Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g028105 Medicago truncatula HOM05D006570 ORTHO05D008193 1.1e-259 899.4 457 100.0
TPR.G5123 Trifolium pratense HOM05D006570 ORTHO05D008193 1.1e-225 786.6 462 86.8
Ca_23570_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 2.1e-221 772.3 464 86.0
Ca_23579_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 2.1e-221 772.3 464 86.0
Lj3g0023743 Lotus japonicus HOM05D006570 ORTHO05D008193 1.7e-204 716.1 456 79.4
Glyma.07G059700 Glycine max HOM05D006570 ORTHO05D008193 4.6e-197 691.4 442 80.8
Psat4g158840 Pisum sativum HOM05D006570 ORTHO05D008193 3.3e-195 685.3 388 89.4
Phvul.010G109900 Phaseolus vulgaris HOM05D006570 ORTHO05D008193 9.3e-190 667.2 466 75.5
VMungo0331G0798 Vigna mungo HOM05D006570 ORTHO05D008193 2.8e-186 655.6 468 73.7
Lalb_Chr10g0100201 Lupinus albus HOM05D006570 ORTHO05D008193 6.5e-183 644.4 428 75.2
arahy.Tifrunner.gnm1.ann1.L2UBUE Arachis hypogaea HOM05D006570 ORTHO05D008193 1.8e-180 636.3 478 70.1
arahy.Tifrunner.gnm1.ann1.N5JW36 Arachis hypogaea HOM05D006570 ORTHO05D008193 1.1e-179 633.6 475 70.1
Atru.chr6.3468 Acer truncatum HOM05D006570 ORTHO05D008193 6.5e-167 591.3 435 67.1
Haze_04512 Corylus avellana HOM05D006570 ORTHO05D008193 1.1e-166 590.5 430 69.1
Cfa006298 Carpinus fangiana HOM05D006570 ORTHO05D008193 5.5e-166 588.2 431 68.4
Ciclev10015195m.g Citrus clementina HOM05D006570 ORTHO05D008193 5.7e-163 578.2 454 63.7
CiPaw.07G077200 Carya illinoinensis HOM05D006570 ORTHO05D008193 4.1e-161 572.0 450 64.9
Dinv28772 Davidia involucrata HOM05D006570 ORTHO05D008193 1.2e-157 560.5 437 66.1
Duzib133G0843 Durio zibethinus HOM05D006570 ORTHO05D008193 6.7e-156 554.7 460 62.2
FvH4_3g28500 Fragaria vesca HOM05D006570 ORTHO05D008193 6.7e-156 554.7 464 62.7
CANSAT01G0840 Cannabis sativa HOM05D006570 ORTHO05D008193 1.1e-155 553.9 436 63.1
RcHm_v2.0_Chr5g0052821 Rosa chinensis HOM05D006570 ORTHO05D008193 2.6e-155 552.7 458 63.1
Potri.014G198000 Populus trichocarpa HOM05D006570 ORTHO05D008193 5.7e-155 551.6 470 61.1
Manes.13G058200 Manihot esculenta HOM05D006570 ORTHO05D008193 1.7e-154 550.1 429 63.9
TWI18G1431 Tripterygium wilfordii HOM05D006570 ORTHO05D008193 1.1e-153 547.4 465 61.7
Gohir.D07G093500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 1.4e-153 547.0 442 63.3
Gorai.001G100200 Gossypium raimondii HOM05D006570 ORTHO05D008193 1.4e-153 547.0 442 63.3
Prupe.6G214800 Prunus persica HOM05D006570 ORTHO05D008193 1.8e-153 546.6 413 65.9
TAR362G0032 Trochodendron aralioides HOM05D006570 ORTHO05D008193 2.4e-153 546.2 436 63.1
Thecc.01G203700 Theobroma cacao HOM05D006570 ORTHO05D008193 1.2e-152 543.9 464 61.2
Actinidia11648 Actinidia chinensis HOM05D006570 ORTHO05D008193 4.5e-152 542.0 429 65.0
Hma1.2p1_0834F.1_g225720 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 5.9e-152 541.6 403 68.0
