Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.C00313 Erythranthe guttata HOM05D024404 ORTHO05D190750 5.9e-56 220.7 118 100.0
Migut.L00003 Erythranthe guttata HOM05D024404 ORTHO05D190065 4.0e-52 208.0 118 96.6
Migut.C00322 Erythranthe guttata HOM05D024404 ORTHO05D190586 6.8e-52 207.2 118 95.8
Migut.C00323 Erythranthe guttata HOM05D024404 ORTHO05D189497 3.6e-45 184.9 130 83.1
Migut.C00314 Erythranthe guttata HOM05D024404 ORTHO05D190053 4.7e-45 184.5 130 82.3
Migut.C00315 Erythranthe guttata HOM05D039034 ORTHO05D189454 9.0e-12 73.9 99 49.5
Sopen03g037240 Solanum pennellii HOM05D000422 ORTHO05D001248 4.2e-09 65.1 110 44.5
PGSC0003DMG400014248 Solanum tuberosum HOM05D000422 ORTHO05D001248 5.5e-09 64.7 110 44.5
Migut.I00611 Erythranthe guttata HOM05D000422 ORTHO05D001248 7.1e-09 64.3 88 50.0
Solyc03g118340.3 Solanum lycopersicum HOM05D000422 ORTHO05D001248 9.3e-09 63.9 110 43.6
CAN.G521.3 Capsicum annuum HOM05D000422 ORTHO05D001248 1.6e-08 63.2 87 48.3
Nitab4.5_0003119g0020 Nicotiana tabacum HOM05D000422 ORTHO05D001248 1.6e-08 63.2 87 48.3
Nitab4.5_0009686g0040 Nicotiana tabacum HOM05D000422 ORTHO05D001248 1.6e-08 63.2 87 48.3
Sc04g0000250 Simmondsia chinensis HOM05D000422 ORTHO05D001248 2.1e-08 62.8 109 45.0
Manes.06G125800 Manihot esculenta HOM05D000422 ORTHO05D001248 2.7e-08 62.4 80 48.8
Manes.14G045700 Manihot esculenta HOM05D000422 ORTHO05D001248 7.9e-08 60.8 80 47.5
Nitab4.5_0000663g0180 Nicotiana tabacum HOM05D000422 ORTHO05D001248 7.9e-08 60.8 87 47.1
Nitab4.5_0002450g0030 Nicotiana tabacum HOM05D000422 ORTHO05D001248 7.9e-08 60.8 87 47.1
Peaxi162Scf00314g00528 Petunia axillaris HOM05D000422 ORTHO05D001248 7.9e-08 60.8 87 47.1
Ah.02g114650 Amaranthus hybridus HOM05D000422 ORTHO05D001248 1.0e-07 60.5 109 43.1
Ah.11g046770 Amaranthus hybridus HOM05D000422 ORTHO05D001248 1.3e-07 60.1 109 43.1
MSTRG.4638 Avicennia marina HOM05D000422 ORTHO05D001248 1.3e-07 60.1 124 40.3
DCAR_025657 Daucus carota HOM05D000422 ORTHO05D001248 1.3e-07 60.1 109 44.0
Hund10055 Selenicereus undatus HOM05D000422 ORTHO05D001248 1.3e-07 60.1 108 43.5
PGSC0003DMG402014476 Solanum tuberosum HOM05D000422 ORTHO05D001248 1.8e-07 59.7 87 47.1
Aqoxy3G01886 Aquilegia oxysepala HOM05D000422 ORTHO05D001248 2.3e-07 59.3 85 47.1
CAN.G843.23 Capsicum annuum HOM05D000422 ORTHO05D001248 2.3e-07 59.3 110 42.7
Oeu013654.1 Olea europaea HOM05D000422 ORTHO05D001248 2.3e-07 59.3 109 44.0
Oeu013655.1 Olea europaea HOM05D000422 ORTHO05D001248 2.3e-07 59.3 109 44.0
