Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.N01147 Erythranthe guttata HOM05D001366 ORTHO05D005449 2.5e-53 211.8 107 100.0
SalBow3G1925 Salvia bowleyana HOM05D001366 ORTHO05D005449 1.6e-52 209.1 107 98.1
SalBow6G3832 Salvia bowleyana HOM05D001366 ORTHO05D005449 1.1e-51 206.5 107 95.3
SalBow6G5818 Salvia bowleyana HOM05D001366 ORTHO05D005449 1.1e-51 206.5 107 95.3
SGA_v2.0_scaffold337G49194 Striga asiatica HOM05D001366 ORTHO05D005449 1.8e-51 205.7 107 96.3
SGA_v2.0_scaffold219G42523 Striga asiatica HOM05D001366 ORTHO05D005449 2.6e-50 201.8 105 95.2
MSTRG.5323 Avicennia marina HOM05D001366 ORTHO05D005449 9.9e-50 199.9 107 91.6
MSTRG.16686 Avicennia marina HOM05D001366 ORTHO05D005449 1.3e-49 199.5 106 91.5
MSTRG.27758 Avicennia marina HOM05D001366 ORTHO05D005449 2.9e-49 198.4 107 92.5
unitig_22.g6842 Utricularia gibba HOM05D001366 ORTHO05D005449 4.1e-48 194.5 107 88.8
CSS0026904 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D005449 3.5e-47 191.4 107 88.8
Cc10_g08370 Coffea canephora HOM05D001366 ORTHO05D005449 4.6e-47 191.0 107 88.8
Hma1.2p1_0125F.1_g058680 Hydrangea macrophylla HOM05D001366 ORTHO05D005449 1.7e-46 189.1 107 86.9
Nitab4.5_0000354g0080 Nicotiana tabacum HOM05D001366 ORTHO05D005449 1.7e-46 189.1 107 87.9
Nitab4.5_0000885g0060 Nicotiana tabacum HOM05D001366 ORTHO05D005449 1.7e-46 189.1 107 87.9
Peaxi162Scf00160g00913 Petunia axillaris HOM05D001366 ORTHO05D005449 1.7e-46 189.1 107 87.9
CSS0031876 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D005449 2.3e-46 188.7 107 86.0
DCAR_006444 Daucus carota HOM05D001366 ORTHO05D005449 3.9e-46 188.0 107 86.0
PGSC0003DMG400002052 Solanum tuberosum HOM05D001366 ORTHO05D005449 3.9e-46 188.0 107 87.9
CAN.G1104.8 Capsicum annuum HOM05D001366 ORTHO05D005449 8.6e-46 186.8 107 86.9
Solyc12g088030.2 Solanum lycopersicum HOM05D001366 ORTHO05D005449 8.6e-46 186.8 107 86.9
Sopen12g030060 Solanum pennellii HOM05D001366 ORTHO05D005449 8.6e-46 186.8 107 86.9
COL.COLO4_35286 Corchorus olitorius HOM05D001366 ORTHO05D005449 1.1e-45 186.4 107 86.0
THA.LOC104815469 Tarenaya hassleriana HOM05D001366 ORTHO05D005449 1.1e-45 186.4 107 85.0
TAR625G0060 Trochodendron aralioides HOM05D001366 ORTHO05D005449 1.1e-45 186.4 107 86.9
Atru.chr11.619 Acer truncatum HOM05D001366 ORTHO05D005449 1.5e-45 186.0 107 86.0
Ciclev10002917m.g Citrus clementina HOM05D001366 ORTHO05D005449 1.5e-45 186.0 107 86.9
PGR042G3224 Punica granatum HOM05D001366 ORTHO05D005449 1.9e-45 185.7 107 85.0
BcaC06g32884 Brassica carinata HOM05D001366 ORTHO05D005449 2.5e-45 185.3 107 85.0
BolC7t45851H Brassica oleracea HOM05D001366 ORTHO05D005449 2.5e-45 185.3 107 85.0
Oeu040884.1 Olea europaea HOM05D001366 ORTHO05D005449 2.5e-45 185.3 107 85.0
Prupe.1G536300 Prunus persica HOM05D001366 ORTHO05D005449 2.5e-45 185.3 107 85.0
