Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr7g099100 Medicago truncatula HOM05D002340 ORTHO05D264306 1.2e-79 299.7 146 100.0
Medtr1g106040 Medicago truncatula HOM05D002340 ORTHO05D003624 1.2e-21 107.1 77 71.4
TPR.G29186 Trifolium pratense HOM05D002340 ORTHO05D003624 2.0e-21 106.3 77 71.4
TPR.G1096 Trifolium pratense HOM05D002340 ORTHO05D003624 1.3e-20 103.6 77 68.8
Medtr4g102240 Medicago truncatula HOM05D002340 ORTHO05D003624 2.9e-20 102.4 89 59.6
Ca_25566_v3 Cicer arietinum L. HOM05D002340 ORTHO05D003624 3.2e-19 99.0 77 66.2
Psat3g015880 Pisum sativum HOM05D002340 ORTHO05D003624 9.4e-19 97.4 77 64.9
Medtr3g110380 Medicago truncatula HOM05D002340 ORTHO05D003624 3.9e-17 92.0 77 62.3
Lj2g0021832 Lotus japonicus HOM05D002340 ORTHO05D003624 1.5e-16 90.1 78 61.5
arahy.Tifrunner.gnm1.ann1.7UQC80 Arachis hypogaea HOM05D002340 ORTHO05D003624 3.7e-15 85.5 76 57.9
arahy.Tifrunner.gnm1.ann1.V4S00D Arachis hypogaea HOM05D002340 ORTHO05D003624 3.7e-15 85.5 76 57.9
Phvul.004G174900 Phaseolus vulgaris HOM05D002340 ORTHO05D003624 1.8e-14 83.2 76 56.6
arahy.Tifrunner.gnm1.ann1.4N8NIC Arachis hypogaea HOM05D002340 ORTHO05D003624 4.1e-14 82.0 76 53.9
Glyma.07G125400 Glycine max HOM05D002340 ORTHO05D003624 5.3e-14 81.6 88 50.0
VMungo0464G0065 Vigna mungo HOM05D002340 ORTHO05D003624 5.3e-14 81.6 91 49.5
Lalb_Chr14g0371951 Lupinus albus HOM05D002340 ORTHO05D003624 7.0e-14 81.3 88 48.9
Sc18g0001570 Simmondsia chinensis HOM05D002340 ORTHO05D003624 7.0e-14 81.3 69 60.9
EL10Ac8g18367 Beta vulgaris HOM05D002340 ORTHO05D003624 1.2e-13 80.5 72 55.6
TAR636G0019 Trochodendron aralioides HOM05D002340 ORTHO05D003624 1.2e-13 80.5 72 58.3
TAR626G1290 Trochodendron aralioides HOM05D002340 ORTHO05D003624 2.0e-13 79.7 72 56.9
EL10Ac5g10899 Beta vulgaris HOM05D002340 ORTHO05D003624 2.6e-13 79.3 91 50.5
Glyma.01G006400 Glycine max HOM05D002340 ORTHO05D003624 2.6e-13 79.3 88 47.7
Nn6g34608 Nelumbo nucifera HOM05D002340 ORTHO05D003624 3.5e-13 79.0 72 55.6
Hund26287 Selenicereus undatus HOM05D002340 ORTHO05D003624 5.9e-13 78.2 69 58.0
MBI04_g27274_MAGBIO Magnolia biondii HOM05D002340 ORTHO05D003624 7.7e-13 77.8 72 55.6
Atru.chr7.1478 Acer truncatum HOM05D002340 ORTHO05D003624 1.0e-12 77.4 72 54.2
Ah.09g230510 Amaranthus hybridus HOM05D002340 ORTHO05D003624 1.0e-12 77.4 69 55.1
AUR62010877 Chenopodium quinoa HOM05D002340 ORTHO05D003624 1.3e-12 77.0 69 55.1
Lj4A371G17 Lonicera japonica HOM05D002340 ORTHO05D003624 1.3e-12 77.0 72 51.4
arahy.Tifrunner.gnm1.ann1.P5D7YP Arachis hypogaea HOM05D002340 ORTHO05D003624 1.7e-12 76.6 76 52.6
Ciclev10007707m.g Citrus clementina HOM05D002340 ORTHO05D003624 1.7e-12 76.6 72 54.2
Lj2g0007018 Lotus japonicus HOM05D002340 ORTHO05D003624 1.7e-12 76.6 77 49.4
Phvul.004G174700 Phaseolus vulgaris HOM05D002340 ORTHO05D003624 1.7e-12 76.6 76 50.0
