Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.A00849 Erythranthe guttata HOM05D007086 ORTHO05D008927 5.1e-34 147.1 72 100.0
Migut.I00707 Erythranthe guttata HOM05D007086 ORTHO05D008927 5.1e-34 147.1 72 100.0
SalBow6G6939 Salvia bowleyana HOM05D007086 ORTHO05D008927 6.5e-29 130.2 68 89.7
PGSC0003DMG400003953 Solanum tuberosum HOM05D007086 ORTHO05D008927 1.1e-28 129.4 69 88.4
Solyc08g079610.3 Solanum lycopersicum HOM05D007086 ORTHO05D008927 4.2e-28 127.5 69 87.0
Sopen08g027960 Solanum pennellii HOM05D007086 ORTHO05D008927 4.2e-28 127.5 69 87.0
PGSC0003DMG400019087 Solanum tuberosum HOM05D007086 ORTHO05D008927 4.2e-28 127.5 69 87.0
SGA_v2.0_scaffold37G14847 Striga asiatica HOM05D007086 ORTHO05D008927 4.2e-28 127.5 68 85.3
Peaxi162Scf00051g00316 Petunia axillaris HOM05D007086 ORTHO05D008927 2.1e-27 125.2 69 84.1
Peaxi162Scf00078g00627 Petunia axillaris HOM05D007086 ORTHO05D008927 2.1e-27 125.2 69 84.1
Cc08_g13390 Coffea canephora HOM05D007086 ORTHO05D008927 3.0e-26 121.3 69 82.6
SGA_v2.0_scaffold511G52628 Striga asiatica HOM05D007086 ORTHO05D008927 3.3e-25 117.9 69 79.7
CAN.G630.56 Capsicum annuum HOM05D007086 ORTHO05D008927 4.0e-23 110.9 63 84.1
Duzib084G0284 Durio zibethinus HOM05D007086 ORTHO05D008927 6.9e-23 110.2 69 72.5
HanXRQChr02g0046221 Helianthus annuus HOM05D007086 ORTHO05D008927 1.2e-22 109.4 66 77.3
Eucgr.E00483 Eucalyptus grandis HOM05D007086 ORTHO05D008927 1.5e-22 109.0 69 73.9
Sabra01G0089100 Salix brachista HOM05D007086 ORTHO05D008927 2.0e-22 108.6 69 73.9
Sc01g0009150 Simmondsia chinensis HOM05D007086 ORTHO05D008927 2.0e-22 108.6 67 76.1
CiPaw.11G146300 Carya illinoinensis HOM05D007086 ORTHO05D008927 5.8e-22 107.1 72 69.4
Nitab4.5_0005241g0010 Nicotiana tabacum HOM05D007086 ORTHO05D008927 5.8e-22 107.1 63 77.8
Potri.001G116000 Populus trichocarpa HOM05D007086 ORTHO05D008927 5.8e-22 107.1 69 71.0
GSVIVG01019940001 Vitis vinifera HOM05D007086 ORTHO05D008927 5.8e-22 107.1 69 72.5
Aa31LG1G2230 Aethionema arabicum HOM05D007086 ORTHO05D008927 7.6e-22 106.7 69 69.6
Gohir.A12G221900 Gossypium hirsutum HOM05D007086 ORTHO05D008927 1.3e-21 105.9 69 66.7
Gohir.D12G224400 Gossypium hirsutum HOM05D007086 ORTHO05D008927 1.3e-21 105.9 69 66.7
Gorai.008G240500 Gossypium raimondii HOM05D007086 ORTHO05D008927 1.3e-21 105.9 69 66.7
Manes.02G032611 Manihot esculenta HOM05D007086 ORTHO05D008927 1.3e-21 105.9 69 71.0
Nitab4.5_0000633g0050 Nicotiana tabacum HOM05D007086 ORTHO05D008927 1.7e-21 105.5 59 84.7
Nitab4.5_0007130g0020 Nicotiana tabacum HOM05D007086 ORTHO05D008927 1.7e-21 105.5 59 84.7
Atru.chr9.1458 Acer truncatum HOM05D007086 ORTHO05D008927 2.2e-21 105.1 69 72.5
CSS0011774 Camellia sinensis var. sinensis HOM05D007086 ORTHO05D008927 2.9e-21 104.8 69 72.5
CSS0048716 Camellia sinensis var. sinensis HOM05D007086 ORTHO05D008927 2.9e-21 104.8 69 72.5
CANSAT21G1174 Cannabis sativa HOM05D007086 ORTHO05D008927 3.8e-21 104.4 69 69.6
AL1G23730 Arabidopsis lyrata HOM05D007086 ORTHO05D008927 5.0e-21 104.0 68 67.6
AT1G12400 Arabidopsis thaliana HOM05D007086 ORTHO05D008927 6.5e-21 103.6 68 66.2
BolC5t29822H Brassica oleracea HOM05D007086 ORTHO05D008927 6.5e-21 103.6 69 66.7
BraA06t24109Z Brassica rapa HOM05D007086 ORTHO05D008927 6.5e-21 103.6 69 66.7
Cpa.g.sc29.74 Carica papaya HOM05D007086 ORTHO05D008927 6.5e-21 103.6 69 69.6