Aa31LG4G9540 Aethionema arabicum HOM05D001366 ORTHO05D005449 3.3e-45 184.9 107 85.0
Carub.0007s1663 Capsella rubella HOM05D001366 ORTHO05D005449 3.3e-45 184.9 107 85.0
PSO700G0345 Papaver somniferum HOM05D001366 ORTHO05D005449 3.3e-45 184.9 107 86.0
Actinidia29656 Actinidia chinensis HOM05D001366 ORTHO05D005449 4.3e-45 184.5 107 85.0
Manes.18G057000 Manihot esculenta HOM05D001366 ORTHO05D005449 4.3e-45 184.5 107 85.0
PSO013G0324 Papaver somniferum HOM05D001366 ORTHO05D005449 4.3e-45 184.5 107 86.0
GSVIVG01009213001 Vitis vinifera HOM05D001366 ORTHO05D005449 4.3e-45 184.5 107 85.0
BcaNung05637 Brassica carinata HOM05D001366 ORTHO05D005449 5.6e-45 184.1 107 84.1
A03p55290 Brassica napus HOM05D001366 ORTHO05D005449 5.6e-45 184.1 107 84.1
C07p53590 Brassica napus HOM05D001366 ORTHO05D005449 5.6e-45 184.1 107 84.1
BraA03t14588Z Brassica rapa HOM05D001366 ORTHO05D005449 5.6e-45 184.1 107 84.1
CiPaw.07G162800 Carya illinoinensis HOM05D001366 ORTHO05D005449 5.6e-45 184.1 107 85.0
Glyma.14G183100 Glycine max HOM05D001366 ORTHO05D005449 5.6e-45 184.1 107 85.0
Nn1g05642 Nelumbo nucifera HOM05D001366 ORTHO05D005449 5.6e-45 184.1 107 85.0
PSO832G3977 Papaver somniferum HOM05D001366 ORTHO05D005449 5.6e-45 184.1 107 85.0
Aqoxy6G00666 Aquilegia oxysepala HOM05D001366 ORTHO05D005449 7.3e-45 183.7 107 83.2
AL7G28780 Arabidopsis lyrata HOM05D001366 ORTHO05D005449 7.3e-45 183.7 107 84.1
AT4G24440 Arabidopsis thaliana HOM05D001366 ORTHO05D005449 7.3e-45 183.7 107 84.1
Thhalv10026637m.g Eutrema salsugineum HOM05D001366 ORTHO05D005449 7.3e-45 183.7 107 84.1
Sp7g22400 Schrenkiella parvula HOM05D001366 ORTHO05D005449 7.3e-45 183.7 107 84.1
Atru.chr13.973 Acer truncatum HOM05D001366 ORTHO05D005449 9.5e-45 183.3 107 84.1
FAN04G2369 Fragaria x ananassa HOM05D001366 ORTHO05D005449 9.5e-45 183.3 107 83.2
Glyma.02G216100 Glycine max HOM05D001366 ORTHO05D005449 9.5e-45 183.3 107 84.1
LjContig00408g0006754 Lotus japonicus HOM05D001366 ORTHO05D005449 9.5e-45 183.3 107 84.1
Phvul.008G183300 Phaseolus vulgaris HOM05D001366 ORTHO05D005449 9.5e-45 183.3 107 84.1
ATR0691G175 Amborella trichopoda HOM05D001366 ORTHO05D005449 1.2e-44 183.0 107 84.1
CARHR231830 Cardamine hirsuta HOM05D001366 ORTHO05D005449 1.2e-44 183.0 107 84.1
PSO761G0276 Papaver somniferum HOM05D001366 ORTHO05D005449 1.2e-44 183.0 107 85.0
Psat2g064960 Pisum sativum HOM05D001366 ORTHO05D005449 1.2e-44 183.0 107 84.1
Aqoxy2G03242 Aquilegia oxysepala HOM05D001366 ORTHO05D005449 1.6e-44 182.6 107 83.2
CANSAT25G2801 Cannabis sativa HOM05D001366 ORTHO05D005449 1.6e-44 182.6 107 84.1
MBI19_g32700_MAGBIO Magnolia biondii HOM05D001366 ORTHO05D005449 1.6e-44 182.6 107 83.2
BcaC09g50868 Brassica carinata HOM05D001366 ORTHO05D003220 2.1e-44 182.2 106 83.0
C01p19760 Brassica napus HOM05D001366 ORTHO05D003220 2.1e-44 182.2 106 83.0
BolC1t01904H Brassica oleracea HOM05D001366 ORTHO05D003220 2.1e-44 182.2 106 83.0