FAN21G3910 Fragaria x ananassa HOM05D006570 ORTHO05D008193 7.7e-152 541.2 463 62.0
Cpa.g.sc8.9 Carica papaya HOM05D006570 ORTHO05D008193 2.2e-151 539.7 465 60.6
Lj2A1109T67 Lonicera japonica HOM05D006570 ORTHO05D008193 3.8e-151 538.9 462 62.3
Gohir.A07G088500 Gossypium hirsutum HOM05D006570 ORTHO05D008193 7.2e-150 534.6 441 62.8
vmacro02851 Vaccinium macrocarpon HOM05D006570 ORTHO05D008193 2.1e-149 533.1 443 64.6
Oeu020442.2 Olea europaea HOM05D006570 ORTHO05D008193 6.1e-149 531.6 460 61.1
Sabra14G0132400 Salix brachista HOM05D006570 ORTHO05D008193 8.0e-149 531.2 553 53.7
MD15G1141300 Malus domestica HOM05D006570 ORTHO05D008193 2.0e-147 526.6 405 65.7
Aa31sc565G50 Aethionema arabicum HOM05D006570 ORTHO05D008193 5.7e-147 525.0 457 60.0
Carub.0007s3008 Capsella rubella HOM05D006570 ORTHO05D008193 5.7e-147 525.0 407 64.9
AL9U11910 Arabidopsis lyrata HOM05D006570 ORTHO05D008193 7.5e-147 524.6 407 64.1
COL.COLO4_19720 Corchorus olitorius HOM05D006570 ORTHO05D008193 1.3e-146 523.9 420 63.8
Migut.D00755 Erythranthe guttata HOM05D006570 ORTHO05D008193 1.6e-144 516.9 449 60.6
SalBow2G2795 Salvia bowleyana HOM05D006570 ORTHO05D008193 2.0e-144 516.5 449 59.7
CsaV3_6G007600 Cucumis sativus L. HOM05D006570 ORTHO05D008193 3.5e-144 515.8 469 58.2
SalBow6G3933 Salvia bowleyana HOM05D006570 ORTHO05D008193 3.5e-144 515.8 449 59.5
Aqoxy7G03970 Aquilegia oxysepala HOM05D006570 ORTHO05D008193 4.5e-144 515.4 476 57.1
C04p43140 Brassica napus HOM05D006570 ORTHO05D008193 4.5e-144 515.4 423 61.5
BcaC02g09469 Brassica carinata HOM05D006570 ORTHO05D008193 7.7e-144 514.6 423 61.5
Sp7g09050 Schrenkiella parvula HOM05D006570 ORTHO05D008193 1.0e-143 514.2 405 62.7
Ah.11g050650 Amaranthus hybridus HOM05D006570 ORTHO05D008193 1.7e-143 513.5 430 61.2
AT4G12740 Arabidopsis thaliana HOM05D006570 ORTHO05D008193 3.8e-143 512.3 428 61.0
PSO170G2695 Papaver somniferum HOM05D006570 ORTHO05D008193 5.0e-143 511.9 457 58.4
MBI10_g46813_MAGBIO Magnolia biondii HOM05D006570 ORTHO05D008193 6.5e-143 511.5 452 60.2
Thhalv10024575m.g Eutrema salsugineum HOM05D006570 ORTHO05D008193 8.5e-143 511.1 394 64.7
Solyc09g018850.3 Solanum lycopersicum HOM05D006570 ORTHO05D008193 8.5e-143 511.1 452 58.6
Aqoxy1G01428 Aquilegia oxysepala HOM05D006570 ORTHO05D008193 1.1e-142 510.8 476 56.9
Sopen09g012610 Solanum pennellii HOM05D006570 ORTHO05D008193 1.1e-142 510.8 452 58.6
Cc01_g15710 Coffea canephora HOM05D006570 ORTHO05D008193 1.5e-142 510.4 453 58.3
BcaB03g16147 Brassica carinata HOM05D006570 ORTHO05D008193 1.9e-142 510.0 453 59.2
ECA236G3480 Erigeron canadensis HOM05D006570 ORTHO05D008193 3.2e-142 509.2 440 59.8
PGSC0003DMG400020287 Solanum tuberosum HOM05D006570 ORTHO05D008193 3.2e-142 509.2 452 58.6
A04p09180 Brassica napus HOM05D006570 ORTHO05D008193 1.2e-141 507.3 453 58.9