Cfa012029 Carpinus fangiana HOM05D007086 ORTHO05D008927 6.5e-21 103.6 69 69.6
PGR031G3010 Punica granatum HOM05D007086 ORTHO05D008927 6.5e-21 103.6 69 68.1
FAN08G0246 Fragaria x ananassa HOM05D007086 ORTHO05D008927 8.4e-21 103.2 69 71.0
Sp1g11000 Schrenkiella parvula HOM05D007086 ORTHO05D008927 1.1e-20 102.8 69 66.7
Thecc.03G263200 Theobroma cacao HOM05D007086 ORTHO05D008927 1.1e-20 102.8 69 66.7
Actinidia05249 Actinidia chinensis HOM05D001611 ORTHO05D001464 1.4e-20 102.4 69 73.9
CARHR012690 Cardamine hirsuta HOM05D007086 ORTHO05D008927 1.4e-20 102.4 68 64.7
Thhalv10009271m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 1.9e-20 102.1 69 65.2
QL12p015352 Quercus lobata HOM05D007086 ORTHO05D008927 1.9e-20 102.1 68 70.6
TWI60G0887 Tripterygium wilfordii HOM05D007086 ORTHO05D008927 1.9e-20 102.1 69 66.7
Sed0003691 Sechium edule HOM05D007086 ORTHO05D008927 2.5e-20 101.7 69 63.8
THA.LOC104809439 Tarenaya hassleriana HOM05D007086 ORTHO05D008927 2.5e-20 101.7 69 65.2
Carub.0001s1205 Capsella rubella HOM05D007086 ORTHO05D008927 3.2e-20 101.3 68 63.2
Glyma.05G239900 Glycine max HOM05D007086 ORTHO05D008927 3.2e-20 101.3 69 68.1
Glyma.08G047000 Glycine max HOM05D007086 ORTHO05D008927 3.2e-20 101.3 69 68.1
RcHm_v2.0_Chr7g0201071 Rosa chinensis HOM05D007086 ORTHO05D008927 3.2e-20 101.3 69 69.6
MD04G1245800 Malus domestica HOM05D007086 ORTHO05D008927 4.2e-20 100.9 69 69.6
MD12G1192500 Malus domestica HOM05D007086 ORTHO05D008927 4.2e-20 100.9 69 69.6
EL10Ac7g17105 Beta vulgaris HOM05D007086 ORTHO05D008927 7.1e-20 100.1 67 68.7
Hma1.2p1_0367F.1_g137100 Hydrangea macrophylla HOM05D007086 ORTHO05D008927 7.1e-20 100.1 69 66.7
Hma1.2p1_3825F.1_g337656 Hydrangea macrophylla HOM05D007086 ORTHO05D008927 7.1e-20 100.1 69 66.7
Medtr5g055890 Medicago truncatula HOM05D007086 ORTHO05D008927 7.1e-20 100.1 69 66.7
CDE11G0364 Ceratophyllum demersum HOM05D007086 ORTHO05D008927 1.2e-19 99.4 67 65.7
CsaV3_3G003270 Cucumis sativus L. HOM05D007086 ORTHO05D008927 1.2e-19 99.4 69 63.8
Lj4g0021147 Lotus japonicus HOM05D007086 ORTHO05D008927 1.2e-19 99.4 69 65.2
Lalb_Chr05g0222151 Lupinus albus HOM05D007086 ORTHO05D008927 1.2e-19 99.4 69 66.7
Nn1g01223 Nelumbo nucifera HOM05D007086 ORTHO05D008927 1.2e-19 99.4 69 65.2
BcaB03g13189 Brassica carinata HOM05D007086 ORTHO05D008927 2.1e-19 98.6 69 63.8
ClCG00G001010 Citrullus lanatus HOM05D007086 ORTHO05D008927 2.1e-19 98.6 69 62.3
Phvul.009G128900 Phaseolus vulgaris HOM05D007086 ORTHO05D008927 2.1e-19 98.6 69 66.7
Lsat_1_v5_gn_6_9641 Lactuca sativa HOM05D007086 ORTHO05D008927 2.7e-19 98.2 68 72.1
PSO478G4385 Papaver somniferum HOM05D007086 ORTHO05D008927 2.7e-19 98.2 69 65.2
Phvul.002G322200 Phaseolus vulgaris HOM05D007086 ORTHO05D008927 2.7e-19 98.2 69 65.2
Prupe.5G081100 Prunus persica HOM05D007086 ORTHO05D008927 2.7e-19 98.2 69 65.2
Os07g0573600 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 4.6e-19 97.4 69 59.4
BolC8t49170H Brassica oleracea HOM05D007086 ORTHO05D008927 6.1e-19 97.1 69 65.2
Potri.009G138800 Populus trichocarpa HOM05D007086 ORTHO05D008927 6.1e-19 97.1 67 65.7
Os05g0198700 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 1.3e-18 95.9 69 58.0
Rhsim07G0100800 Rhododendron simsii HOM05D007086 ORTHO05D008927 1.3e-18 95.9 69 66.7
