Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D02127 Erythranthe guttata HOM05D006496 ORTHO05D008390 6.6e-168 594.0 302 100.0
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 4.3e-74 282.3 279 54.5
Oeu058535.1 Olea europaea HOM05D006496 ORTHO05D008390 1.7e-59 233.8 294 46.3
Sopen11g030740 Solanum pennellii HOM05D006496 ORTHO05D008390 5.6e-58 228.8 292 46.9
Cc01_g12300 Coffea canephora HOM05D006496 ORTHO05D008390 2.6e-55 219.9 289 44.3
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 8.4e-54 214.9 294 42.2
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 2.7e-52 209.9 291 43.0
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 7.8e-52 208.4 311 44.4
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 1.1e-50 204.5 282 45.0
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 1.4e-48 197.6 299 40.8
Actinidia37238 Actinidia chinensis HOM05D006496 ORTHO05D008390 1.8e-48 197.2 295 42.4
Nitab4.5_0003498g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 3.8e-46 189.5 258 42.2
Actinidia07064 Actinidia chinensis HOM05D006496 ORTHO05D008390 1.3e-43 181.0 274 42.3
Lj2A1055T49 Lonicera japonica HOM05D006496 ORTHO05D008390 1.7e-43 180.6 284 42.3
Nitab4.5_0009215g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 3.3e-42 176.4 317 38.2
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 6.2e-41 172.2 171 53.8
MSTRG.21183 Avicennia marina HOM05D006496 ORTHO05D008390 4.0e-40 169.5 153 56.9
SGA_v2.0_scaffold61G21263 Striga asiatica HOM05D006496 ORTHO05D008390 5.3e-40 169.1 241 42.3
Lsat_1_v5_gn_9_22140 Lactuca sativa HOM05D006496 ORTHO05D008390 1.1e-37 161.4 272 37.1
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 1.7e-35 154.1 267 36.3
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 3.9e-35 152.9 313 34.8
HanXRQChr01g0009851 Helianthus annuus HOM05D006496 ORTHO05D008390 1.9e-34 150.6 256 37.9
Solyc11g073080.3 Solanum lycopersicum HOM05D006496 ORTHO05D008390 4.3e-34 149.4 218 44.0
AUR62009623 Chenopodium quinoa HOM05D006496 ORTHO05D008390 4.8e-33 146.0 287 35.5
AUR62001835 Chenopodium quinoa HOM05D006496 ORTHO05D008390 6.2e-33 145.6 287 35.5
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.1e-32 144.8 288 33.7
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 2.4e-32 143.7 272 35.7
ECA247G0375 Erigeron canadensis HOM05D006496 ORTHO05D008390 4.0e-32 142.9 296 33.8
HanXRQChr01g0009831 Helianthus annuus HOM05D006496 ORTHO05D008390 4.0e-32 142.9 307 32.9
HanXRQChr04g0106921 Helianthus annuus HOM05D006496 ORTHO05D008390 5.3e-32 142.5 269 34.6
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 9.0e-32 141.7 285 35.4
MSTRG.21184 Avicennia marina HOM05D006496 ORTHO05D008390 1.2e-31 141.4 112 69.6
Peaxi162Scf00411g00117 Petunia axillaris HOM05D006496 ORTHO05D008390 2.2e-30 137.1 186 41.4
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 1.1e-29 134.8 310 32.9
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 1.9e-29 134.0 320 32.2
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 3.2e-29 133.3 320 32.8
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 4.6e-28 129.4 282 33.0
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 6.0e-28 129.0 267 34.5
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 6.0e-28 129.0 321 32.4
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 1.3e-27 127.9 261 34.9
DCAR_018892 Daucus carota HOM05D006496 ORTHO05D008390 1.1e-26 124.8 234 32.9
FAN11G0827 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.3e-25 121.3 331 31.4
Prupe.6G084200 Prunus persica HOM05D006496 ORTHO05D008390 2.1e-25 120.6 252 34.5
Ciclev10028859m.g Citrus clementina HOM05D006496 ORTHO05D008390 3.7e-25 119.8 281 31.0
