Gene: Cc04_g05910
General Information
Structural Information
- Species Coffea canephora
- Gene Identifier Cc04_g05910
- Transcript Identifier Cc04_g05910.1
- Gene Type Coding gene
- Location chr4 : 4491863-4496676 : positive
Gene Family Information
- ID HOM05D000422
- #Genes/#Species 1214/100
- Phylogenetic origin
- ID ORTHO05D001248
- #Genes/#Species 448/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- UniProtKB I1JXP9
- UniProtKB P31541
- UniProtKB I1KBY3
- UniProtKB P31542
- UniProtKB P35100
- id GSCOCG00022364001
Descriptions
- Description ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009658 | ISO | PLAZA Integrative Orthology | chloroplast organization | AT5G50920 |
| GO:0045037 | ISO | PLAZA Integrative Orthology | protein import into chloroplast stroma | AT5G50920 |
| GO:0045036 | ISO | PLAZA Integrative Orthology | protein targeting to chloroplast | AT5G50920 |
| GO:0010380 | ISO | PLAZA Integrative Orthology | regulation of chlorophyll biosynthetic process | AT5G50920 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT5G50920 |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G48870 |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0004176 | ISO | PLAZA Integrative Orthology | ATP-dependent peptidase activity | AT5G50920 |
| GO:0016887 | IEA | InterPro | ATP hydrolysis activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009536 | ISO | PLAZA Integrative Orthology | plastid | AT3G48870 |
| GO:0031897 | ISO | PLAZA Integrative Orthology | Tic complex | AT5G50920 |
| GO:0032991 | ISO | PLAZA Integrative Orthology | protein-containing complex | AT3G48870 |
| GO:0005618 | ISO | PLAZA Integrative Orthology | cell wall | AT5G50920 |
| GO:0005739 | ISO | PLAZA Integrative Orthology | mitochondrion | AT3G48870 |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT3G48870 |
| GO:0009706 | ISO | PLAZA Integrative Orthology | chloroplast inner membrane | AT5G50920 |
| GO:0009535 | ISO | PLAZA Integrative Orthology | chloroplast thylakoid membrane | AT5G50920 |
| GO:0009532 | ISO | PLAZA Integrative Orthology | plastid stroma | AT3G48870 |
| GO:0009941 | ISO | PLAZA Integrative Orthology | chloroplast envelope | AT3G48870 |
| GO:0009570 | ISO | PLAZA Integrative Orthology | chloroplast stroma | AT3G48870 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR001270 | ClpA/B family |
| IPR004176 | Clp, repeat (R) domain |
| IPR036628 | Clp, N-terminal domain superfamily |
| IPR041546 | ClpA/ClpB, AAA lid domain |
| IPR019489 | Clp ATPase, C-terminal |
| IPR003959 | ATPase, AAA-type, core |
| IPR003593 | AAA+ ATPase domain |
| Mapman id | Description |
|---|---|
| 19.4.2.9.4 | Protein homeostasis.proteolysis.serine-type peptidase activities.chloroplast Clp-type protease complex.chaperone component ClpC |