Gohir.D05G220900 Gossypium hirsutum HOM05D001366 ORTHO05D005449 2.1e-44 182.2 107 84.1
Gorai.009G228000 Gossypium raimondii HOM05D001366 ORTHO05D005449 2.1e-44 182.2 107 84.1
Sed0015347 Sechium edule HOM05D001366 ORTHO05D005449 2.1e-44 182.2 107 82.2
Sed0016266 Sechium edule HOM05D001366 ORTHO05D005449 2.1e-44 182.2 107 82.2
Thecc.08G074000 Theobroma cacao HOM05D001366 ORTHO05D005449 2.1e-44 182.2 107 84.1
FvH4_5g34180 Fragaria vesca HOM05D001366 ORTHO05D005449 2.8e-44 181.8 107 83.2
FAN18G2982 Fragaria x ananassa HOM05D001366 ORTHO05D005449 2.8e-44 181.8 107 83.2
HanXRQChr10g0277741 Helianthus annuus HOM05D001366 ORTHO05D005449 2.8e-44 181.8 107 83.2
Lsat_1_v5_gn_6_107360 Lactuca sativa HOM05D001366 ORTHO05D005449 2.8e-44 181.8 106 83.0
Rhsim07G0213700 Rhododendron simsii HOM05D001366 ORTHO05D005449 2.8e-44 181.8 107 83.2
A08p21460 Brassica napus HOM05D001366 ORTHO05D005449 3.6e-44 181.4 107 83.2
BolC8t48576H Brassica oleracea HOM05D001366 ORTHO05D005449 3.6e-44 181.4 107 83.2
BraA08t34095Z Brassica rapa HOM05D001366 ORTHO05D005449 3.6e-44 181.4 107 83.2
Eucgr.F00436 Eucalyptus grandis HOM05D001366 ORTHO05D005449 3.6e-44 181.4 107 84.1
Gorai.009G278800 Gossypium raimondii HOM05D001366 ORTHO05D005449 3.6e-44 181.4 107 84.1
Lalb_Chr08g0242611 Lupinus albus HOM05D001366 ORTHO05D005449 3.6e-44 181.4 107 84.1
Lalb_Chr11g0064851 Lupinus albus HOM05D001366 ORTHO05D005449 3.6e-44 181.4 107 84.1
MELO3C008106.2 Cucumis melo HOM05D001366 ORTHO05D005449 4.7e-44 181.0 107 81.3
Medtr7g005540 Medicago truncatula HOM05D001366 ORTHO05D005449 4.7e-44 181.0 107 82.2
CiPaw.08G057200 Carya illinoinensis HOM05D001366 ORTHO05D005449 6.2e-44 180.6 107 83.2
Potri.005G151700 Populus trichocarpa HOM05D001366 ORTHO05D005449 6.2e-44 180.6 107 83.2
Hund07854 Selenicereus undatus HOM05D001366 ORTHO05D005449 6.2e-44 180.6 107 84.1
TWI09G0135 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 6.2e-44 180.6 107 83.2
EL10Ac8g20405 Beta vulgaris HOM05D001366 ORTHO05D005449 8.1e-44 180.3 107 82.2
A01p15810 Brassica napus HOM05D001366 ORTHO05D003220 8.1e-44 180.3 105 82.9
BraA01t01516Z Brassica rapa HOM05D001366 ORTHO05D003220 8.1e-44 180.3 105 82.9
Cpa.g.sc21.43 Carica papaya HOM05D001366 ORTHO05D005449 8.1e-44 180.3 107 83.2
Haze_22489 Corylus avellana HOM05D001366 ORTHO05D005449 8.1e-44 180.3 107 83.2
Lalb_Chr23g0269931 Lupinus albus HOM05D001366 ORTHO05D005449 8.1e-44 180.3 107 83.2
EL10Ac9g20840 Beta vulgaris HOM05D001366 ORTHO05D005449 1.1e-43 179.9 107 83.2
CsaV3_2G033370 Cucumis sativus L. HOM05D001366 ORTHO05D005449 1.1e-43 179.9 107 80.4
Duzib041G0019 Durio zibethinus HOM05D001366 ORTHO05D005449 1.1e-43 179.9 107 82.2
ClCG11G014700 Citrullus lanatus HOM05D001366 ORTHO05D005449 1.4e-43 179.5 107 81.3
Gohir.A05G264200 Gossypium hirsutum HOM05D001366 ORTHO05D005449 1.4e-43 179.5 107 83.2
