Gene: Sopen12g021150

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen12g021150
  • Transcript Identifier Sopen12g021150.1
  • Gene Type Coding gene
  • Location Spenn-ch12 : 56528026-56532454 : positive

Gene Family Information

  • ID HOM05D000422
  • #Genes/#Species 1214/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen12g021150.1

Descriptions

  • Description ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplast precursor - Pisum sativum (Garden pea), Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery. | CLPC homologue 1 (CLPC1) | FUNCTIONS IN: ATP-dependent peptidase activity, ATPase activity, ATP binding | INVOLVED IN: protein import into chloroplast stroma, regulation of chlorophyll biosynthetic process, protein targeting to chloroplast, chloroplast organization | LOCATED IN: in 8 components | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal , ATPase, AAA-type, core , ATPase, AAA-2 , ATPase, AAA type, core , Chaperonin clpA/B , Chaperonin ClpA/B, conserved site , UvrB/UvrC protein , Clp, N-terminal | BEST Arabidopsis thaliana protein match is: Clp ATPase
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009658
ISO
PLAZA Integrative Orthologychloroplast organization AT5G50920
GO:0045037
ISO
PLAZA Integrative Orthologyprotein import into chloroplast stroma AT5G50920
GO:0045036
ISO
PLAZA Integrative Orthologyprotein targeting to chloroplast AT5G50920
GO:0010380
ISO
PLAZA Integrative Orthologyregulation of chlorophyll biosynthetic process AT5G50920

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G50920
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G48870
GO:0005524
IEA
InterProATP binding
GO:0004176
ISO
PLAZA Integrative OrthologyATP-dependent peptidase activity AT5G50920
GO:0016887
IEA
InterProATP hydrolysis activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009536
ISO
PLAZA Integrative Orthologyplastid AT3G48870
GO:0031897
ISO
PLAZA Integrative OrthologyTic complex AT5G50920
GO:0032991
ISO
PLAZA Integrative Orthologyprotein-containing complex AT3G48870
GO:0005618
ISO
PLAZA Integrative Orthologycell wall AT5G50920
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT3G48870
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT3G48870
GO:0009706
ISO
PLAZA Integrative Orthologychloroplast inner membrane AT5G50920
GO:0009535
ISO
PLAZA Integrative Orthologychloroplast thylakoid membrane AT5G50920
GO:0009532
ISO
PLAZA Integrative Orthologyplastid stroma AT3G48870
GO:0009941
ISO
PLAZA Integrative Orthologychloroplast envelope AT3G48870
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma AT3G48870

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003959 ATPase, AAA-type, core
IPR041546 ClpA/ClpB, AAA lid domain
IPR019489 Clp ATPase, C-terminal
IPR001270 ClpA/B family
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR036628 Clp, N-terminal domain superfamily
IPR003593 AAA+ ATPase domain
IPR004176 Clp, repeat (R) domain
Mapman id Description
19.4.2.9.4 Protein homeostasis.proteolysis.serine-type peptidase activities.chloroplast Clp-type protease complex.chaperone component ClpC