Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr7g095000 Medicago truncatula HOM05D004820 ORTHO05D005946 2.4e-197 692.2 412 100.0
TPR.G9917 Trifolium pratense HOM05D004820 ORTHO05D005946 1.4e-189 666.4 413 93.9
Ca_08606_v3 Cicer arietinum L. HOM05D004820 ORTHO05D005946 5.1e-187 657.9 412 95.1
Psat3g064000 Pisum sativum HOM05D004820 ORTHO05D005946 5.6e-186 654.4 412 95.4
Glyma.19G157200 Glycine max HOM05D004820 ORTHO05D005946 4.9e-182 641.3 410 86.8
Glyma.03G155000 Glycine max HOM05D004820 ORTHO05D005946 1.6e-180 636.3 414 87.4
Lj4g0024215 Lotus japonicus HOM05D004820 ORTHO05D005946 5.5e-173 611.3 412 86.2
VMungo1383G2933 Vigna mungo HOM05D004820 ORTHO05D005946 5.1e-171 604.7 412 83.0
Manes.01G206900 Manihot esculenta HOM05D004820 ORTHO05D005946 1.8e-168 596.3 414 85.3
Eucgr.K03365 Eucalyptus grandis HOM05D004820 ORTHO05D005946 2.0e-167 592.8 415 85.8
CiPaw.08G106000 Carya illinoinensis HOM05D004820 ORTHO05D005946 1.9e-165 586.3 416 82.0
arahy.Tifrunner.gnm1.ann1.HALK3W Arachis hypogaea HOM05D004820 ORTHO05D005946 3.2e-165 585.5 427 80.1
arahy.Tifrunner.gnm1.ann1.JHLY8X Arachis hypogaea HOM05D004820 ORTHO05D005946 7.1e-165 584.3 427 79.9
arahy.Tifrunner.gnm1.ann1.NQ54M2 Arachis hypogaea HOM05D004820 ORTHO05D005946 1.2e-164 583.6 427 79.9
Atru.chr5.1456 Acer truncatum HOM05D004820 ORTHO05D005946 2.1e-164 582.8 420 80.0
Phvul.005G035400 Phaseolus vulgaris HOM05D004820 ORTHO05D005946 1.3e-163 580.1 413 81.8
Cpa.g.sc52.45 Carica papaya HOM05D004820 ORTHO05D005946 8.7e-163 577.4 422 81.8
CsaV3_7G028060 Cucumis sativus L. HOM05D004820 ORTHO05D005946 1.9e-162 576.2 422 82.9
TWI14G0518 Tripterygium wilfordii HOM05D004820 ORTHO05D005946 5.7e-162 574.7 413 80.6
Ciclev10020348m.g Citrus clementina HOM05D004820 ORTHO05D005946 7.4e-162 574.3 417 81.5
CANSAT25G3765 Cannabis sativa HOM05D004820 ORTHO05D005946 2.2e-161 572.8 420 81.4
Potri.005G210600 Populus trichocarpa HOM05D004820 ORTHO05D005946 2.2e-161 572.8 419 82.1
PGR044G0684 Punica granatum HOM05D004820 ORTHO05D005946 6.3e-161 571.2 416 84.9
Oeu041704.1 Olea europaea HOM05D004820 ORTHO05D005946 3.1e-160 568.9 421 83.8
Cc03_g10020 Coffea canephora HOM05D004820 ORTHO05D005946 5.3e-160 568.2 413 81.1
arahy.Tifrunner.gnm1.ann1.X2D3U2 Arachis hypogaea HOM05D004820 ORTHO05D005946 5.9e-159 564.7 427 77.8
Duzib211G0468 Durio zibethinus HOM05D004820 ORTHO05D005946 1.0e-158 563.9 417 83.9
MELO3C015826.2 Cucumis melo HOM05D004820 ORTHO05D005946 1.3e-158 563.5 427 79.4
Nn4g26288 Nelumbo nucifera HOM05D004820 ORTHO05D005946 2.2e-158 562.8 423 77.3
QL12p021397 Quercus lobata HOM05D004820 ORTHO05D005946 2.2e-158 562.8 413 77.5
SGA_v2.0_scaffold81G26015 Striga asiatica HOM05D004820 ORTHO05D005946 6.5e-158 561.2 418 75.8
Thecc.01G277300 Theobroma cacao HOM05D004820 ORTHO05D005946 1.9e-157 559.7 417 81.5
Gohir.A08G186300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 5.5e-157 558.1 417 79.6
Gohir.D08G204400 Gossypium hirsutum HOM05D004820 ORTHO05D005946 7.2e-157 557.8 417 79.6
Gorai.004G216400 Gossypium raimondii HOM05D004820 ORTHO05D005946 7.2e-157 557.8 417 79.6
MD03G1263300 Malus domestica HOM05D004820 ORTHO05D005946 7.2e-157 557.8 418 82.8