MD11G1113700 Malus domestica HOM05D006496 ORTHO05D008390 6.2e-25 119.0 288 33.7
FvH4_3g35010 Fragaria vesca HOM05D006496 ORTHO05D008390 1.4e-24 117.9 332 30.7
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 1.8e-24 117.5 295 31.2
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 1.8e-24 117.5 295 31.2
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 3.1e-24 116.7 290 32.4
FAN16G2573 Fragaria x ananassa HOM05D006496 ORTHO05D008390 4.0e-24 116.3 347 29.7
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 9.0e-24 115.2 290 29.3
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 1.2e-23 114.8 279 30.5
Atru.chr3.3823 Acer truncatum HOM05D006496 ORTHO05D008390 3.4e-23 113.2 325 30.2
FAN21G2388 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.4e-23 113.2 336 30.4
THA.LOC104810806 Tarenaya hassleriana HOM05D006496 ORTHO05D008390 2.9e-22 110.2 296 30.7
CSS0005064 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 4.9e-22 109.4 121 51.2
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 6.5e-22 109.0 257 30.7
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 3.2e-21 106.7 250 29.6
CARHR273380 Cardamine hirsuta HOM05D006496 ORTHO05D008390 5.5e-21 105.9 251 30.3
EL10Ac7g15965 Beta vulgaris HOM05D006496 ORTHO05D008390 9.3e-21 105.1 280 28.9
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 2.1e-20 104.0 269 30.1
Aa31sc23G160 Aethionema arabicum HOM05D006496 ORTHO05D008390 2.7e-20 103.6 253 29.6
Dinv06143 Davidia involucrata HOM05D021242 ORTHO05D022491 2.7e-20 103.6 125 45.6
FAN16G0777 Fragaria x ananassa HOM05D006496 ORTHO05D008390 6.0e-20 102.4 297 29.0
BcaB08g36218 Brassica carinata HOM05D006496 ORTHO05D008390 1.8e-19 100.9 340 29.1
Carub.0008s2046 Capsella rubella HOM05D006496 ORTHO05D008390 3.9e-19 99.8 251 30.7
BcaC04g19631 Brassica carinata HOM05D006496 ORTHO05D008390 8.7e-19 98.6 332 29.5
CiPaw.13G099300 Carya illinoinensis HOM05D006496 ORTHO05D008390 1.1e-18 98.2 338 28.4
Thhalv10014093m.g Eutrema salsugineum HOM05D006496 ORTHO05D008390 3.3e-18 96.7 251 28.7
Medtr2g096520 Medicago truncatula HOM05D006496 ORTHO05D008390 3.3e-18 96.7 291 26.8
A03p11480 Brassica napus HOM05D006496 ORTHO05D008390 4.3e-18 96.3 253 27.3
BolC9t58098H Brassica oleracea HOM05D006496 ORTHO05D008390 4.3e-18 96.3 308 29.9
BraA03t10462Z Brassica rapa HOM05D006496 ORTHO05D008390 4.3e-18 96.3 253 27.3
C09p52290 Brassica napus HOM05D006496 ORTHO05D008390 5.7e-18 95.9 308 29.5
DCAR_015607 Daucus carota HOM05D006496 ORTHO05D008390 5.7e-18 95.9 279 27.2
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 7.4e-18 95.5 190 32.1
A10p17060 Brassica napus HOM05D006496 ORTHO05D008390 2.1e-17 94.0 332 27.7
Sp6g21470 Schrenkiella parvula HOM05D006496 ORTHO05D008390 2.8e-17 93.6 344 28.2
BolC3t13791H Brassica oleracea HOM05D006496 ORTHO05D008390 1.1e-16 91.7 253 26.5
BcaC01g06549 Brassica carinata HOM05D006496 ORTHO05D008390 2.4e-16 90.5 253 26.5
C03p13280 Brassica napus HOM05D006496 ORTHO05D008390 2.4e-16 90.5 253 26.5
BraA10t43786Z Brassica rapa HOM05D006496 ORTHO05D008390 2.4e-16 90.5 332 27.4
COL.COLO4_18451 Corchorus olitorius HOM05D006496 ORTHO05D008390 3.1e-16 90.1 171 35.7
FAN21G0875 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.0e-15 87.4 370 24.9
Psat5g284080 Pisum sativum HOM05D006496 ORTHO05D008390 2.0e-15 87.4 321 25.2
Duzib168G2252 Durio zibethinus HOM05D006496 ORTHO05D008390 3.4e-15 86.7 173 31.8
Ca_01342_v3 Cicer arietinum L. HOM05D006496 ORTHO05D008390 4.5e-15 86.3 189 34.4
AT5G59800 Arabidopsis thaliana HOM05D006496 ORTHO05D008390 1.0e-14 85.1 306 28.1
Lalb_Chr22g0349991 Lupinus albus HOM05D006496 ORTHO05D008390 3.2e-13 80.1 206 28.6