VMungo0464G1080 Vigna mungo HOM05D002340 ORTHO05D003624 1.7e-12 76.6 76 50.0
AUR62021390 Chenopodium quinoa HOM05D002340 ORTHO05D003624 2.2e-12 76.3 69 55.1
MBI04_g07003_MAGBIO Magnolia biondii HOM05D002340 ORTHO05D003624 2.2e-12 76.3 72 52.8
Nn6g34972 Nelumbo nucifera HOM05D002340 ORTHO05D003624 2.9e-12 75.9 72 52.8
HPP92_000835 Vanilla planifolia HOM05D002340 ORTHO05D003624 2.9e-12 75.9 73 53.4
Glyma.01G006100 Glycine max HOM05D002340 ORTHO05D003624 3.8e-12 75.5 76 48.7
PSO761G0177 Papaver somniferum HOM05D002340 ORTHO05D003624 5.0e-12 75.1 72 51.4
Solyc12g008570.3 Solanum lycopersicum HOM05D002340 ORTHO05D003624 5.0e-12 75.1 75 50.7
Sopen12g003510 Solanum pennellii HOM05D002340 ORTHO05D003624 5.0e-12 75.1 75 50.7
Actinidia17513 Actinidia chinensis HOM05D002340 ORTHO05D003624 6.5e-12 74.7 73 52.1
CiPaw.04G155400 Carya illinoinensis HOM05D002340 ORTHO05D003624 6.5e-12 74.7 72 55.6
FAN28G0482 Fragaria x ananassa HOM05D002340 ORTHO05D003624 6.5e-12 74.7 77 50.6
Lsat_1_v5_gn_5_60361 Lactuca sativa HOM05D002340 ORTHO05D003624 6.5e-12 74.7 69 55.1
Manes.16G107800 Manihot esculenta HOM05D002340 ORTHO05D003624 6.5e-12 74.7 72 52.8
Nitab4.5_0000566g0240 Nicotiana tabacum HOM05D002340 ORTHO05D003624 6.5e-12 74.7 75 50.7
MD02G1067300 Malus domestica HOM05D002340 ORTHO05D003624 8.5e-12 74.3 73 50.7
Nitab4.5_0003079g0060 Nicotiana tabacum HOM05D002340 ORTHO05D003624 8.5e-12 74.3 75 50.7
PSO210G4972 Papaver somniferum HOM05D002340 ORTHO05D003624 8.5e-12 74.3 72 51.4
CANSAT56G1193 Cannabis sativa HOM05D002340 ORTHO05D003624 1.1e-11 73.9 72 52.8
CANSAT56G1362 Cannabis sativa HOM05D002340 ORTHO05D003624 1.1e-11 73.9 72 52.8
Ca_25586_v3 Cicer arietinum L. HOM05D002340 ORTHO05D003624 1.1e-11 73.9 91 40.7
Medtr6g088865 Medicago truncatula HOM05D002340 ORTHO05D003624 1.1e-11 73.9 94 40.4
HanXRQChr03g0082941 Helianthus annuus HOM05D002340 ORTHO05D003624 1.5e-11 73.6 69 53.6
Prupe.7G218100 Prunus persica HOM05D002340 ORTHO05D003624 1.5e-11 73.6 72 52.8
Cc06_g10610 Coffea canephora HOM05D002340 ORTHO05D003624 1.9e-11 73.2 73 47.9
FvH4_1g06400 Fragaria vesca HOM05D002340 ORTHO05D003624 2.5e-11 72.8 77 48.1
FAN19G1928 Fragaria x ananassa HOM05D002340 ORTHO05D003624 2.5e-11 72.8 77 48.1
FAN26G0661 Fragaria x ananassa HOM05D002340 ORTHO05D003624 2.5e-11 72.8 77 48.1
FAN26G2770 Fragaria x ananassa HOM05D002340 ORTHO05D003624 2.5e-11 72.8 77 48.1
Lalb_Chr23g0270771 Lupinus albus HOM05D002340 ORTHO05D003624 2.5e-11 72.8 88 45.5
Psat1g050800 Pisum sativum HOM05D002340 ORTHO05D003624 2.5e-11 72.8 93 39.8
TPR.G33535 Trifolium pratense HOM05D002340 ORTHO05D003624 2.5e-11 72.8 92 39.1
MD15G1198200 Malus domestica HOM05D002340 ORTHO05D003624 3.2e-11 72.4 72 51.4
Os05g0163000 Oryza sativa ssp. japonica HOM05D002340 ORTHO05D003624 3.2e-11 72.4 72 52.8
CAN.G1964.3 Capsicum annuum HOM05D002340 ORTHO05D003624 4.2e-11 72.0 75 50.7
