Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 0.0e+00 2568.9 1271 100.0
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 0.0e+00 2013.0 1373 75.1
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1991.9 1376 73.2
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 0.0e+00 1954.5 1182 81.6
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 0.0e+00 1894.0 1282 73.6
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 0.0e+00 1882.5 1284 72.0
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 0.0e+00 1875.1 1289 71.6
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 0.0e+00 1872.4 1248 73.9
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 0.0e+00 1872.1 1279 72.2
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1852.8 1275 72.1
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1852.0 1280 72.1
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 0.0e+00 1843.6 1286 71.2
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 0.0e+00 1839.7 1281 71.9
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1811.6 1292 70.6
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 0.0e+00 1809.3 1281 70.1
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 0.0e+00 1791.9 1276 69.0
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 0.0e+00 1790.0 1280 69.1
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 0.0e+00 1771.9 1278 69.2
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 0.0e+00 1767.7 1272 68.3
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1764.6 1272 68.3
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1761.9 1278 68.6
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 0.0e+00 1761.1 1278 68.4
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1756.1 1279 68.8
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1755.3 1272 68.2
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 0.0e+00 1746.9 1285 67.8
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1738.8 1276 66.2
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 0.0e+00 1733.8 1276 66.8
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1730.3 1275 66.0
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1728.8 1280 67.3
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 1727.2 1278 66.8
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1726.5 1284 67.2
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 0.0e+00 1724.5 1280 67.7
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1724.1 1274 65.9
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1723.4 1278 66.7
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1717.6 1282 66.5
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 0.0e+00 1717.2 1283 66.3
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1715.7 1289 66.3
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 0.0e+00 1715.3 1280 67.0
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 0.0e+00 1714.9 1277 65.2
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1714.1 1278 66.8
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1712.6 1304 65.6
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1710.3 1280 66.3
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 0.0e+00 1703.7 1281 65.1
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 0.0e+00 1701.8 1279 66.1
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 0.0e+00 1695.6 1273 64.5
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 0.0e+00 1689.1 1273 64.3
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 0.0e+00 1686.8 1280 64.5
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1686.0 1278 64.6
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 0.0e+00 1686.0 1239 68.7
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 0.0e+00 1684.8 1283 65.6
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1684.5 1278 64.6
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 0.0e+00 1684.5 1274 64.7
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1684.1 1274 64.9
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1682.5 1279 64.6
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1679.5 1273 65.4
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 0.0e+00 1679.1 1275 65.2
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1672.9 1278 64.6
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 0.0e+00 1663.7 1274 64.6
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 0.0e+00 1662.5 1284 65.0
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 0.0e+00 1653.6 1291 64.0
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1650.6 1276 63.8
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 0.0e+00 1637.9 1280 64.3
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1632.5 1357 59.6
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 0.0e+00 1630.2 1046 76.5
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 0.0e+00 1629.4 1281 63.2
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 0.0e+00 1621.3 1280 63.0
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 0.0e+00 1619.0 1280 63.0
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 0.0e+00 1618.2 1283 63.1
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1614.4 1281 63.3
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1611.7 1286 63.0
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1611.3 1286 62.8
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 0.0e+00 1608.2 1287 63.1
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1607.8 1287 62.7
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 0.0e+00 1605.1 1292 62.7
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 0.0e+00 1604.3 1278 62.8
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 0.0e+00 1597.0 1281 63.4
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 0.0e+00 1596.6 1280 62.1
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 0.0e+00 1585.5 1280 62.0
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 0.0e+00 1573.9 1050 73.7
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 0.0e+00 1568.1 1274 61.8
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 0.0e+00 1567.0 1227 63.6
