Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.C00314 Erythranthe guttata HOM05D024404 ORTHO05D190053 2.0e-64 249.2 149 100.0
Migut.C00323 Erythranthe guttata HOM05D024404 ORTHO05D189497 4.1e-54 214.9 147 92.5
Migut.L00003 Erythranthe guttata HOM05D024404 ORTHO05D190065 7.8e-53 210.7 147 80.3
Migut.C00322 Erythranthe guttata HOM05D024404 ORTHO05D190586 8.0e-50 200.7 135 83.0
Migut.C00313 Erythranthe guttata HOM05D024404 ORTHO05D190750 1.1e-46 190.3 130 82.3
Migut.C00315 Erythranthe guttata HOM05D039034 ORTHO05D189454 8.7e-12 74.3 77 53.2
Migut.I00611 Erythranthe guttata HOM05D000422 ORTHO05D001248 1.8e-09 66.6 87 54.0
CAN.G521.3 Capsicum annuum HOM05D000422 ORTHO05D001248 3.1e-09 65.9 86 52.3
Nitab4.5_0003119g0020 Nicotiana tabacum HOM05D000422 ORTHO05D001248 3.1e-09 65.9 86 52.3
Nitab4.5_0009686g0040 Nicotiana tabacum HOM05D000422 ORTHO05D001248 3.1e-09 65.9 86 52.3
Nitab4.5_0000663g0180 Nicotiana tabacum HOM05D000422 ORTHO05D001248 1.5e-08 63.5 86 51.2
Nitab4.5_0002450g0030 Nicotiana tabacum HOM05D000422 ORTHO05D001248 1.5e-08 63.5 86 51.2
Peaxi162Scf00314g00528 Petunia axillaris HOM05D000422 ORTHO05D001248 1.5e-08 63.5 86 51.2
Solyc03g118340.3 Solanum lycopersicum HOM05D000422 ORTHO05D001248 1.5e-08 63.5 87 50.6
Sopen03g037240 Solanum pennellii HOM05D000422 ORTHO05D001248 1.5e-08 63.5 87 50.6
Manes.06G125800 Manihot esculenta HOM05D000422 ORTHO05D001248 2.0e-08 63.2 79 53.2
PGSC0003DMG400014248 Solanum tuberosum HOM05D000422 ORTHO05D001248 2.0e-08 63.2 87 50.6
Sc04g0000250 Simmondsia chinensis HOM05D000422 ORTHO05D001248 2.6e-08 62.8 86 51.2
PGSC0003DMG402014476 Solanum tuberosum HOM05D000422 ORTHO05D001248 3.4e-08 62.4 86 51.2
Peaxi162Scf01168g00111 Petunia axillaris HOM05D000422 ORTHO05D001248 4.5e-08 62.0 86 51.2
Manes.14G045700 Manihot esculenta HOM05D000422 ORTHO05D001248 5.8e-08 61.6 79 51.9
Hund10055 Selenicereus undatus HOM05D000422 ORTHO05D001248 9.9e-08 60.8 86 50.0
Aqoxy3G01886 Aquilegia oxysepala HOM05D000422 ORTHO05D001248 1.3e-07 60.5 84 48.8
Ah.02g114650 Amaranthus hybridus HOM05D000422 ORTHO05D001248 1.7e-07 60.1 86 48.8
Ah.11g046770 Amaranthus hybridus HOM05D000422 ORTHO05D001248 1.7e-07 60.1 86 48.8
Psat5g054560 Pisum sativum HOM05D000422 ORTHO05D001248 1.7e-07 60.1 79 53.2
Solyc12g042060.3 Solanum lycopersicum HOM05D000422 ORTHO05D001248 1.7e-07 60.1 86 50.0
Sopen12g021150 Solanum pennellii HOM05D000422 ORTHO05D001248 1.7e-07 60.1 86 50.0
Aa31LG3G7410 Aethionema arabicum HOM05D000422 ORTHO05D001248 2.2e-07 59.7 89 51.7
CAN.G843.23 Capsicum annuum HOM05D000422 ORTHO05D001248 2.2e-07 59.7 87 48.3
DCAR_025657 Daucus carota HOM05D000422 ORTHO05D001248 2.2e-07 59.7 86 50.0
SalBow1G7968 Salvia bowleyana HOM05D000422 ORTHO05D001248 2.2e-07 59.7 84 51.2