Oeu017192.1 Olea europaea HOM05D000422 ORTHO05D001248 2.3e-07 59.3 109 43.1
Oeu061251.2 Olea europaea HOM05D000422 ORTHO05D001248 2.3e-07 59.3 109 44.0
Peaxi162Scf01168g00111 Petunia axillaris HOM05D000422 ORTHO05D001248 2.3e-07 59.3 87 47.1
Psat5g054560 Pisum sativum HOM05D000422 ORTHO05D001248 2.3e-07 59.3 80 48.8
DCAR_016352 Daucus carota HOM05D000422 ORTHO05D001248 3.0e-07 58.9 109 44.0
unitig_62.g23818 Utricularia gibba HOM05D000422 ORTHO05D001248 3.9e-07 58.5 109 43.1
Migut.D01192 Erythranthe guttata HOM05D000422 ORTHO05D001248 5.1e-07 58.2 101 44.6
HanXRQChr05g0154561 Helianthus annuus HOM05D000422 ORTHO05D001248 5.1e-07 58.2 109 43.1
HanXRQChr08g0235061 Helianthus annuus HOM05D000422 ORTHO05D001248 5.1e-07 58.2 109 43.1
Lj1g0019828 Lotus japonicus HOM05D000422 ORTHO05D001248 5.1e-07 58.2 80 47.5
SalBow1G7968 Salvia bowleyana HOM05D000422 ORTHO05D001248 5.1e-07 58.2 109 44.0
A03p16460 Brassica napus HOM05D000422 ORTHO05D001248 6.7e-07 57.8 93 44.1
C03p19350 Brassica napus HOM05D000422 ORTHO05D001248 6.7e-07 57.8 93 44.1
BolC3t14321H Brassica oleracea HOM05D000422 ORTHO05D001248 6.7e-07 57.8 93 44.1
BraA03t10935Z Brassica rapa HOM05D000422 ORTHO05D001248 6.7e-07 57.8 93 44.1
CARHR257340 Cardamine hirsuta HOM05D000422 ORTHO05D001248 6.7e-07 57.8 93 44.1
COL.COLO4_37236 Corchorus olitorius HOM05D000422 ORTHO05D001248 6.7e-07 57.8 79 48.1
Thhalv10012603m.g Eutrema salsugineum HOM05D000422 ORTHO05D001248 6.7e-07 57.8 93 44.1
HanXRQChr09g0273921 Helianthus annuus HOM05D000422 ORTHO05D001248 6.7e-07 57.8 108 42.6
Lsat_1_v5_gn_5_15861 Lactuca sativa HOM05D000422 ORTHO05D001248 6.7e-07 57.8 109 43.1
Lalb_Chr23g0272901 Lupinus albus HOM05D000422 ORTHO05D001248 6.7e-07 57.8 86 46.5
Nn4g22167 Nelumbo nucifera HOM05D000422 ORTHO05D001248 6.7e-07 57.8 80 46.2
Sp6g13090 Schrenkiella parvula HOM05D000422 ORTHO05D001248 6.7e-07 57.8 93 44.1
Aa31LG3G7410 Aethionema arabicum HOM05D000422 ORTHO05D001248 8.7e-07 57.4 90 47.8
MSTRG.9368 Avicennia marina HOM05D000422 ORTHO05D001248 8.7e-07 57.4 109 42.2
MELO3C020666.2 Cucumis melo HOM05D000422 ORTHO05D001248 8.7e-07 57.4 83 45.8
Gohir.A07G047400 Gossypium hirsutum HOM05D000422 ORTHO05D001248 8.7e-07 57.4 80 47.5
Gohir.D07G051600 Gossypium hirsutum HOM05D000422 ORTHO05D001248 8.7e-07 57.4 80 47.5
Gorai.001G054700 Gossypium raimondii HOM05D000422 ORTHO05D001248 8.7e-07 57.4 80 47.5
PGR004G1503 Punica granatum HOM05D000422 ORTHO05D001248 8.7e-07 57.4 80 47.5
PGR044G1784 Punica granatum HOM05D000422 ORTHO05D001248 8.7e-07 57.4 80 47.5