SGA_v2.0_scaffold92G28226 Striga asiatica HOM05D002340 ORTHO05D003624 4.2e-11 72.0 72 47.2
Zm00001eb282310 Zea mays HOM05D002340 ORTHO05D003624 4.2e-11 72.0 94 42.6
Dinv36722 Davidia involucrata HOM05D002340 ORTHO05D003624 5.5e-11 71.6 72 50.0
Dinv42257 Davidia involucrata HOM05D002340 ORTHO05D003624 5.5e-11 71.6 72 50.0
PGR102G0228 Punica granatum HOM05D002340 ORTHO05D003624 5.5e-11 71.6 70 52.9
Hma1.2p1_0663F.1_g198380 Hydrangea macrophylla HOM05D002340 ORTHO05D003624 7.2e-11 71.2 72 51.4
TAR624G0296 Trochodendron aralioides HOM05D002340 ORTHO05D003624 7.2e-11 71.2 65 56.9
unitig_46.g18028 Utricularia gibba HOM05D002340 ORTHO05D003624 7.2e-11 71.2 71 46.5
ClCG03G016050 Citrullus lanatus HOM05D002340 ORTHO05D003624 9.4e-11 70.9 73 49.3
COL.COLO4_34725 Corchorus olitorius HOM05D002340 ORTHO05D003624 9.4e-11 70.9 72 51.4
Eucgr.C03716 Eucalyptus grandis HOM05D002340 ORTHO05D003624 9.4e-11 70.9 72 51.4
Glyma.10G102800 Glycine max HOM05D002340 ORTHO05D003624 9.4e-11 70.9 72 47.2
HanXRQChr03g0082931 Helianthus annuus HOM05D002340 ORTHO05D003624 9.4e-11 70.9 69 49.3
Manes.03G028000 Manihot esculenta HOM05D002340 ORTHO05D003624 9.4e-11 70.9 72 50.0
vmacro10846 Vaccinium macrocarpon HOM05D002340 ORTHO05D003624 9.4e-11 70.9 72 50.0
ATR0705G107 Amborella trichopoda HOM05D002340 ORTHO05D003624 1.2e-10 70.5 78 51.3
MSTRG.1189 Avicennia marina HOM05D002340 ORTHO05D003624 1.2e-10 70.5 72 48.6
THA.LOC104813480 Tarenaya hassleriana HOM05D002340 ORTHO05D003624 1.2e-10 70.5 72 52.8
CDE05G0481 Ceratophyllum demersum HOM05D002340 ORTHO05D003624 1.6e-10 70.1 72 52.8
Duzib168G1789 Durio zibethinus HOM05D002340 ORTHO05D003624 1.6e-10 70.1 74 48.6
Migut.C00842 Erythranthe guttata HOM05D002340 ORTHO05D003624 1.6e-10 70.1 69 49.3
RcHm_v2.0_Chr2g0092141 Rosa chinensis HOM05D002340 ORTHO05D003624 2.1e-10 69.7 72 50.0
Sp7g24270 Schrenkiella parvula HOM05D002340 ORTHO05D003624 2.1e-10 69.7 73 50.7
Atru.chr10.2308 Acer truncatum HOM05D002340 ORTHO05D003624 2.7e-10 69.3 78 46.2
Cpa.g.sc78.27 Carica papaya HOM05D002340 ORTHO05D003624 2.7e-10 69.3 72 50.0
Duzib150G1035 Durio zibethinus HOM05D002340 ORTHO05D003624 3.6e-10 68.9 73 47.9
Aa31LG3G690 Aethionema arabicum HOM05D002340 ORTHO05D003624 4.7e-10 68.6 72 50.0
Mapoly0066s0109 Marchantia polymorpha HOM05D002340 ORTHO05D003624 4.7e-10 68.6 75 48.0
Oeu041057.1 Olea europaea HOM05D002340 ORTHO05D003624 4.7e-10 68.6 72 44.4
SEGI_11723 Sequoiadendron giganteum HOM05D002340 ORTHO05D003624 4.7e-10 68.6 72 48.6
THA.LOC104817738 Tarenaya hassleriana HOM05D002340 ORTHO05D003624 4.7e-10 68.6 72 50.0
Thecc.09G098900 Theobroma cacao HOM05D002340 ORTHO05D003624 4.7e-10 68.6 72 48.6
BraA03t14729Z Brassica rapa HOM05D002340 ORTHO05D003624 6.1e-10 68.2 72 50.0
ECA240G1136 Erigeron canadensis HOM05D002340 ORTHO05D003624 6.1e-10 68.2 69 52.2