THA.LOC104811561 Tarenaya hassleriana HOM05D000422 ORTHO05D001248 2.2e-07 59.7 86 50.0
Aqoxy7G02623 Aquilegia oxysepala HOM05D000422 ORTHO05D001248 2.9e-07 59.3 84 47.6
MSTRG.4638 Avicennia marina HOM05D000422 ORTHO05D001248 2.9e-07 59.3 86 48.8
A03p16460 Brassica napus HOM05D000422 ORTHO05D001248 2.9e-07 59.3 86 50.0
C03p19350 Brassica napus HOM05D000422 ORTHO05D001248 2.9e-07 59.3 86 50.0
BolC3t14321H Brassica oleracea HOM05D000422 ORTHO05D001248 2.9e-07 59.3 86 50.0
BraA03t10935Z Brassica rapa HOM05D000422 ORTHO05D001248 2.9e-07 59.3 86 50.0
CARHR257340 Cardamine hirsuta HOM05D000422 ORTHO05D001248 2.9e-07 59.3 86 50.0
Thhalv10012603m.g Eutrema salsugineum HOM05D000422 ORTHO05D001248 2.9e-07 59.3 86 50.0
Sp6g13090 Schrenkiella parvula HOM05D000422 ORTHO05D001248 2.9e-07 59.3 86 50.0
unitig_52.g17037 Utricularia gibba HOM05D000422 ORTHO05D001248 2.9e-07 59.3 86 50.0
Lj1g0019828 Lotus japonicus HOM05D000422 ORTHO05D001248 3.8e-07 58.9 79 51.9
Oeu017192.1 Olea europaea HOM05D000422 ORTHO05D001248 3.8e-07 58.9 86 48.8
C01p31380 Brassica napus HOM05D000422 ORTHO05D001248 4.9e-07 58.5 89 48.3
COL.COLO4_37236 Corchorus olitorius HOM05D000422 ORTHO05D001248 4.9e-07 58.5 78 52.6
MELO3C020666.2 Cucumis melo HOM05D000422 ORTHO05D001248 4.9e-07 58.5 82 50.0
DCAR_016352 Daucus carota HOM05D000422 ORTHO05D001248 4.9e-07 58.5 86 50.0
Nn4g22167 Nelumbo nucifera HOM05D000422 ORTHO05D001248 4.9e-07 58.5 79 50.6
Oeu013654.1 Olea europaea HOM05D000422 ORTHO05D001248 4.9e-07 58.5 86 48.8
Oeu013655.1 Olea europaea HOM05D000422 ORTHO05D001248 4.9e-07 58.5 86 48.8
Oeu061251.2 Olea europaea HOM05D000422 ORTHO05D001248 4.9e-07 58.5 86 48.8
CsaV3_1G033930 Cucumis sativus L. HOM05D000422 ORTHO05D001248 6.4e-07 58.2 82 50.0
Migut.D01192 Erythranthe guttata HOM05D000422 ORTHO05D001248 6.4e-07 58.2 82 51.2
Gohir.A07G047400 Gossypium hirsutum HOM05D000422 ORTHO05D001248 6.4e-07 58.2 79 51.9
Gohir.D07G051600 Gossypium hirsutum HOM05D000422 ORTHO05D001248 6.4e-07 58.2 79 51.9
Gorai.001G054700 Gossypium raimondii HOM05D000422 ORTHO05D001248 6.4e-07 58.2 79 51.9
HanXRQChr05g0154561 Helianthus annuus HOM05D000422 ORTHO05D001248 6.4e-07 58.2 86 48.8
HanXRQChr08g0235061 Helianthus annuus HOM05D000422 ORTHO05D001248 6.4e-07 58.2 86 48.8
PGR004G1503 Punica granatum HOM05D000422 ORTHO05D001248 6.4e-07 58.2 79 51.9
PGR044G1784 Punica granatum HOM05D000422 ORTHO05D001248 6.4e-07 58.2 79 51.9
Hund02499 Selenicereus undatus HOM05D000422 ORTHO05D001248 6.4e-07 58.2 86 48.8
PGSC0003DMG400021039 Solanum tuberosum HOM05D000422 ORTHO05D001248 6.4e-07 58.2 79 51.9
arahy.Tifrunner.gnm1.ann1.40Y6RI Arachis hypogaea HOM05D000422 ORTHO05D001248 8.4e-07 57.8 87 50.6
arahy.Tifrunner.gnm1.ann1.PT1JHX Arachis hypogaea HOM05D000422 ORTHO05D001248 8.4e-07 57.8 87 50.6