Hund02499 Selenicereus undatus HOM05D000422 ORTHO05D001248 8.7e-07 57.4 110 40.9
Solyc12g042060.3 Solanum lycopersicum HOM05D000422 ORTHO05D001248 8.7e-07 57.4 87 46.0
Sopen12g021150 Solanum pennellii HOM05D000422 ORTHO05D001248 8.7e-07 57.4 87 46.0
PGSC0003DMG400021039 Solanum tuberosum HOM05D000422 ORTHO05D001248 8.7e-07 57.4 96 43.8
Aqoxy7G02623 Aquilegia oxysepala HOM05D000422 ORTHO05D001248 1.1e-06 57.0 85 45.9
CSS0021948 Camellia sinensis var. sinensis HOM05D000422 ORTHO05D001248 1.1e-06 57.0 109 43.1
AUR62009519 Chenopodium quinoa HOM05D000422 ORTHO05D001248 1.1e-06 57.0 98 43.9
AUR62009520 Chenopodium quinoa HOM05D000422 ORTHO05D001248 1.1e-06 57.0 98 43.9
AUR62034768 Chenopodium quinoa HOM05D000422 ORTHO05D001248 1.1e-06 57.0 98 43.9
CsaV3_1G033930 Cucumis sativus L. HOM05D000422 ORTHO05D001248 1.1e-06 57.0 83 45.8
Duzib205G0028 Durio zibethinus HOM05D000422 ORTHO05D001248 1.1e-06 57.0 80 47.5
Gohir.A03G056700 Gossypium hirsutum HOM05D000422 ORTHO05D001248 1.1e-06 57.0 80 47.5
HanXRQChr16g0498881 Helianthus annuus HOM05D000422 ORTHO05D001248 1.1e-06 57.0 109 42.2
Sc22g0003500 Simmondsia chinensis HOM05D000422 ORTHO05D001248 1.1e-06 57.0 98 43.9
Atru.chr6.1902 Acer truncatum HOM05D000422 ORTHO05D001248 1.5e-06 56.6 80 47.5
CSS0009915 Camellia sinensis var. sinensis HOM05D000422 ORTHO05D001248 1.5e-06 56.6 109 43.1
CSS0044818 Camellia sinensis var. sinensis HOM05D000422 ORTHO05D001248 1.5e-06 56.6 109 43.1
CiPaw.11G001300 Carya illinoinensis HOM05D000422 ORTHO05D001248 1.5e-06 56.6 79 46.8
Lalb_Chr11g0069261 Lupinus albus HOM05D000422 ORTHO05D001248 1.5e-06 56.6 85 45.9
Medtr3g498725 Medicago truncatula HOM05D000422 ORTHO05D001248 1.5e-06 56.6 80 46.2
Potri.015G105100 Populus trichocarpa HOM05D000422 ORTHO05D001248 1.5e-06 56.6 79 45.6
THA.LOC104811561 Tarenaya hassleriana HOM05D000422 ORTHO05D001248 1.5e-06 56.6 123 41.5
unitig_52.g17037 Utricularia gibba HOM05D000422 ORTHO05D001248 1.5e-06 56.6 87 46.0
MSTRG.22854 Avicennia marina HOM05D000422 ORTHO05D001248 1.9e-06 56.2 109 40.4
A01p25180 Brassica napus HOM05D000422 ORTHO05D001248 1.9e-06 56.2 91 45.1
BraA01t02426Z Brassica rapa HOM05D000422 ORTHO05D001248 1.9e-06 56.2 91 45.1
Eucgr.K02198 Eucalyptus grandis HOM05D000422 ORTHO05D001248 1.9e-06 56.2 80 47.5
Lj4g0023906 Lotus japonicus HOM05D000422 ORTHO05D001248 1.9e-06 56.2 79 45.6
Potri.012G105900 Populus trichocarpa HOM05D000422 ORTHO05D001248 1.9e-06 56.2 79 45.6
Sabra12G0078200 Salix brachista HOM05D000422 ORTHO05D001248 1.9e-06 56.2 83 44.6
