Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g098620 Medicago truncatula HOM05D000216 ORTHO05D000634 4.7e-120 434.5 213 100.0
Medtr4g051120 Medicago truncatula HOM05D000216 ORTHO05D000634 2.1e-96 355.9 221 81.4
Psat2g044360 Pisum sativum HOM05D000216 ORTHO05D000634 8.1e-88 327.4 222 75.2
Lalb_Chr09g0335361 Lupinus albus HOM05D000216 ORTHO05D000634 4.3e-81 305.1 221 70.1
DCAR_032474 Daucus carota HOM05D000216 ORTHO05D000634 1.2e-78 297.0 226 68.1
LjContig00318g0011041 Lotus japonicus HOM05D000216 ORTHO05D000634 7.6e-78 294.3 221 69.7
Hma1.2p1_0414F.1_g147670 Hydrangea macrophylla HOM05D000216 ORTHO05D000634 1.0e-77 293.9 219 70.3
Medtr7g116700 Medicago truncatula HOM05D000216 ORTHO05D000634 1.0e-77 293.9 221 70.1
CAN.G1180.14 Capsicum annuum HOM05D000216 ORTHO05D000634 5.5e-76 288.1 218 68.3
CAN.G1648.10 Capsicum annuum HOM05D000216 ORTHO05D000634 5.5e-76 288.1 218 68.3
Solyc00g500290.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 7.2e-76 287.7 218 68.3
Lsat_1_v5_gn_5_26601 Lactuca sativa HOM05D000216 ORTHO05D000634 9.3e-76 287.3 243 62.1
RcHm_v2.0_CPg0502411 Rosa chinensis HOM05D000216 ORTHO05D000634 9.3e-76 287.3 219 68.9
Atru.chr2.3403 Acer truncatum HOM05D000216 ORTHO05D000634 1.2e-75 287.0 220 67.7
HanXRQChr00c0601g0576531 Helianthus annuus HOM05D000216 ORTHO05D000634 1.6e-75 286.6 243 61.7
HanXRQChr08g0210181 Helianthus annuus HOM05D000216 ORTHO05D000634 1.6e-75 286.6 243 61.7
HanXRQChr11g0326611 Helianthus annuus HOM05D000216 ORTHO05D000634 1.6e-75 286.6 243 61.7
HanXRQCPg0579801 Helianthus annuus HOM05D000216 ORTHO05D001131 1.6e-75 286.6 243 61.7
Potri.013G140260 Populus trichocarpa HOM05D000216 ORTHO05D000634 6.1e-75 284.6 223 67.3
PGSC0003DMG400017664 Solanum tuberosum HOM05D000216 ORTHO05D000634 6.1e-75 284.6 218 67.9
EL10As12g24016 Beta vulgaris HOM05D000216 ORTHO05D001131 7.9e-75 284.3 219 67.1
BNapus_Darmor_BZH_scaffold_253p00060 Brassica napus HOM05D000216 ORTHO05D000634 1.8e-74 283.1 245 62.0
BraSC58t46405Z Brassica rapa HOM05D000216 ORTHO05D000634 1.8e-74 283.1 245 62.0
ATCG00170 Arabidopsis thaliana HOM05D000216 ORTHO05D000634 2.3e-74 282.7 223 66.8
PGR111G0086 Punica granatum HOM05D000216 ORTHO05D000634 2.3e-74 282.7 223 68.2
Manes.01G046800 Manihot esculenta HOM05D000216 ORTHO05D000634 1.1e-73 280.4 216 68.1
arahy.Tifrunner.gnm1.ann1.N383GM Arachis hypogaea HOM05D000216 ORTHO05D000634 1.9e-73 279.6 223 65.0
Eucgr.K02695 Eucalyptus grandis HOM05D000216 ORTHO05D000634 2.5e-73 279.3 221 67.9
CAN.G612.1 Capsicum annuum HOM05D000216 ORTHO05D000634 2.2e-72 276.2 218 67.0
PSO548G0073 Papaver somniferum HOM05D000216 ORTHO05D000634 1.8e-71 273.1 221 65.2
Hund03956 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.7e-69 266.5 216 64.4
Hund25862 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.7e-69 266.5 216 64.4
Hund27560 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.7e-69 266.5 216 64.4
Hund27610 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.7e-69 266.5 216 64.4
Hund27866 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.7e-69 266.5 216 64.4
Hund27996 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.7e-69 266.5 216 64.4
Hund28277 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.7e-69 266.5 216 64.4
Hund28387 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.7e-69 266.5 216 64.4
Hund28559 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.7e-69 266.5 216 64.4
Hund28793 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.7e-69 266.5 216 64.4
Hund29352 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.7e-69 266.5 216 64.4
Hund29740 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.7e-69 266.5 216 64.4
unitig_91.g26496 Utricularia gibba HOM05D000216 ORTHO05D000634 8.5e-69 264.2 221 64.3
BraSC140t45598Z Brassica rapa HOM05D000216 ORTHO05D000634 3.2e-68 262.3 233 60.5