A01p25180 Brassica napus HOM05D000422 ORTHO05D001248 8.4e-07 57.8 90 47.8
BraA01t02426Z Brassica rapa HOM05D000422 ORTHO05D001248 8.4e-07 57.8 90 47.8
AUR62009519 Chenopodium quinoa HOM05D000422 ORTHO05D001248 8.4e-07 57.8 86 48.8
AUR62009520 Chenopodium quinoa HOM05D000422 ORTHO05D001248 8.4e-07 57.8 86 48.8
AUR62034768 Chenopodium quinoa HOM05D000422 ORTHO05D001248 8.4e-07 57.8 86 48.8
Duzib205G0028 Durio zibethinus HOM05D000422 ORTHO05D001248 8.4e-07 57.8 79 51.9
Gohir.A03G056700 Gossypium hirsutum HOM05D000422 ORTHO05D001248 8.4e-07 57.8 79 51.9
HanXRQChr09g0273921 Helianthus annuus HOM05D000422 ORTHO05D001248 8.4e-07 57.8 86 48.8
Lsat_1_v5_gn_5_15861 Lactuca sativa HOM05D000422 ORTHO05D001248 8.4e-07 57.8 86 48.8
Lalb_Chr23g0272901 Lupinus albus HOM05D000422 ORTHO05D001248 8.4e-07 57.8 79 51.9
Atru.chr6.1902 Acer truncatum HOM05D000422 ORTHO05D001248 1.1e-06 57.4 79 51.9
CiPaw.11G001300 Carya illinoinensis HOM05D000422 ORTHO05D001248 1.1e-06 57.4 78 51.3
Duzib068G0301 Durio zibethinus HOM05D000422 ORTHO05D001248 1.1e-06 57.4 86 48.8
HanXRQChr16g0498881 Helianthus annuus HOM05D000422 ORTHO05D001248 1.1e-06 57.4 82 50.0
Medtr3g498725 Medicago truncatula HOM05D000422 ORTHO05D001248 1.1e-06 57.4 79 50.6
Sabra12G0078200 Salix brachista HOM05D000422 ORTHO05D001248 1.1e-06 57.4 82 48.8
THA.LOC104821539 Tarenaya hassleriana HOM05D000422 ORTHO05D001248 1.1e-06 57.4 90 47.8
unitig_62.g23818 Utricularia gibba HOM05D000422 ORTHO05D001248 1.1e-06 57.4 86 48.8
ATR0582G302 Amborella trichopoda HOM05D000422 ORTHO05D001248 1.4e-06 57.0 79 49.4
BcaB05g22981 Brassica carinata HOM05D000422 ORTHO05D001248 1.4e-06 57.0 88 47.7
BcaC09g49911 Brassica carinata HOM05D000422 ORTHO05D001248 1.4e-06 57.0 89 48.3
BolC1t03075H Brassica oleracea HOM05D000422 ORTHO05D001248 1.4e-06 57.0 89 48.3
Eucgr.K02198 Eucalyptus grandis HOM05D000422 ORTHO05D001248 1.4e-06 57.0 79 51.9
Hma1.2p1_1070F.1_g254130 Hydrangea macrophylla HOM05D000422 ORTHO05D001248 1.4e-06 57.0 86 48.8
Hma1.2p1_1171F.1_g263510 Hydrangea macrophylla HOM05D000422 ORTHO05D001248 1.4e-06 57.0 86 48.8
Potri.012G105900 Populus trichocarpa HOM05D000422 ORTHO05D001248 1.4e-06 57.0 78 50.0
Sabra15G0125300 Salix brachista HOM05D000422 ORTHO05D001248 1.4e-06 57.0 84 48.8
TAR629G2448 Trochodendron aralioides HOM05D000422 ORTHO05D001248 1.4e-06 57.0 78 52.6
BcaB01g00774 Brassica carinata HOM05D000422 ORTHO05D001248 1.9e-06 56.6 91 46.2
A06p18880 Brassica napus HOM05D000422 ORTHO05D001248 1.9e-06 56.6 91 46.2
C08p23840 Brassica napus HOM05D000422 ORTHO05D001248 1.9e-06 56.6 91 46.2
BraA06t24971Z Brassica rapa HOM05D000422 ORTHO05D001248 1.9e-06 56.6 91 46.2
CSS0021948 Camellia sinensis var. sinensis HOM05D000422 ORTHO05D001248 1.9e-06 56.6 86 48.8