Phvul.004G007200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 2.1e-12 77.4 198 27.8
FAN25G1110 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.0e-11 75.1 197 29.4
TPR.G34303 Trifolium pratense HOM05D006496 ORTHO05D008390 1.3e-11 74.7 213 27.2
Psat5g284120 Pisum sativum HOM05D006496 ORTHO05D008390 1.8e-11 74.3 207 28.0
Sabra09G0018800 Salix brachista HOM05D006496 ORTHO05D008390 3.0e-11 73.6 154 33.8
Dinv06145 Davidia involucrata HOM05D006496 ORTHO05D008390 1.5e-10 71.2 93 47.3
Thecc.09G327500 Theobroma cacao HOM05D006496 ORTHO05D008390 1.9e-10 70.9 189 30.7
Lj3g0006193 Lotus japonicus HOM05D006496 ORTHO05D008390 7.4e-10 68.9 69 52.2
arahy.Tifrunner.gnm1.ann1.4RYS79 Arachis hypogaea HOM05D006496 ORTHO05D008390 2.2e-09 67.4 63 52.4
arahy.Tifrunner.gnm1.ann1.7PT1R0 Arachis hypogaea HOM05D006496 ORTHO05D008390 2.2e-09 67.4 63 52.4
Duzib093G1405 Durio zibethinus HOM05D006496 ORTHO05D004692 4.8e-09 66.2 156 30.1
Phvul.004G006200 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 1.1e-08 65.1 189 28.6
Glyma.07G118700 Glycine max HOM05D006496 ORTHO05D008390 1.4e-08 64.7 206 25.2
Glyma.13G333300 Glycine max HOM05D006496 ORTHO05D008390 1.4e-08 64.7 45 62.2
Medtr6g054960 Medicago truncatula HOM05D003520 ORTHO05D003332 1.8e-08 64.3 211 27.5
A02p06850 Brassica napus HOM05D006496 ORTHO05D008390 3.1e-08 63.5 145 33.8
C02p12140 Brassica napus HOM05D006496 ORTHO05D008390 3.1e-08 63.5 145 33.8
BraA02t05763Z Brassica rapa HOM05D006496 ORTHO05D008390 5.3e-08 62.8 145 33.8
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 6.9e-08 62.4 136 31.6
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 9.0e-08 62.0 142 31.0
Prupe.6G084500 Prunus persica HOM05D006496 ORTHO05D008390 1.2e-07 61.6 51 58.8
VMungo0464G2068 Vigna mungo HOM05D006496 ORTHO05D008390 1.2e-07 61.6 200 26.5
TAR623G1294 Trochodendron aralioides HOM05D004190 ORTHO05D004692 1.5e-07 61.2 149 30.9
Lj2g0020727 Lotus japonicus HOM05D003520 ORTHO05D003332 2.0e-07 60.8 156 30.1
Phvul.L002943 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 7.7e-07 58.9 45 57.8
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 1.0e-06 58.5 165 28.5
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 1.0e-06 58.5 134 29.1
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 1.3e-06 58.2 154 28.6
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 1.7e-06 57.8 138 29.0
Duzib170G0106 Durio zibethinus HOM05D004190 ORTHO05D004692 2.2e-06 57.4 178 26.4
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 2.9e-06 57.0 203 26.6
BraA03t10485Z Brassica rapa HOM05D004190 ORTHO05D004692 3.8e-06 56.6 138 28.3
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 3.8e-06 56.6 136 30.1
Thecc.09G321100 Theobroma cacao HOM05D004190 ORTHO05D004692 3.8e-06 56.6 161 26.7
TWI81G1024 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 3.8e-06 56.6 170 30.6
QL01p033212 Quercus lobata HOM05D006496 ORTHO05D008390 5.0e-06 56.2 132 28.8
TPR.G34315 Trifolium pratense HOM05D006496 ORTHO05D008390 5.0e-06 56.2 45 60.0
Aa31LG4G15580 Aethionema arabicum HOM05D004190 ORTHO05D004692 6.5e-06 55.8 144 28.5
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 6.5e-06 55.8 139 30.9
Sp5g15120 Schrenkiella parvula HOM05D004190 ORTHO05D004692 6.5e-06 55.8 180 27.2
Sopen11g027450 Solanum pennellii HOM05D004190 ORTHO05D004692 6.5e-06 55.8 189 29.1
THA.LOC104814877 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 6.5e-06 55.8 198 28.3
Medtr4g008590 Medicago truncatula HOM05D006496 ORTHO05D008390 8.5e-06 55.5 61 45.9


User provided reference genes

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