Os05g0107700 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D005449 1.4e-43 179.5 107 83.2
RcHm_v2.0_Chr7g0233761 Rosa chinensis HOM05D001366 ORTHO05D005449 1.4e-43 179.5 107 82.2
THA.LOC104799853 Tarenaya hassleriana HOM05D001366 ORTHO05D005449 1.4e-43 179.5 107 82.2
HPP92_010288 Vanilla planifolia HOM05D001366 ORTHO05D005449 1.4e-43 179.5 106 82.1
CsaV3_2G033350 Cucumis sativus L. HOM05D001366 ORTHO05D005449 1.8e-43 179.1 107 81.3
ECA240G3991 Erigeron canadensis HOM05D001366 ORTHO05D005449 1.8e-43 179.1 107 82.2
Gohir.D05G266700 Gossypium hirsutum HOM05D001366 ORTHO05D005449 1.8e-43 179.1 107 83.2
TWI73G1055 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 1.8e-43 179.1 107 82.2
arahy.Tifrunner.gnm1.ann1.8785AP Arachis hypogaea HOM05D001366 ORTHO05D005449 2.4e-43 178.7 107 81.3
arahy.Tifrunner.gnm1.ann1.CRNC3Y Arachis hypogaea HOM05D001366 ORTHO05D005449 2.4e-43 178.7 107 81.3
arahy.Tifrunner.gnm1.ann1.HU70H8 Arachis hypogaea HOM05D001366 ORTHO05D005449 2.4e-43 178.7 107 81.3
Ah.01g003970 Amaranthus hybridus HOM05D001366 ORTHO05D005449 4.0e-43 177.9 107 82.2
arahy.Tifrunner.gnm1.ann1.T41BVH Arachis hypogaea HOM05D001366 ORTHO05D005449 5.2e-43 177.6 107 81.3
HanXRQChr03g0063191 Helianthus annuus HOM05D001366 ORTHO05D005449 6.8e-43 177.2 107 82.2
TPR.G15622 Trifolium pratense HOM05D001366 ORTHO05D005449 8.9e-43 176.8 105 81.9
Zm00001eb356100 Zea mays HOM05D001366 ORTHO05D005449 8.9e-43 176.8 107 80.4
Zm00001eb139900 Zea mays HOM05D001366 ORTHO05D005449 4.4e-42 174.5 104 81.7
Gohir.A05G216500 Gossypium hirsutum HOM05D001366 ORTHO05D005449 5.8e-42 174.1 117 76.9
TPR.G38776 Trifolium pratense HOM05D001366 ORTHO05D005449 9.9e-42 173.3 107 79.4
TWI56G0439 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 2.2e-41 172.2 107 80.4
Os01g0970500 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D005449 2.9e-41 171.8 104 79.8
Rhsim02G0071900 Rhododendron simsii HOM05D001366 ORTHO05D005449 3.8e-41 171.4 123 72.4
Medtr5g066740 Medicago truncatula HOM05D001366 ORTHO05D005449 2.4e-40 168.7 107 77.6
Oeu038169.3 Olea europaea HOM05D001366 ORTHO05D005449 7.8e-39 163.7 165 57.6
Sabra05G0119200 Salix brachista HOM05D001366 ORTHO05D005449 7.8e-39 163.7 133 66.2
Actinidia19254 Actinidia chinensis HOM05D001366 ORTHO05D005449 1.5e-37 159.5 107 71.0
AUR62017035 Chenopodium quinoa HOM05D001366 ORTHO05D005449 4.3e-37 157.9 94 83.0
ECA246G1742 Erigeron canadensis HOM05D001366 ORTHO05D005449 5.6e-37 157.5 91 82.4
Psat0s2399g0160 Pisum sativum HOM05D001366 ORTHO05D005449 1.6e-36 156.0 104 71.2
SHI29728 Sapria himalayana HOM05D001366 ORTHO05D005449 2.1e-36 155.6 107 74.8
MD08G1203900 Malus domestica HOM05D001366 ORTHO05D005449 6.2e-36 154.1 94 79.8
Lsat_1_v5_gn_7_43741 Lactuca sativa HOM05D001366 ORTHO05D005449 1.5e-34 149.4 87 82.8