TPR.G38364 Trifolium pratense HOM05D007086 ORTHO05D008927 1.3e-18 95.9 69 63.8
Ciclev10024015m.g Citrus clementina HOM05D007086 ORTHO05D008927 1.8e-18 95.5 59 74.6
PSO782G0332 Papaver somniferum HOM05D007086 ORTHO05D008927 5.1e-18 94.0 69 62.3
Aqoxy7G00621 Aquilegia oxysepala HOM05D007086 ORTHO05D008927 1.1e-17 92.8 63 71.4
Medtr5g055880 Medicago truncatula HOM05D007086 ORTHO05D008927 2.5e-17 91.7 64 65.6
Lj4g0007995 Lotus japonicus HOM05D007086 ORTHO05D008927 5.7e-17 90.5 76 57.9
FAN18G4230 Fragaria x ananassa HOM05D001611 ORTHO05D001464 2.2e-16 88.6 59 72.9
Dinv00491 Davidia involucrata HOM05D007086 ORTHO05D008927 2.8e-16 88.2 67 64.2
Mapoly0088s0021 Marchantia polymorpha HOM05D007086 ORTHO05D008927 3.7e-16 87.8 65 58.5
Pp3c1_34050 Physcomitrium patens HOM05D007086 ORTHO05D008927 6.3e-16 87.0 67 49.3
C08p15410 Brassica napus HOM05D001611 ORTHO05D001464 8.2e-16 86.7 64 65.6
AagrBONN_evm.TU.Sc2ySwM_362.2353 Anthoceros agrestis HOM05D002603 ORTHO05D008927 1.1e-15 86.3 64 56.2
MBI12_g10752_MAGBIO Magnolia biondii HOM05D007086 ORTHO05D008927 1.8e-15 85.5 69 59.4
Rhsim02G0194900 Rhododendron simsii HOM05D007086 ORTHO05D008927 1.8e-15 85.5 57 68.4
BraA08t35207Z Brassica rapa HOM05D001611 ORTHO05D001464 3.1e-15 84.7 64 62.5
CBR_g51826 Chara braunii HOM05D007086 ORTHO05D008927 4.1e-15 84.3 70 51.4
FAN12G2970 Fragaria x ananassa HOM05D007086 ORTHO05D008927 4.1e-15 84.3 69 59.4
FAN12G3233 Fragaria x ananassa HOM05D007086 ORTHO05D008927 4.1e-15 84.3 69 59.4
Rhsim02G0196200 Rhododendron simsii HOM05D007086 ORTHO05D008927 4.1e-15 84.3 66 59.1
SEGI_31798 Sequoiadendron giganteum HOM05D007086 ORTHO05D008927 5.3e-15 84.0 69 55.1
arahy.Tifrunner.gnm1.ann1.T092PF Arachis hypogaea HOM05D007086 ORTHO05D008927 6.9e-15 83.6 58 65.5
ClCG00G001020 Citrullus lanatus HOM05D000693 ORTHO05D001102 9.0e-15 83.2 69 53.6
Prupe.5G081200 Prunus persica HOM05D007086 ORTHO05D008927 1.2e-14 82.8 59 66.1
arahy.Tifrunner.gnm1.ann1.NIEM70 Arachis hypogaea HOM05D007086 ORTHO05D008927 1.5e-14 82.4 67 59.7
MELO3C013994.2 Cucumis melo HOM05D000693 ORTHO05D001102 2.6e-14 81.6 59 61.0
TWI77G0094 Tripterygium wilfordii HOM05D007086 ORTHO05D008927 3.4e-14 81.3 56 66.1
Carub.0002s0211 Capsella rubella HOM05D007086 ORTHO05D008927 2.2e-13 78.6 67 56.7
MD06G1064000 Malus domestica HOM05D007086 ORTHO05D008927 2.2e-13 78.6 62 67.7
AL2G12840 Arabidopsis lyrata HOM05D007086 ORTHO05D008927 6.5e-13 77.0 71 53.5
Zm00001eb267070 Zea mays HOM05D007086 ORTHO05D008927 6.5e-13 77.0 59 54.2
AT1G62886 Arabidopsis thaliana HOM05D007086 ORTHO05D008927 1.1e-12 76.3 71 52.1
A08p32850 Brassica napus HOM05D001611 ORTHO05D001464 4.2e-12 74.3 67 56.7
Thhalv10029420m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 9.4e-12 73.2 71 49.3
CARHR048860 Cardamine hirsuta HOM05D007086 ORTHO05D008927 1.0e-10 69.7 72 47.2
Lalb_Chr18g0049811 Lupinus albus HOM05D007086 ORTHO05D008927 8.8e-10 66.6 56 58.9
Os05g0108500 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 8.8e-10 66.6 61 52.5
Dinv08998 Davidia involucrata HOM05D007086 ORTHO05D008927 2.2e-08 62.0 47 66.0
HPP92_014763 Vanilla planifolia HOM05D007086 ORTHO05D008927 1.2e-06 56.2 40 57.5
Thhalv10023898m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 4.5e-06 54.3 81 37.0


User provided reference genes

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