Gene: AT5G50920

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G50920
  • Transcript Identifier AT5G50920.1
  • Gene Type Coding gene
  • Location Chr5 : 20715710-20719800 : negative

Gene Family Information

  • ID HOM05D000422
  • #Genes/#Species 1214/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G50920.1
  • symbol CLPC1
  • Alias ATHSP93-V,CLPC,DCA1,DE-REGULATED CAO ACCUMULATION 1,HSP93-V,HEAT SHOCK PROTEIN 93-V
  • uniprot Q9FI56

Descriptions

  • Description CLPC homologue 1
  • Computational description CLPC homologue 1 (CLPC1); FUNCTIONS IN: ATP-dependent peptidase activity, ATPase activity, ATP binding; INVOLVED IN: protein import into chloroplast stroma, regulation of chlorophyll biosynthetic process, protein targeting to chloroplast, chloroplast organization; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA type, core (InterPro:IPR003593), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), UvrB/UvrC protein (InterPro:IPR001943), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Clp ATPase (TAIR:AT3G48870.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006508
IEA
GOA Databaseproteolysis
GO:0015031
IEA
GOA Databaseprotein transport
GO:0009658
IMP
Gene Ontologychloroplast organization1
GO:0045037
IMP
Gene Ontologyprotein import into chloroplast stroma1
GO:0010380
IMP
Gene Ontologyregulation of chlorophyll biosynthetic process2
GO:0045036
IMP
Gene Ontologyprotein targeting to chloroplast3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004176
IDA
Gene OntologyATP-dependent peptidase activity4
GO:0003729
IDA
Gene OntologymRNA binding5
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0016887
IEA
InterProATP hydrolysis activity
GO:0005515
IPI
Gene Ontologyprotein binding6

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009535
IDA
GOA Databasechloroplast thylakoid membrane
GO:0009535
HDA
Gene Ontologychloroplast thylakoid membrane7
GO:0009570
IEA
GOA Databasechloroplast stroma
GO:0009570
IDA, HDA
Gene Ontologychloroplast stroma4 8
GO:0031969
IEA
GOA Databasechloroplast membrane
GO:0005618
IDA
GOA Databasecell wall
GO:0009536
IDA
IEA
GOA Databaseplastid
GO:0009536
HDA
Gene Ontologyplastid9
GO:0009941
IDA
GOA Databasechloroplast envelope
GO:0009941
HDA
Gene Ontologychloroplast envelope10
GO:0005739
IDA
GOA Databasemitochondrion
GO:0005739
HDA
Gene Ontologymitochondrion11
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
IDA, HDA
ISM
Gene Ontologychloroplast1 12
GO:0016020
IEA
GOA Databasemembrane
GO:0009532
IDA
Gene Ontologyplastid stroma13
GO:0031897
TAS
Gene OntologyTic complex1
GO:0009505
HDA
Gene Ontologyplant-type cell wall14
GO:0005829
RCA
Gene Ontologycytosol15
GO:0009706
IDA
Gene Ontologychloroplast inner membrane16

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR001270 ClpA/B family
IPR036628 Clp, N-terminal domain superfamily
IPR004176 Clp, repeat (R) domain
IPR019489 Clp ATPase, C-terminal
IPR003593 AAA+ ATPase domain
IPR041546 ClpA/ClpB, AAA lid domain
IPR003959 ATPase, AAA-type, core
Mapman id Description
19.4.2.9.4 Protein homeostasis.proteolysis.serine-type peptidase activities.chloroplast Clp-type protease complex.chaperone component ClpC