Gene: Carub.0008s1093

General Information

Structural Information

  • Species Capsella rubella
  • Gene Identifier Carub.0008s1093
  • Transcript Identifier Carub.0008s1093.1
  • Gene Type Coding gene
  • Location scaffold_8 : 6670796-6674694 : negative

Gene Family Information

  • ID HOM05D000422
  • #Genes/#Species 1214/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Carub.0008s1093.v1.1
  • pacid 39253121
  • synonym Carubv10025837m.g

Descriptions

  • Description K03696 - ATP-dependent Clp protease ATP-binding subunit ClpC (clpC)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009658
ISO
PLAZA Integrative Orthologychloroplast organization AT5G50920
GO:0045037
ISO
PLAZA Integrative Orthologyprotein import into chloroplast stroma AT5G50920
GO:0045036
ISO
PLAZA Integrative Orthologyprotein targeting to chloroplast AT5G50920
GO:0010380
ISO
PLAZA Integrative Orthologyregulation of chlorophyll biosynthetic process AT5G50920

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G50920
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G50920
GO:0005524
IEA
InterProATP binding
GO:0004176
ISO
PLAZA Integrative OrthologyATP-dependent peptidase activity AT5G50920
GO:0016887
IEA
InterProATP hydrolysis activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031897
ISO
PLAZA Integrative OrthologyTic complex AT5G50920
GO:0005618
ISO
PLAZA Integrative Orthologycell wall AT5G50920
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT5G50920
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT5G50920
GO:0009706
ISO
PLAZA Integrative Orthologychloroplast inner membrane AT5G50920
GO:0009535
ISO
PLAZA Integrative Orthologychloroplast thylakoid membrane AT5G50920
GO:0009536
ISO
PLAZA Integrative Orthologyplastid AT5G50920
GO:0009532
ISO
PLAZA Integrative Orthologyplastid stroma AT5G50920
GO:0009941
ISO
PLAZA Integrative Orthologychloroplast envelope AT5G50920
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma AT5G50920

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR036628 Clp, N-terminal domain superfamily
IPR019489 Clp ATPase, C-terminal
IPR001270 ClpA/B family
IPR004176 Clp, repeat (R) domain
IPR003593 AAA+ ATPase domain
IPR041546 ClpA/ClpB, AAA lid domain
IPR003959 ATPase, AAA-type, core
Mapman id Description
19.4.2.9.4 Protein homeostasis.proteolysis.serine-type peptidase activities.chloroplast Clp-type protease complex.chaperone component ClpC