ORTHO05D005946 2.0e-13 81.3 93 59.1
C06p09790 Brassica napus HOM05D004820 ORTHO05D001418 6.0e-10 69.7 74 51.4
BolC6t36051H Brassica oleracea HOM05D004820 ORTHO05D001418 6.0e-10 69.7 74 51.4


User provided reference genes

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