TAR362G1079 Trochodendron aralioides HOM05D004820 ORTHO05D005946 7.2e-157 557.8 420 75.0
Sabra05G0160800 Salix brachista HOM05D004820 ORTHO05D005946 1.6e-156 556.6 425 80.9
MD11G1284100 Malus domestica HOM05D004820 ORTHO05D005946 3.6e-156 555.4 418 81.8
Gohir.D08G075000 Gossypium hirsutum HOM05D004820 ORTHO05D005946 4.6e-156 555.1 425 72.7
Actinidia00769 Actinidia chinensis HOM05D004820 ORTHO05D005946 6.1e-156 554.7 424 81.4
Gohir.A08G066300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 6.1e-156 554.7 425 79.5
Duzib138G0452 Durio zibethinus HOM05D004820 ORTHO05D005946 7.9e-156 554.3 417 77.5
Sopen09g027030 Solanum pennellii HOM05D004820 ORTHO05D005946 1.7e-153 546.6 414 77.1
THA.LOC104815940 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 2.2e-153 546.2 418 77.0
Migut.N02046 Erythranthe guttata HOM05D004820 ORTHO05D005946 2.8e-153 545.8 420 71.2
CAN.G590.6 Capsicum annuum HOM05D004820 ORTHO05D005946 4.8e-153 545.0 415 71.1
Solyc09g065280.4 Solanum lycopersicum HOM05D004820 ORTHO05D005946 8.2e-153 544.3 414 71.5
THA.LOC104801242 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 8.2e-153 544.3 419 78.0
Lalb_Chr06g0162971 Lupinus albus HOM05D004820 ORTHO05D005946 1.1e-152 543.9 415 77.3
PGSC0003DMG400019362 Solanum tuberosum HOM05D004820 ORTHO05D005946 1.4e-152 543.5 414 75.6
Prupe.8G239700 Prunus persica HOM05D004820 ORTHO05D005946 1.8e-152 543.1 417 82.0
Sed0001544 Sechium edule HOM05D004820 ORTHO05D005946 3.4e-151 538.9 423 79.9
Gorai.004G079300 Gossypium raimondii HOM05D004820 ORTHO05D005946 3.8e-150 535.4 422 70.6
Sc05g0005630 Simmondsia chinensis HOM05D004820 ORTHO05D005946 1.1e-149 533.9 419 72.6
CSS0006431 Camellia sinensis var. sinensis HOM05D004820 ORTHO05D005946 3.2e-149 532.3 397 83.1
MSTRG.17449 Avicennia marina HOM05D004820 ORTHO05D005946 1.2e-148 530.4 415 80.5
Aa31LG1G9390 Aethionema arabicum HOM05D004820 ORTHO05D005946 2.6e-146 522.7 426 73.5
AL1G12610 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 4.4e-146 521.9 422 73.0
PSO210G1690 Papaver somniferum HOM05D004820 ORTHO05D005946 8.2e-145 517.7 411 75.4
A09p68340 Brassica napus HOM05D004820 ORTHO05D005946 5.0e-142 508.4 418 68.4
PSO761G0350 Papaver somniferum HOM05D004820 ORTHO05D005946 1.1e-141 507.3 411 69.8
HPP92_018354 Vanilla planifolia HOM05D004820 ORTHO05D005946 9.4e-141 504.2 422 73.9
C08p52910 Brassica napus HOM05D004820 ORTHO05D005946 1.2e-140 503.8 416 72.1
Lsat_1_v5_gn_5_187781 Lactuca sativa HOM05D004820 ORTHO05D005946 3.6e-140 502.3 399 75.9
AUR62012894 Chenopodium quinoa HOM05D004820 ORTHO05D005946 6.7e-139 498.0 415 71.1
AUR62027118 Chenopodium quinoa HOM05D004820 ORTHO05D005946 8.8e-139 497.7 414 68.8
Carub.0001s0228 Capsella rubella HOM05D004820 ORTHO05D005946 1.1e-138 497.3 331 79.5
FAN15G1635 Fragaria x ananassa HOM05D004820 ORTHO05D005946 1.1e-138 497.3 418 74.6
EL10Ac8g18597 Beta vulgaris HOM05D004820 ORTHO05D005946 1.5e-138 496.9 414 65.9
FvH4_2g23380 Fragaria vesca HOM05D004820 ORTHO05D005946 1.5e-138 496.9 418 71.8
Ah.01g024010 Amaranthus hybridus HOM05D004820 ORTHO05D005946 2.6e-138 496.1 411 72.0
CARHR002470 Cardamine hirsuta HOM05D004820 ORTHO05D005946 3.3e-138 495.7 331 78.9
BolC8t52807H Brassica oleracea HOM05D004820 ORTHO05D005946 4.4e-138 495.4 417 71.9