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1562.4 1279 59.9
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 0.0e+00 1562.4 1279 59.7
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 0.0e+00 1546.6 1274 61.5
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1538.1 1202 65.1
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1521.1 1281 59.8
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 0.0e+00 1504.6 1165 65.1
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 0.0e+00 1504.2 1293 58.9
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 0.0e+00 1493.8 1273 59.5
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 0.0e+00 1468.0 1045 69.1
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1409.0 1034 68.0
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 0.0e+00 1383.6 1272 55.8
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1357.8 1273 53.7
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 0.0e+00 1336.2 1275 54.5
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 0.0e+00 1280.8 1276 54.1
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 0.0e+00 1232.6 832 72.6
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 0.0e+00 1222.2 1229 52.1
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 0.0e+00 1210.7 766 78.3
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 0.0e+00 1207.6 769 79.8
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 0.0e+00 1194.5 1281 51.7
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1167.5 943 62.5
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 0.0e+00 1138.3 878 63.0
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 0.0e+00 1119.8 777 71.0
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 0.0e+00 1103.2 833 66.0
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 0.0e+00 1089.7 811 68.1
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1083.2 945 59.9
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 8.7e-312 1074.7 832 63.2
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 6.1e-311 1071.2 1342 45.9
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 1.6e-308 1063.1 1213 47.3
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 8.9e-307 1057.4 1297 45.9
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 9.2e-304 1047.3 1344 44.5
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 2.8e-300 1035.8 945 58.0
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 3.2e-296 1022.3 1342 45.0
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 2.3e-286 989.6 1157 48.9
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.1e-275 954.1 694 67.1
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 4.1e-227 792.7 497 77.1
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 2.7e-223 780.0 1466 35.7
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 4.0e-214 749.6 555 66.3
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 1.5e-205 721.1 625 59.2
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.6e-202 711.1 504 69.0
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 3.4e-197 693.3 615 56.4
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 5.2e-182 642.9 478 68.6
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 2.0e-133 481.5 404 63.4
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 7.4e-120 436.4 370 63.0
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 7.2e-115 419.9 324 66.4
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 1.1e-110 406.0 336 61.6
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 5.7e-96 357.1 1382 26.5
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 6.6e-84 317.0 1242 25.1
Os07g0626900 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 4.3e-75 287.7 261 56.7
Nitab4.5_0010573g0010 Nicotiana tabacum HOM05D004874 ORTHO05D006796 1.9e-46 192.6 151 60.9
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 1.6e-42 179.5 244 47.1
FvH4_7g04731 Fragaria vesca HOM05D004874 ORTHO05D006796 7.6e-40 170.6 129 67.4
Solyc05g055570.3 Solanum lycopersicum HOM05D004874 ORTHO05D014502 1.3e-28 133.3 101 66.3
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 7.6e-24 117.5 76 68.4
unitig_899.g14599 Utricularia gibba HOM05D002815 ORTHO05D025745 3.8e-15 88.6 69 59.4
Nitab4.5_0000904g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 5.5e-14 84.7 45 84.4
Zm00001eb137300 Zea mays HOM05D004874 ORTHO05D006796 5.5e-14 84.7 67 59.7
HanXRQChr12g0385291 Helianthus annuus HOM05D004874 ORTHO05D006796 7.4e-11 74.3 63 61.9
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 4.8e-10 71.6 48 66.7
BcaC06g36156 Brassica carinata HOM05D004874 ORTHO05D014502 8.2e-10 70.9 53 64.2
BcaC09g48952 Brassica carinata HOM05D004874 ORTHO05D014502 2.4e-09 69.3 53 62.3
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 3.1e-09 68.9 209 32.1
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 4.1e-09 68.6 95 40.0
A01p36370 Brassica napus HOM05D004874 ORTHO05D014502 4.5e-08 65.1 46 67.4
A02p42430 Brassica napus HOM05D004874 ORTHO05D014502 4.5e-08 65.1 46 67.4
BraA01t04208Z Brassica rapa HOM05D004874 ORTHO05D014502 4.5e-08 65.1 46 67.4
BraA02t09174Z Brassica rapa HOM05D004874 ORTHO05D014502 4.5e-08 65.1 46 67.4
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 4.5e-08 65.1 305 26.6
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 1.0e-07 63.9 151 29.1
BolC7t41133H Brassica oleracea HOM05D004874 ORTHO05D014502 1.7e-07 63.2 46 65.2
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 2.2e-07 62.8 94 40.4
BcaC04g21885 Brassica carinata HOM05D004874 ORTHO05D014502 2.9e-07 62.4 49 59.2
C07p07140 Brassica napus HOM05D004874 ORTHO05D014502 2.9e-07 62.4 46 63.0
C01p44130 Brassica napus HOM05D004874 ORTHO05D014502 5.0e-07 61.6 46 63.0
Cre01.g007150 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 1.4e-06 60.1 113 32.7
C09p26200 Brassica napus HOM05D004874 ORTHO05D014502 1.9e-06 59.7 46 60.9
BolC9t55523H Brassica oleracea HOM05D004874 ORTHO05D014502 1.9e-06 59.7 46 60.9
Zm00001eb182000 Zea mays HOM05D003906 ORTHO05D004776 1.9e-06 59.7 194 26.8
PRCOL_00001849 Prasinoderma coloniale HOM05D004797 ORTHO05D005752 7.2e-06 57.8 176 30.1


User provided reference genes

Program Settings