ATR0582G302 Amborella trichopoda HOM05D000422 ORTHO05D001248 2.5e-06 55.8 80 45.0
arahy.Tifrunner.gnm1.ann1.40Y6RI Arachis hypogaea HOM05D000422 ORTHO05D001248 2.5e-06 55.8 88 46.6
arahy.Tifrunner.gnm1.ann1.PT1JHX Arachis hypogaea HOM05D000422 ORTHO05D001248 2.5e-06 55.8 88 46.6
C01p31380 Brassica napus HOM05D000422 ORTHO05D001248 2.5e-06 55.8 90 44.4
Gohir.D03G109800 Gossypium hirsutum HOM05D000422 ORTHO05D001248 2.5e-06 55.8 80 46.2
Gorai.003G116200 Gossypium raimondii HOM05D000422 ORTHO05D001248 2.5e-06 55.8 80 46.2
TAR629G2448 Trochodendron aralioides HOM05D000422 ORTHO05D001248 2.5e-06 55.8 79 48.1
EL10Ac5g11304 Beta vulgaris HOM05D000422 ORTHO05D001248 3.3e-06 55.5 98 42.9
Ca_10884_v3 Cicer arietinum L. HOM05D000422 ORTHO05D001248 3.3e-06 55.5 84 46.4
MBI07_g07341_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D001248 3.3e-06 55.5 80 45.0
Sed0016051 Sechium edule HOM05D000422 ORTHO05D001248 3.3e-06 55.5 83 45.8
Thecc.03G138700 Theobroma cacao HOM05D000422 ORTHO05D001248 3.3e-06 55.5 79 46.8
CiPaw.12G001600 Carya illinoinensis HOM05D000422 ORTHO05D001248 4.3e-06 55.1 79 46.8
FvH4_5g09290 Fragaria vesca HOM05D000422 ORTHO05D001248 4.3e-06 55.1 80 46.2
FAN04G3089 Fragaria x ananassa HOM05D000422 ORTHO05D001248 4.3e-06 55.1 80 46.2
FAN08G0605 Fragaria x ananassa HOM05D000422 ORTHO05D001248 4.3e-06 55.1 80 46.2
FAN18G4242 Fragaria x ananassa HOM05D000422 ORTHO05D001248 4.3e-06 55.1 80 46.2
Medtr3g102830 Medicago truncatula HOM05D000422 ORTHO05D001248 4.3e-06 55.1 79 46.8
AL8G25110 Arabidopsis lyrata HOM05D000422 ORTHO05D001248 5.6e-06 54.7 93 41.9
AT5G50920 Arabidopsis thaliana HOM05D000422 ORTHO05D001248 5.6e-06 54.7 93 41.9
CANSAT56G1478 Cannabis sativa HOM05D000422 ORTHO05D001248 5.6e-06 54.7 80 46.2
Cc04_g05910 Coffea canephora HOM05D000422 ORTHO05D001248 5.6e-06 54.7 109 41.3
Duzib068G0301 Durio zibethinus HOM05D000422 ORTHO05D001248 5.6e-06 54.7 87 44.8
Glyma.04G200400 Glycine max HOM05D000422 ORTHO05D001248 5.6e-06 54.7 79 46.8
Glyma.06G165200 Glycine max HOM05D000422 ORTHO05D001248 5.6e-06 54.7 79 46.8
MD14G1148700 Malus domestica HOM05D000422 ORTHO05D001248 5.6e-06 54.7 80 46.2
Os12g0230100 Oryza sativa ssp. japonica HOM05D000422 ORTHO05D001248 5.6e-06 54.7 79 40.5
Phvul.009G162100 Phaseolus vulgaris HOM05D000422 ORTHO05D001248 5.6e-06 54.7 85 44.7
RcHm_v2.0_Chr7g0188931 Rosa chinensis HOM05D000422 ORTHO05D001248 5.6e-06 54.7 80 46.2
Sabra15G0125300 Salix brachista HOM05D000422 ORTHO05D001248 5.6e-06 54.7 85 44.7