THA.LOC104815379 Tarenaya hassleriana HOM05D006570 ORTHO05D008193 3.6e-141 505.8 414 61.8
GSVIVG01004124001 Vitis vinifera HOM05D006570 ORTHO05D008193 8.0e-141 504.6 464 57.8
Peaxi162Scf12724g00014 Petunia axillaris HOM05D006570 ORTHO05D008193 1.4e-140 503.8 462 58.0
CARHR218120 Cardamine hirsuta HOM05D006570 ORTHO05D008193 3.0e-140 502.7 431 59.9
ClCG06G001630 Citrullus lanatus HOM05D006570 ORTHO05D008193 2.0e-139 500.0 437 59.7
PGR083G1749 Punica granatum HOM05D006570 ORTHO05D008193 2.6e-139 499.6 445 60.7
EL10Ac5g10565 Beta vulgaris HOM05D006570 ORTHO05D008193 3.4e-139 499.2 427 60.4
Sc05g0001500 Simmondsia chinensis HOM05D006570 ORTHO05D008193 4.8e-138 495.4 402 60.9
Nitab4.5_0005967g0010 Nicotiana tabacum HOM05D006570 ORTHO05D008193 6.3e-138 495.0 440 58.0
BolC4t25891H Brassica oleracea HOM05D006570 ORTHO05D008193 1.1e-137 494.2 414 60.6
ATR0743G076 Amborella trichopoda HOM05D006570 ORTHO05D008193 1.7e-135 486.9 415 59.5
CDE09G0147 Ceratophyllum demersum HOM05D006570 ORTHO05D008193 8.6e-135 484.6 433 59.4
BraA04t16613Z Brassica rapa HOM05D006570 ORTHO05D008193 1.5e-134 483.8 451 57.0
HanXRQChr16g0508391 Helianthus annuus HOM05D006570 ORTHO05D008193 1.9e-134 483.4 442 57.5
Nitab4.5_0009028g0030 Nicotiana tabacum HOM05D006570 ORTHO05D008193 7.2e-134 481.5 469 56.1
DCAR_012712 Daucus carota HOM05D006570 ORTHO05D008193 3.4e-131 472.6 405 60.7
AUR62028620 Chenopodium quinoa HOM05D006570 ORTHO05D008193 4.9e-130 468.8 433 56.6
HPP92_007590 Vanilla planifolia HOM05D006570 ORTHO05D008193 8.3e-130 468.0 438 56.4
CAN.G3.13 Capsicum annuum HOM05D006570 ORTHO05D008193 1.4e-129 467.2 385 60.3
Zm00001eb411200 Zea mays HOM05D006570 ORTHO05D008193 1.8e-129 466.8 452 56.2
Os12g0211400 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 4.1e-129 465.7 420 57.6
AUR62008045 Chenopodium quinoa HOM05D006570 ORTHO05D008193 5.4e-129 465.3 461 55.5
AUR62032342 Chenopodium quinoa HOM05D006570 ORTHO05D008193 5.4e-129 465.3 461 55.5
Rhsim13G0056200 Rhododendron simsii HOM05D006570 ORTHO05D008193 7.0e-129 464.9 392 62.2
Hund09495 Selenicereus undatus HOM05D006570 ORTHO05D008193 1.0e-127 461.1 380 60.5
MELO3C022371.2 Cucumis melo HOM05D006570 ORTHO05D008193 1.5e-126 457.2 425 57.4
SHI10196 Sapria himalayana HOM05D006570 ORTHO05D008193 1.4e-124 450.7 450 52.9
Hma1.2p1_0834F.1_g225710 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 3.0e-124 449.5 366 63.1
SEGI_12299 Sequoiadendron giganteum HOM05D006570 ORTHO05D008193 7.0e-121 438.3 438 53.4
Lsat_1_v5_gn_8_98640 Lactuca sativa HOM05D006570 ORTHO05D008193 2.7e-120 436.4 426 56.8
Os12g0212100 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 2.6e-115 419.9 350 61.1
FAN25G2405 Fragaria x ananassa HOM05D006570 ORTHO05D008193 6.0e-112 408.7 529 46.3
Hma1.2p1_1756F.1_g301050 Hydrangea macrophylla HOM05D006570 ORTHO05D008193 1.8e-108 397.1 320 63.4