RcHm_v2.0_Chr6g0290841 Rosa chinensis HOM05D004820 ORTHO05D005946 7.5e-138 494.6 423 73.3
FAN20G0972 Fragaria x ananassa HOM05D004820 ORTHO05D005946 1.3e-137 493.8 418 69.1
HanXRQChr01g0003021 Helianthus annuus HOM05D004820 ORTHO05D005946 1.3e-137 493.8 397 75.8
FAN27G0992 Fragaria x ananassa HOM05D004820 ORTHO05D005946 4.8e-137 491.9 427 72.8
Thhalv10009621m.g Eutrema salsugineum HOM05D004820 ORTHO05D005946 1.2e-135 487.3 325 78.2
FAN24G1940 Fragaria x ananassa HOM05D004820 ORTHO05D005946 1.2e-135 487.3 436 69.0
AT1G03140 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 3.5e-135 485.7 322 78.9
SEGI_11361 Sequoiadendron giganteum HOM05D004820 ORTHO05D005946 3.2e-133 479.2 410 68.3
Lj4g0011679 Lotus japonicus HOM05D004820 ORTHO05D005946 3.6e-132 475.7 395 73.2
BcaC07g42265 Brassica carinata HOM05D004820 ORTHO05D005946 6.1e-132 474.9 395 68.6
Sp1g02160 Schrenkiella parvula HOM05D004820 ORTHO05D005946 2.3e-131 473.0 425 71.1
QL03p020183 Quercus lobata HOM05D004820 ORTHO05D005946 3.0e-131 472.6 383 73.9
BolC8t46841H Brassica oleracea HOM05D004820 ORTHO05D005946 5.7e-130 468.4 331 74.9
A08p37470 Brassica napus HOM05D004820 ORTHO05D005946 7.5e-130 468.0 331 75.2
BraA08t35645Z Brassica rapa HOM05D004820 ORTHO05D005946 7.5e-130 468.0 331 75.2
C08p00420 Brassica napus HOM05D004820 ORTHO05D005946 4.1e-128 462.2 416 68.8
Mapoly0140s0012 Marchantia polymorpha HOM05D004820 ORTHO05D005946 5.9e-127 458.4 415 59.5
ECA248G2754 Erigeron canadensis HOM05D004820 ORTHO05D005946 3.8e-126 455.7 418 65.8
Zm00001eb324990 Zea mays HOM05D004820 ORTHO05D005946 7.2e-125 451.4 441 62.4
Zm00001eb426860 Zea mays HOM05D004820 ORTHO05D005946 4.7e-124 448.7 407 61.7
AL1G45340 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 3.0e-123 446.0 417 63.1
Zm00001eb426810 Zea mays HOM05D004820 ORTHO05D005946 6.8e-123 444.9 409 60.6
Zm00001eb426820 Zea mays HOM05D004820 ORTHO05D005946 3.4e-122 442.6 409 60.9
Pp3c21_19780 Physcomitrium patens HOM05D004820 ORTHO05D005946 6.3e-121 438.3 414 58.7
Zm00001eb426800 Zea mays HOM05D004820 ORTHO05D005946 1.1e-120 437.6 407 60.0
Os07g0571900 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 2.5e-117 426.4 439 60.6
Zm00001eb426850 Zea mays HOM05D004820 ORTHO05D005946 4.7e-116 422.2 388 60.3
SMO356G0463 Selaginella moellendorffii HOM05D004820 ORTHO05D005946 6.8e-115 418.3 390 65.6
Sp5g11480 Schrenkiella parvula HOM05D004820 ORTHO05D005946 1.4e-107 394.0 373 59.5
SpUn0083_0020 Schrenkiella parvula HOM05D004820 ORTHO05D005946 5.2e-107 392.1 372 59.4
PGSC0003DMG400010602 Solanum tuberosum HOM05D004820 ORTHO05D005946 1.3e-102 377.5 412 54.4
Lalb_Chr02g0142711 Lupinus albus HOM05D004820 ORTHO05D005946 6.6e-102 375.2 224 85.3
Rhsim01G0274100 Rhododendron simsii HOM05D004820 ORTHO05D005946 2.8e-100 369.8 289 72.0
PGSC0003DMG400010600 Solanum tuberosum HOM05D004820 ORTHO05D005946 1.5e-98 364.0 316 64.6
COL.COLO4_09079 Corchorus olitorius HOM05D004820 ORTHO05D005946 2.6e-98 363.2 451 58.1
Zm00001eb216840 Zea mays HOM05D004820 ORTHO05D005946 2.7e-95 353.2 410 55.6
AT1G54590 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 1.6e-92 344.0 295 65.8