THA.LOC104821539 Tarenaya hassleriana HOM05D000422 ORTHO05D001248 5.6e-06 54.7 91 44.0
TPR.G21580 Trifolium pratense HOM05D000422 ORTHO05D001248 5.6e-06 54.7 79 46.8
arahy.Tifrunner.gnm1.ann1.ZC3RNY Arachis hypogaea HOM05D000422 ORTHO05D001248 7.4e-06 54.3 80 45.0
BcaB05g22981 Brassica carinata HOM05D000422 ORTHO05D001248 7.4e-06 54.3 89 43.8
BcaC09g49911 Brassica carinata HOM05D000422 ORTHO05D001248 7.4e-06 54.3 90 44.4
BolC1t03075H Brassica oleracea HOM05D000422 ORTHO05D001248 7.4e-06 54.3 90 44.4
Carub.0008s1093 Capsella rubella HOM05D000422 ORTHO05D001248 7.4e-06 54.3 93 41.9
Ciclev10030863m.g Citrus clementina HOM05D000422 ORTHO05D001248 7.4e-06 54.3 79 46.8
ECA232G2662 Erigeron canadensis HOM05D000422 ORTHO05D001248 7.4e-06 54.3 109 42.2
HanXRQChr02g0035741 Helianthus annuus HOM05D000422 ORTHO05D001248 7.4e-06 54.3 90 44.4
Hma1.2p1_1070F.1_g254130 Hydrangea macrophylla HOM05D000422 ORTHO05D001248 7.4e-06 54.3 87 44.8
Hma1.2p1_1171F.1_g263510 Hydrangea macrophylla HOM05D000422 ORTHO05D001248 7.4e-06 54.3 87 44.8
Prupe.5G143300 Prunus persica HOM05D000422 ORTHO05D001248 7.4e-06 54.3 80 46.2
SalBow7G0009 Salvia bowleyana HOM05D000422 ORTHO05D001248 7.4e-06 54.3 85 44.7
Sed0011803 Sechium edule HOM05D000422 ORTHO05D001248 7.4e-06 54.3 90 43.3
SGA_v2.0_scaffold40G15621 Striga asiatica HOM05D000422 ORTHO05D001248 7.4e-06 54.3 112 39.3
BcaB01g00774 Brassica carinata HOM05D000422 ORTHO05D001248 9.6e-06 53.9 92 42.4
A06p18880 Brassica napus HOM05D000422 ORTHO05D001248 9.6e-06 53.9 92 42.4
C08p23840 Brassica napus HOM05D000422 ORTHO05D001248 9.6e-06 53.9 92 42.4
BraA06t24971Z Brassica rapa HOM05D000422 ORTHO05D001248 9.6e-06 53.9 92 42.4
ClCG06G018330 Citrullus lanatus HOM05D000422 ORTHO05D001248 9.6e-06 53.9 79 45.6
MELO3C026162.2 Cucumis melo HOM05D000422 ORTHO05D001248 9.6e-06 53.9 79 45.6
CsaV3_1G000100 Cucumis sativus L. HOM05D000422 ORTHO05D001248 9.6e-06 53.9 79 45.6
Dinv13735 Davidia involucrata HOM05D000422 ORTHO05D001248 9.6e-06 53.9 101 43.6
QL10p000886 Quercus lobata HOM05D000422 ORTHO05D001248 9.6e-06 53.9 80 46.2
THA.LOC104798922 Tarenaya hassleriana HOM05D000422 ORTHO05D001248 9.6e-06 53.9 90 44.4
TWI23G0413 Tripterygium wilfordii HOM05D000422 ORTHO05D001248 9.6e-06 53.9 79 46.8
TWI39G0664 Tripterygium wilfordii HOM05D000422 ORTHO05D001248 9.6e-06 53.9 79 46.8
TAR622G0976 Trochodendron aralioides HOM05D000422 ORTHO05D001248 9.6e-06 53.9 99 42.4


User provided reference genes

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