Gohir.D03G109800 Gossypium hirsutum HOM05D000422 ORTHO05D001248 1.9e-06 56.6 79 50.6
Gorai.003G116200 Gossypium raimondii HOM05D000422 ORTHO05D001248 1.9e-06 56.6 79 50.6
Lj4g0023906 Lotus japonicus HOM05D000422 ORTHO05D001248 1.9e-06 56.6 78 50.0
MBI07_g07341_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D001248 1.9e-06 56.6 79 49.4
Sed0011803 Sechium edule HOM05D000422 ORTHO05D001248 1.9e-06 56.6 89 47.2
Sc22g0003500 Simmondsia chinensis HOM05D000422 ORTHO05D001248 1.9e-06 56.6 82 50.0
THA.LOC104798922 Tarenaya hassleriana HOM05D000422 ORTHO05D001248 1.9e-06 56.6 89 48.3
TAR622G0976 Trochodendron aralioides HOM05D000422 ORTHO05D001248 1.9e-06 56.6 78 51.3
AL8G25110 Arabidopsis lyrata HOM05D000422 ORTHO05D001248 2.4e-06 56.2 86 47.7
AT5G50920 Arabidopsis thaliana HOM05D000422 ORTHO05D001248 2.4e-06 56.2 86 47.7
MSTRG.9368 Avicennia marina HOM05D000422 ORTHO05D001248 2.4e-06 56.2 86 46.5
EL10Ac5g11304 Beta vulgaris HOM05D000422 ORTHO05D001248 2.4e-06 56.2 86 47.7
BcaC07g39362 Brassica carinata HOM05D000422 ORTHO05D001248 2.4e-06 56.2 91 46.2
BolC8t50010H Brassica oleracea HOM05D000422 ORTHO05D001248 2.4e-06 56.2 91 46.2
CSS0009915 Camellia sinensis var. sinensis HOM05D000422 ORTHO05D001248 2.4e-06 56.2 86 48.8
CSS0044818 Camellia sinensis var. sinensis HOM05D000422 ORTHO05D001248 2.4e-06 56.2 86 48.8
Lalb_Chr11g0069261 Lupinus albus HOM05D000422 ORTHO05D001248 2.4e-06 56.2 78 51.3
Potri.015G105100 Populus trichocarpa HOM05D000422 ORTHO05D001248 2.4e-06 56.2 78 47.4
Sed0016051 Sechium edule HOM05D000422 ORTHO05D001248 2.4e-06 56.2 82 50.0
Thecc.03G138700 Theobroma cacao HOM05D000422 ORTHO05D001248 2.4e-06 56.2 78 51.3
Carub.0008s1093 Capsella rubella HOM05D000422 ORTHO05D001248 3.2e-06 55.8 86 47.7
CiPaw.12G001600 Carya illinoinensis HOM05D000422 ORTHO05D001248 3.2e-06 55.8 78 51.3
Ca_10884_v3 Cicer arietinum L. HOM05D000422 ORTHO05D001248 3.2e-06 55.8 78 51.3
FvH4_5g09290 Fragaria vesca HOM05D000422 ORTHO05D001248 3.2e-06 55.8 79 50.6
FAN04G3089 Fragaria x ananassa HOM05D000422 ORTHO05D001248 3.2e-06 55.8 79 50.6
FAN08G0605 Fragaria x ananassa HOM05D000422 ORTHO05D001248 3.2e-06 55.8 79 50.6
FAN18G4242 Fragaria x ananassa HOM05D000422 ORTHO05D001248 3.2e-06 55.8 79 50.6
Medtr3g102830 Medicago truncatula HOM05D000422 ORTHO05D001248 3.2e-06 55.8 78 51.3
Os12g0230100 Oryza sativa ssp. japonica HOM05D000422 ORTHO05D001248 3.2e-06 55.8 78 44.9
Zm00001eb421360 Zea mays HOM05D000422 ORTHO05D001248 3.2e-06 55.8 89 46.1
CANSAT56G1478 Cannabis sativa HOM05D000422 ORTHO05D001248 4.2e-06 55.5 79 50.6
Cc04_g05910 Coffea canephora HOM05D000422 ORTHO05D001248 4.2e-06 55.5 86 47.7
Glyma.04G200400 Glycine max HOM05D000422 ORTHO05D001248 4.2e-06 55.5 78 51.3
Glyma.06G165200 Glycine max HOM05D000422 ORTHO05D001248 4.2e-06 55.5 78 51.3