unitig_90.g27554 Utricularia gibba HOM05D006570 ORTHO05D008193 4.0e-108 396.0 424 51.7
Pp3c18_200 Physcomitrium patens HOM05D006570 ORTHO05D008193 2.4e-105 386.7 498 45.8
Actinidia23139 Actinidia chinensis HOM05D006570 ORTHO05D008193 6.6e-103 378.6 446 49.3
Mapoly0043s0062 Marchantia polymorpha HOM05D006570 ORTHO05D008193 2.4e-97 360.1 441 45.4
MBI10_g40441_MAGBIO Magnolia biondii HOM05D006570 ORTHO05D008193 2.7e-96 356.7 316 58.9
Eucgr.H00676 Eucalyptus grandis HOM05D006570 ORTHO05D008193 1.3e-95 354.4 299 60.5
SMO202G0040 Selaginella moellendorffii HOM05D006570 ORTHO05D008193 1.4e-81 307.8 288 56.6
QL01p050877 Quercus lobata HOM05D006570 ORTHO05D008193 2.1e-80 303.9 270 59.3
FAN11G0847 Fragaria x ananassa HOM05D006570 ORTHO05D008193 9.6e-78 295.0 246 59.8
PRCOL_00001086 Prasinoderma coloniale HOM05D006570 ORTHO05D008193 1.0e-71 275.0 402 41.8
MCO12G048 Micromonas commoda HOM05D006570 ORTHO05D008193 1.8e-71 274.2 491 38.5
Cre02.g082000 Chlamydomonas reinhardtii HOM05D006570 ORTHO05D008193 1.8e-60 237.7 529 33.1
CSS0008113 Camellia sinensis var. sinensis HOM05D006570 ORTHO05D008193 3.3e-54 216.9 126 81.0
CSS0032158 Camellia sinensis var. sinensis HOM05D006570 ORTHO05D008193 3.3e-54 216.9 126 81.0
GSVIVG01038286001 Vitis vinifera HOM05D006570 ORTHO05D008193 3.8e-50 203.4 185 55.1
Ca_29093_v3 Cicer arietinum L. HOM05D006570 ORTHO05D008193 1.4e-44 184.9 279 40.9
Glyma.16G028601 Glycine max HOM05D006570 ORTHO05D008193 1.7e-42 177.9 115 79.1
QL01p050896 Quercus lobata HOM05D006570 ORTHO05D008193 2.3e-39 167.5 113 74.3
DCAR_012713 Daucus carota HOM05D006570 ORTHO05D008193 1.1e-38 165.2 132 62.9
CDE02G1275 Ceratophyllum demersum HOM05D006570 ORTHO05D008193 7.2e-33 146.0 122 59.8
QL05p014267 Quercus lobata HOM05D006570 ORTHO05D008193 3.7e-29 133.7 190 42.6
QL05p014599 Quercus lobata HOM05D006570 ORTHO05D008193 4.2e-25 120.2 128 54.7
CBR_g38520 Chara braunii HOM05D000019 ORTHO05D000048 9.8e-22 109.0 70 71.4
PGR142G0081 Punica granatum HOM05D006570 ORTHO05D008193 2.3e-18 97.8 130 45.4
CBR_g38518 Chara braunii HOM05D000019 ORTHO05D000048 4.9e-13 80.1 140 37.1
Sed0019525 Sechium edule HOM05D004358 ORTHO05D004960 8.0e-08 62.8 157 32.5
Hund03151 Selenicereus undatus HOM05D004358 ORTHO05D004960 1.4e-07 62.0 154 29.9
Peaxi162Scf00058g01717 Petunia axillaris HOM05D004358 ORTHO05D004960 1.8e-07 61.6 238 26.9
Medtr4g067060 Medicago truncatula HOM05D004358 ORTHO05D004960 2.3e-07 61.2 187 26.7
Os12g0211301 Oryza sativa ssp. japonica HOM05D006570 ORTHO05D008193 2.3e-07 61.2 63 49.2
RcHm_v2.0_Chr4g0407021 Rosa chinensis HOM05D004358 ORTHO05D004960 3.1e-07 60.8 193 28.0
A03p17630 Brassica napus HOM05D004358 ORTHO05D004960 4.0e-07 60.5 194 26.3
BraA03t11028Z Brassica rapa HOM05D004358 ORTHO05D004960 4.0e-07 60.5 194 26.3
TPR.G34203 Trifolium pratense HOM05D004358 ORTHO05D004960 4.0e-07 60.5 204 26.5