TAR381G0322 Trochodendron aralioides HOM05D001366 ORTHO05D005449 1.5e-34 149.4 107 71.0
Duzib116G0949 Durio zibethinus HOM05D001366 ORTHO05D005449 8.4e-33 143.7 107 69.2
Mapoly0012s0108 Marchantia polymorpha HOM05D001366 ORTHO05D005449 8.4e-33 143.7 107 59.8
AagrBONN_evm.TU.Sc2ySwM_228.5579 Anthoceros agrestis HOM05D001366 ORTHO05D005449 1.1e-32 143.3 107 59.8
Pp3c9_10830 Physcomitrium patens HOM05D001366 ORTHO05D005449 1.4e-32 142.9 107 60.7
Pp3c15_13540 Physcomitrium patens HOM05D001366 ORTHO05D005449 3.2e-32 141.7 107 59.8
AagrBONN_evm.TU.Sc2ySwM_228.3950 Anthoceros agrestis HOM05D001366 ORTHO05D005449 5.4e-32 141.0 107 59.8
SMO169G0007 Selaginella moellendorffii HOM05D001366 ORTHO05D005449 3.9e-30 134.8 106 57.5
Migut.B00439 Erythranthe guttata HOM05D001366 ORTHO05D005449 2.5e-29 132.1 107 62.6
Actinidia19617 Actinidia chinensis HOM05D001366 ORTHO05D005449 4.5e-26 121.3 71 83.1
RcHm_v2.0_Chr5g0012851 Rosa chinensis HOM05D001366 ORTHO05D005449 2.4e-24 115.5 107 55.1
unitig_8.g3420 Utricularia gibba HOM05D001366 ORTHO05D005449 5.4e-24 114.4 93 62.4
Dinv42590 Davidia involucrata HOM05D001366 ORTHO05D005449 1.6e-23 112.8 69 82.6
Lsat_1_v5_gn_4_60280 Lactuca sativa HOM05D001366 ORTHO05D005449 2.7e-23 112.1 66 81.8
vmacro04625 Vaccinium macrocarpon HOM05D001366 ORTHO05D005449 2.5e-21 105.5 60 86.7
QL09p018667 Quercus lobata HOM05D001366 ORTHO05D005449 3.3e-21 105.1 60 86.7
Ca_08744_v3 Cicer arietinum L. HOM05D001366 ORTHO05D005449 4.3e-21 104.8 60 86.7
VMungo0647G1399 Vigna mungo HOM05D001366 ORTHO05D005449 4.3e-21 104.8 60 86.7
AagrBONN_evm.TU.Sc2ySwM_368.1269 Anthoceros agrestis HOM05D001366 ORTHO05D005449 2.4e-19 99.0 105 46.7
Haze_27711 Corylus avellana HOM05D001366 ORTHO05D005449 2.4e-19 99.0 100 45.0
C06p07570 Brassica napus HOM05D001366 ORTHO05D005449 5.8e-18 94.4 107 55.1
BolC6t35845H Brassica oleracea HOM05D001366 ORTHO05D005449 5.8e-18 94.4 107 55.1
BcaC08g43388 Brassica carinata HOM05D001366 ORTHO05D005449 2.2e-17 92.4 84 56.0
Mapoly0067s0078 Marchantia polymorpha HOM05D001366 ORTHO05D005449 1.2e-15 86.7 79 49.4
HanXRQChr05g0143271 Helianthus annuus HOM05D001366 ORTHO05D005449 4.6e-15 84.7 51 80.4
AUR62014838 Chenopodium quinoa HOM05D001366 ORTHO05D005449 3.0e-14 82.0 62 67.7
Cre10.g424150 Chlamydomonas reinhardtii HOM05D001366 ORTHO05D005449 3.9e-14 81.6 100 37.0
Lsat_1_v5_gn_8_150280 Lactuca sativa HOM05D001675 ORTHO05D004161 1.1e-11 73.6 47 76.6
PRCOL_00001724 Prasinoderma coloniale HOM05D001366 ORTHO05D005449 6.5e-09 64.3 82 35.4
HanXRQChr11g0353851 Helianthus annuus HOM05D001366 ORTHO05D005449 1.1e-08 63.5 36 80.6
Lsat_1_v5_gn_8_45161 Lactuca sativa HOM05D001675 ORTHO05D001808 2.1e-07 59.3 38 78.9
TAR374G0947 Trochodendron aralioides HOM05D000025 ORTHO05D000040 1.0e-06 57.0 34 73.5


User provided reference genes

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