QL02p040888 Quercus lobata HOM05D002340 ORTHO05D003624 6.1e-10 68.2 72 47.2
AL3G45140 Arabidopsis lyrata HOM05D002340 ORTHO05D003624 8.0e-10 67.8 72 50.0
AL7G26650 Arabidopsis lyrata HOM05D002340 ORTHO05D003624 8.0e-10 67.8 72 50.0
AT4G26300 Arabidopsis thaliana HOM05D002340 ORTHO05D003624 8.0e-10 67.8 72 50.0
CSS0027203 Camellia sinensis var. sinensis HOM05D002340 ORTHO05D003624 8.0e-10 67.8 72 48.6
CsaV3_1G039910 Cucumis sativus L. HOM05D002340 ORTHO05D003624 8.0e-10 67.8 72 47.2
Thhalv10024637m.g Eutrema salsugineum HOM05D002340 ORTHO05D003624 8.0e-10 67.8 72 50.0
FAN23G3056 Fragaria x ananassa HOM05D002340 ORTHO05D003624 8.0e-10 67.8 81 44.4
BcaC06g32760 Brassica carinata HOM05D002340 ORTHO05D003624 1.0e-09 67.4 72 47.2
BcaC09g50688 Brassica carinata HOM05D002340 ORTHO05D003624 1.0e-09 67.4 72 48.6
BcaNung02430 Brassica carinata HOM05D002340 ORTHO05D003624 1.0e-09 67.4 72 48.6
A01p17560 Brassica napus HOM05D002340 ORTHO05D003624 1.0e-09 67.4 72 48.6
C01p22130 Brassica napus HOM05D002340 ORTHO05D003624 1.0e-09 67.4 72 48.6
BolC1t02144H Brassica oleracea HOM05D002340 ORTHO05D003624 1.0e-09 67.4 72 48.6
BraA01t01709Z Brassica rapa HOM05D002340 ORTHO05D003624 1.0e-09 67.4 72 48.6
DCAR_024710 Daucus carota HOM05D002340 ORTHO05D003624 1.0e-09 67.4 73 49.3
DCAR_031954 Daucus carota HOM05D002340 ORTHO05D003624 1.0e-09 67.4 73 49.3
Gohir.A05G026400 Gossypium hirsutum HOM05D002340 ORTHO05D003624 1.0e-09 67.4 72 47.2
Gohir.A08G243400 Gossypium hirsutum HOM05D002340 ORTHO05D003624 1.0e-09 67.4 72 48.6
Gohir.D08G264300 Gossypium hirsutum HOM05D002340 ORTHO05D003624 1.0e-09 67.4 72 48.6
Gorai.004G282200 Gossypium raimondii HOM05D002340 ORTHO05D003624 1.0e-09 67.4 72 48.6
Sed0028067 Sechium edule HOM05D002340 ORTHO05D003624 1.0e-09 67.4 72 48.6
A03p56590 Brassica napus HOM05D002340 ORTHO05D003624 1.4e-09 67.0 72 48.6
C07p54790 Brassica napus HOM05D002340 ORTHO05D003624 1.4e-09 67.0 72 48.6
BolC7t45968H Brassica oleracea HOM05D002340 ORTHO05D003624 1.4e-09 67.0 72 48.6
MELO3C015422.2 Cucumis melo HOM05D002340 ORTHO05D003624 1.4e-09 67.0 72 47.2
TWI63G0999 Tripterygium wilfordii HOM05D002340 ORTHO05D003624 1.4e-09 67.0 72 48.6
vmacro07947 Vaccinium macrocarpon HOM05D002340 ORTHO05D003624 1.4e-09 67.0 86 41.9
AL2G24500 Arabidopsis lyrata HOM05D002340 ORTHO05D003624 1.8e-09 66.6 72 48.6
AT1G66530 Arabidopsis thaliana HOM05D002340 ORTHO05D003624 1.8e-09 66.6 72 47.2
MSTRG.25252 Avicennia marina HOM05D002340 ORTHO05D003624 1.8e-09 66.6 72 45.8
Carub.0004s0592 Capsella rubella HOM05D002340 ORTHO05D003624 1.8e-09 66.6 72 48.6
Potri.002G198500 Populus trichocarpa HOM05D002340 ORTHO05D003624 1.8e-09 66.6 73 50.7
CSS0024858 Camellia sinensis var. sinensis HOM05D002340 ORTHO05D003624 2.3e-09 66.2 72 47.2
Carub.0007s1465 Capsella rubella HOM05D002340 ORTHO05D003624 2.3e-09 66.2 72 48.6