HanXRQChr02g0035741 Helianthus annuus HOM05D000422 ORTHO05D001248 4.2e-06 55.5 83 49.4
MD14G1148700 Malus domestica HOM05D000422 ORTHO05D001248 4.2e-06 55.5 79 50.6
Mapoly0113s0004 Marchantia polymorpha HOM05D000422 ORTHO05D001248 4.2e-06 55.5 86 45.3
RcHm_v2.0_Chr7g0188931 Rosa chinensis HOM05D000422 ORTHO05D001248 4.2e-06 55.5 79 50.6
TPR.G21580 Trifolium pratense HOM05D000422 ORTHO05D001248 4.2e-06 55.5 78 51.3
Zm00001eb084890 Zea mays HOM05D000422 ORTHO05D001248 4.2e-06 55.5 89 46.1
arahy.Tifrunner.gnm1.ann1.ZC3RNY Arachis hypogaea HOM05D000422 ORTHO05D001248 5.5e-06 55.1 79 49.4
MSTRG.22854 Avicennia marina HOM05D000422 ORTHO05D001248 5.5e-06 55.1 86 45.3
Ciclev10030863m.g Citrus clementina HOM05D000422 ORTHO05D001248 5.5e-06 55.1 78 51.3
Dinv13735 Davidia involucrata HOM05D000422 ORTHO05D001248 5.5e-06 55.1 84 47.6
Lj9C485G16 Lonicera japonica HOM05D000422 ORTHO05D001248 5.5e-06 55.1 86 48.8
MD06G1132300 Malus domestica HOM05D000422 ORTHO05D001248 5.5e-06 55.1 78 51.3
Prupe.5G143300 Prunus persica HOM05D000422 ORTHO05D001248 5.5e-06 55.1 79 50.6
THA.LOC104825035 Tarenaya hassleriana HOM05D000422 ORTHO05D001248 5.5e-06 55.1 86 48.8
CDE06G0243 Ceratophyllum demersum HOM05D000422 ORTHO05D001248 7.1e-06 54.7 78 48.7
ClCG06G018330 Citrullus lanatus HOM05D000422 ORTHO05D001248 7.1e-06 54.7 78 50.0
MELO3C026162.2 Cucumis melo HOM05D000422 ORTHO05D001248 7.1e-06 54.7 78 50.0
CsaV3_1G000100 Cucumis sativus L. HOM05D000422 ORTHO05D001248 7.1e-06 54.7 78 50.0
ECA247G2359 Erigeron canadensis HOM05D000422 ORTHO05D001248 7.1e-06 54.7 84 48.8
ECA247G2390 Erigeron canadensis HOM05D000422 ORTHO05D001248 7.1e-06 54.7 84 48.8
MBI11_g11870_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D001248 7.1e-06 54.7 78 50.0
Phvul.009G162100 Phaseolus vulgaris HOM05D000422 ORTHO05D001248 7.1e-06 54.7 78 50.0
QL10p000886 Quercus lobata HOM05D000422 ORTHO05D001248 7.1e-06 54.7 79 50.6
Sp5g13180 Schrenkiella parvula HOM05D000422 ORTHO05D001248 7.1e-06 54.7 91 45.1
TWI23G0413 Tripterygium wilfordii HOM05D000422 ORTHO05D001248 7.1e-06 54.7 78 51.3
TWI39G0664 Tripterygium wilfordii HOM05D000422 ORTHO05D001248 7.1e-06 54.7 78 51.3
vmacro19167 Vaccinium macrocarpon HOM05D000422 ORTHO05D001248 7.1e-06 54.7 78 50.0
CBR_g8305 Chara braunii HOM05D000422 ORTHO05D001248 9.3e-06 54.3 86 44.2
Ca_17585_v3 Cicer arietinum L. HOM05D000422 ORTHO05D001248 9.3e-06 54.3 78 50.0
FAN13G2516 Fragaria x ananassa HOM05D000422 ORTHO05D001248 9.3e-06 54.3 79 49.4
SalBow7G0009 Salvia bowleyana HOM05D000422 ORTHO05D001248 9.3e-06 54.3 79 49.4
SGA_v2.0_scaffold40G15621 Striga asiatica HOM05D000422 ORTHO05D001248 9.3e-06 54.3 88 44.3


User provided reference genes

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