CBR_g23335 Chara braunii HOM05D004820 ORTHO05D005946 2.6e-90 336.7 441 53.5
Oeu028072.3 Olea europaea HOM05D004820 ORTHO05D005946 1.7e-89 334.0 282 82.3
Solyc07g052190.1 Solanum lycopersicum HOM05D004820 ORTHO05D005946 8.1e-84 315.1 283 61.8
GSVIVG01001158001 Vitis vinifera HOM05D004820 ORTHO05D005946 6.0e-79 298.9 160 90.6
Zm00001eb426870 Zea mays HOM05D004820 ORTHO05D005946 3.8e-73 279.6 168 82.1
SHI31236 Sapria himalayana HOM05D004820 ORTHO05D005946 4.2e-72 276.2 276 57.6
CAN.G198.19 Capsicum annuum HOM05D004820 ORTHO05D005946 1.2e-71 274.6 347 49.3
Sopen07g025700 Solanum pennellii HOM05D004820 ORTHO05D005946 4.6e-71 272.7 334 49.1
Sopen07g025830 Solanum pennellii HOM05D004820 ORTHO05D005946 3.6e-68 263.1 245 58.0
Cpa.g.sc52.46 Carica papaya HOM05D004820 ORTHO05D005946 2.3e-62 243.8 139 87.8
Solyc07g052050.2 Solanum lycopersicum HOM05D004820 ORTHO05D005946 1.7e-57 227.6 158 70.9
SHI31234 Sapria himalayana HOM05D004820 ORTHO05D005946 3.9e-54 216.5 115 90.4
HanXRQChr15g0487721 Helianthus annuus HOM05D004820 ORTHO05D005946 1.2e-50 204.9 167 64.7
Zm00001eb426830 Zea mays HOM05D004820 ORTHO05D005946 2.7e-47 193.7 116 83.6
Sopen07g025690 Solanum pennellii HOM05D004820 ORTHO05D005946 4.3e-45 186.4 125 75.2
Lj1g0027313 Lotus japonicus HOM05D004820 ORTHO05D005946 2.8e-44 183.7 159 61.0
Os03g0701100 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 8.5e-41 172.2 278 45.7
MCO06G052 Micromonas commoda HOM05D004820 ORTHO05D005946 1.1e-37 161.8 156 51.9
Sopen07g025610 Solanum pennellii HOM05D004820 ORTHO05D005946 6.9e-35 152.5 257 41.2
Cre13.g567750 Chlamydomonas reinhardtii HOM05D004820 ORTHO05D005946 1.7e-33 147.9 409 34.5
BraA09t42170Z Brassica rapa HOM05D004820 ORTHO05D005946 2.8e-28 130.6 153 58.8
CARHR182160 Cardamine hirsuta HOM05D004820 ORTHO05D005946 7.7e-26 122.5 114 57.9
Gohir.D05G222300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.7e-25 121.3 64 87.5
Gohir.D11G242500 Gossypium hirsutum HOM05D004820 ORTHO05D005946 5.0e-25 119.8 64 85.9
Gorai.009G229700 Gossypium raimondii HOM05D004820 ORTHO05D005946 5.0e-25 119.8 64 85.9
Gorai.011G187700 Gossypium raimondii HOM05D004820 ORTHO05D005946 2.5e-24 117.5 64 84.4
Zm00001eb078380 Zea mays HOM05D004820 ORTHO05D005946 5.5e-24 116.3 72 80.6
Nitab4.5_0003852g0050 Nicotiana tabacum HOM05D004820 ORTHO05D005946 1.6e-23 114.8 172 42.4
TAR365G1077 Trochodendron aralioides HOM05D004820 ORTHO05D005946 4.7e-23 113.2 97 60.8
Zm00001eb180190 Zea mays HOM05D004820 ORTHO05D005946 1.0e-22 112.1 68 82.4
Zm00001eb017440 Zea mays HOM05D004820 ORTHO05D005946 2.6e-21 107.5 66 80.3
Zm00001eb368520 Zea mays HOM05D004820 ORTHO05D005946 2.6e-21 107.5 68 79.4
Nitab4.5_0003327g0040 Nicotiana tabacum HOM05D004820 ORTHO05D005946 1.1e-16 92.0 153 41.2
Nn4g23784 Nelumbo nucifera HOM05D004820 ORTHO05D005946 1.9e-16 91.3 108 49.1
vmacro14915 Vaccinium macrocarpon HOM05D004820 ORTHO05D005946 5.5e-16 89.7 143 53.1
C06p09790 Brassica napus HOM05D004820 ORTHO05D001418 2.2e-09 67.8 69 53.6
BolC6t36051H Brassica oleracea HOM05D004820 ORTHO05D001418 2.2e-09 67.8 69 53.6
Dinv32923 Davidia involucrata HOM05D004820 ORTHO05D005946 3.2e-08 63.9 39 79.5


User provided reference genes

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