Sed0015409 Sechium edule HOM05D002340 ORTHO05D003624 2.3e-09 66.2 72 47.2
Atru.chr12.1556 Acer truncatum HOM05D002340 ORTHO05D003624 3.0e-09 65.9 75 42.7
Carub.0002s1257 Capsella rubella HOM05D002340 ORTHO05D003624 3.0e-09 65.9 72 48.6
CARHR233870 Cardamine hirsuta HOM05D002340 ORTHO05D003624 3.0e-09 65.9 72 47.2
HanXRQChr15g0484831 Helianthus annuus HOM05D002340 ORTHO05D003624 4.0e-09 65.5 66 48.5
Gohir.D05G027900 Gossypium hirsutum HOM05D002340 ORTHO05D003624 5.2e-09 65.1 72 45.8
CiPaw.03G223100 Carya illinoinensis HOM05D002340 ORTHO05D003624 6.7e-09 64.7 64 53.1
Rhsim05G0038200 Rhododendron simsii HOM05D002340 ORTHO05D003624 6.7e-09 64.7 72 47.2
SalBow7G2393 Salvia bowleyana HOM05D002340 ORTHO05D003624 6.7e-09 64.7 72 43.1
AL5G11670 Arabidopsis lyrata HOM05D002340 ORTHO05D080373 1.2e-08 63.9 96 40.6
CANSAT11G1397 Cannabis sativa HOM05D002340 ORTHO05D003624 1.2e-08 63.9 76 44.7
Aqoxy2G01698 Aquilegia oxysepala HOM05D002340 ORTHO05D003624 1.5e-08 63.5 70 45.7
Aqoxy2G02463 Aquilegia oxysepala HOM05D002340 ORTHO05D003624 1.5e-08 63.5 70 45.7
Gorai.009G028100 Gossypium raimondii HOM05D002340 ORTHO05D003624 1.5e-08 63.5 72 44.4
CBR_g3146 Chara braunii HOM05D002340 ORTHO05D003624 2.0e-08 63.2 69 43.5
Pp3c11_1000 Physcomitrium patens HOM05D002340 ORTHO05D003624 2.0e-08 63.2 73 46.6
Sabra02G0159200 Salix brachista HOM05D002340 ORTHO05D003624 2.6e-08 62.8 65 52.3
ECA232G2040 Erigeron canadensis HOM05D002340 ORTHO05D003624 4.4e-08 62.0 71 47.9
Peaxi162Scf00944g00011 Petunia axillaris HOM05D002340 ORTHO05D003624 4.4e-08 62.0 70 47.1
Os01g0158500 Oryza sativa ssp. japonica HOM05D002340 ORTHO05D003624 5.7e-08 61.6 71 42.3
AUR62017694 Chenopodium quinoa HOM05D002340 ORTHO05D003624 9.7e-08 60.8 51 58.8
Zm00001eb353940 Zea mays HOM05D002340 ORTHO05D003624 9.7e-08 60.8 71 45.1
RcHm_v2.0_Chr3g0454641 Rosa chinensis HOM05D002340 ORTHO05D003624 2.2e-07 59.7 76 42.1
SHI02645 Sapria himalayana HOM05D002340 ORTHO05D003624 8.2e-07 57.8 70 42.9
BcaB03g12499 Brassica carinata HOM05D002340 ORTHO05D003624 1.1e-06 57.4 74 43.2
A08p20810 Brassica napus HOM05D002340 ORTHO05D003624 1.1e-06 57.4 74 43.2
BraA08t34036Z Brassica rapa HOM05D002340 ORTHO05D003624 1.1e-06 57.4 74 43.2
BcaC07g38230 Brassica carinata HOM05D002340 ORTHO05D003624 4.1e-06 55.5 74 41.9
C08p09840 Brassica napus HOM05D002340 ORTHO05D003624 4.1e-06 55.5 74 41.9
BolC8t48659H Brassica oleracea HOM05D002340 ORTHO05D003624 4.1e-06 55.5 74 41.9
Haze_25836 Corylus avellana HOM05D002340 ORTHO05D003624 7.0e-06 54.7 58 50.0
SMO367G0891 Selaginella moellendorffii HOM05D002340 ORTHO05D003624 7.0e-06 54.7 75 42.7
AL2G22960 Arabidopsis lyrata HOM05D002340 ORTHO05D003624 9.1e-06 54.3 62 46.8
TPR.G29740 Trifolium pratense HOM05D002340 ORTHO05D003624 9.1e-06 54.3 61 54.1


User provided reference genes

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