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 5.2e-07 60.1 194 26.3
Sp4g13930 Schrenkiella parvula HOM05D004358 ORTHO05D004960 5.2e-07 60.1 194 25.8
BcaB01g04044 Brassica carinata HOM05D004358 ORTHO05D004960 6.8e-07 59.7 194 25.8
SGA_v2.0_scaffold181G39728 Striga asiatica HOM05D004358 ORTHO05D004960 6.8e-07 59.7 155 29.7
FAN12G1706 Fragaria x ananassa HOM05D004358 ORTHO05D004960 8.9e-07 59.3 186 27.4
Psat7g213960 Pisum sativum HOM05D004358 ORTHO05D004960 1.2e-06 58.9 193 25.9
BcaC01g05950 Brassica carinata HOM05D004358 ORTHO05D004960 1.5e-06 58.5 194 25.8
C03p20720 Brassica napus HOM05D004358 ORTHO05D004960 1.5e-06 58.5 194 25.8
BolC3t14451H Brassica oleracea HOM05D004358 ORTHO05D004960 1.5e-06 58.5 194 25.8
unitig_8.g4603 Utricularia gibba HOM05D004358 ORTHO05D004960 1.5e-06 58.5 193 25.9
AL4G26720 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 2.0e-06 58.2 194 26.3
FvH4_4g10690 Fragaria vesca HOM05D004358 ORTHO05D004960 2.0e-06 58.2 192 26.6
FAN12G4165 Fragaria x ananassa HOM05D004358 ORTHO05D004960 2.0e-06 58.2 192 26.6
Lsat_1_v5_gn_8_80540 Lactuca sativa HOM05D004358 ORTHO05D004960 2.0e-06 58.2 190 27.4
Manes.04G041200 Manihot esculenta HOM05D004358 ORTHO05D004960 2.0e-06 58.2 193 27.5
Ca_20780_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 2.6e-06 57.8 199 27.1
AT1G05900 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 3.4e-06 57.4 152 27.6
Cfa015153 Carpinus fangiana HOM05D004358 ORTHO05D004960 3.4e-06 57.4 187 28.3
Mapoly0058s0068 Marchantia polymorpha HOM05D004358 ORTHO05D004960 3.4e-06 57.4 193 26.9
Prupe.1G191600 Prunus persica HOM05D004358 ORTHO05D004960 3.4e-06 57.4 193 26.4
Sopen09g031880 Solanum pennellii HOM05D004358 ORTHO05D004960 3.4e-06 57.4 151 31.1
Duzib151G0384 Durio zibethinus HOM05D004358 ORTHO05D004960 4.4e-06 57.0 187 26.7
Thhalv10016815m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 4.4e-06 57.0 154 28.6
MD04G1007400 Malus domestica HOM05D004358 ORTHO05D004960 4.4e-06 57.0 187 26.7
SMO347G0587 Selaginella moellendorffii HOM05D004358 ORTHO05D004960 4.4e-06 57.0 199 25.6
Haze_01520 Corylus avellana HOM05D004358 ORTHO05D004960 5.8e-06 56.6 158 27.8
MELO3C017721.2 Cucumis melo HOM05D004358 ORTHO05D004960 5.8e-06 56.6 158 28.5
Carub.0001s0527 Capsella rubella HOM05D004358 ORTHO05D004960 7.5e-06 56.2 193 25.4
COL.COLO4_02723 Corchorus olitorius HOM05D004358 ORTHO05D004960 7.5e-06 56.2 192 27.1
Eucgr.H00376 Eucalyptus grandis HOM05D004358 ORTHO05D004960 7.5e-06 56.2 151 29.8
Nitab4.5_0001787g0060 Nicotiana tabacum HOM05D004358 ORTHO05D004960 7.5e-06 56.2 296 25.3
AL1G15860 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 9.8e-06 55.8 146 28.8
ECA236G3148 Erigeron canadensis HOM05D004358 ORTHO05D004960 9.8e-06 55.8 162 27.8


User provided reference genes

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