CiPaw.12G031000 Carya illinoinensis HOM05D000216 ORTHO05D000634 4.2e-68 261.9 224 63.4
Zm00001eb314280 Zea mays HOM05D000216 ORTHO05D000634 4.2e-68 261.9 220 61.8
Zm00001eb435270 Zea mays HOM05D000216 ORTHO05D000634 4.2e-68 261.9 220 61.8
Zm00001eb435480 Zea mays HOM05D000216 ORTHO05D000634 4.2e-68 261.9 220 61.8
Zm00001eb436830 Zea mays HOM05D000216 ORTHO05D000634 4.2e-68 261.9 220 61.8
Zm00001eb437260 Zea mays HOM05D000216 ORTHO05D000634 4.2e-68 261.9 220 61.8
ATR0187G001 Amborella trichopoda HOM05D000216 ORTHO05D000634 1.6e-67 260.0 223 62.8
Medtr0002s0510 Medicago truncatula HOM05D000216 ORTHO05D001131 2.3e-66 256.1 220 62.3
LjContig00489g0015528 Lotus japonicus HOM05D000216 ORTHO05D000634 2.5e-65 252.7 219 63.0
Medtr7g069560 Medicago truncatula HOM05D000216 ORTHO05D000634 2.5e-65 252.7 221 62.9
Sed0000813 Sechium edule HOM05D000216 ORTHO05D000634 1.7e-64 250.0 198 67.7
Gohir.D12G094332 Gossypium hirsutum HOM05D000216 ORTHO05D000634 1.4e-60 236.9 196 63.3
Solyc00g500052.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.4e-58 230.3 177 67.8
Solyc00g500135.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.4e-58 230.3 177 67.8
Solyc00g500205.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.4e-58 230.3 177 67.8
Solyc00g500319.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.4e-58 230.3 177 67.8
Peaxi162Scf00379g00084 Petunia axillaris HOM05D000216 ORTHO05D000634 3.9e-58 228.8 170 69.4
Gohir.D01G206650 Gossypium hirsutum HOM05D000216 ORTHO05D000634 6.7e-58 228.0 189 65.6
CAN.G939.13 Capsicum annuum HOM05D000216 ORTHO05D000634 8.8e-58 227.6 177 66.7
Psat5g134640 Pisum sativum HOM05D000216 ORTHO05D000634 1.1e-57 227.3 160 73.8
Gorai.008G102500 Gossypium raimondii HOM05D000216 ORTHO05D000634 2.0e-57 226.5 191 63.9
Lsat_1_v5_gn_1_6760 Lactuca sativa HOM05D003214 ORTHO05D004330 2.6e-57 226.1 177 66.7
CDE07G0287 Ceratophyllum demersum HOM05D003429 ORTHO05D003873 1.1e-55 220.7 237 54.0
Sed0017787 Sechium edule HOM05D000216 ORTHO05D000634 1.6e-54 216.9 200 61.0
Nitab4.5_0001761g0220 Nicotiana tabacum HOM05D000216 ORTHO05D000634 2.0e-54 216.5 136 77.9
BolSC45t60937H Brassica oleracea HOM05D000216 ORTHO05D000634 7.7e-54 214.5 203 57.1
SabraPtG0001000 Salix brachista HOM05D000216 ORTHO05D000634 1.2e-51 207.2 156 67.9
Ah.10g028500 Amaranthus hybridus HOM05D000216 ORTHO05D000634 3.6e-51 205.7 177 60.5
vmacro22403 Vaccinium macrocarpon HOM05D000216 ORTHO05D000634 3.6e-51 205.7 159 65.4
Ah.10g027600 Amaranthus hybridus HOM05D000216 ORTHO05D000634 1.8e-50 203.4 177 59.9
Ah.10g027800 Amaranthus hybridus HOM05D000216 ORTHO05D000634 1.8e-50 203.4 177 59.9
CsaV3_UNG207810 Cucumis sativus L. HOM05D000216 ORTHO05D000634 1.8e-50 203.4 156 69.2
SGA_v2.0_scaffold119G32689 Striga asiatica HOM05D000216 ORTHO05D000634 1.1e-49 200.7 162 64.8
SGA_v2.0_scaffold477G52216 Striga asiatica HOM05D000216 ORTHO05D000634 5.7e-49 198.4 176 61.4
RhsimPtG0004600 Rhododendron simsii HOM05D000743 ORTHO05D000580 1.3e-48 197.2 154 65.6
SalBow1G4778 Salvia bowleyana HOM05D000216 ORTHO05D001131 2.8e-48 196.1 157 64.3
Sc07g0006590 Simmondsia chinensis HOM05D000216 ORTHO05D000634 2.8e-48 196.1 154 66.9
Hund27917 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.1e-47 192.6 156 64.1
AUR62030122 Chenopodium quinoa HOM05D000216 ORTHO05D000634 5.3e-47 191.8 156 64.1
Psat4g062520 Pisum sativum HOM05D000216 ORTHO05D003518 5.3e-47 191.8 163 64.4
Lj1g0027665 Lotus japonicus HOM05D000216 ORTHO05D000634 4.5e-46 188.7 165 60.6
Glyma.02G221400 Glycine max HOM05D000216 ORTHO05D000634 1.0e-45 187.6 162 58.6
Sed0025233 Sechium edule HOM05D000216 ORTHO05D001131 9.4e-44 181.0 143 67.1
Hund15943 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.2e-43 180.6 184 56.5
Lj2C1239G21 Lonicera japonica HOM05D000216 ORTHO05D000634 5.2e-42 175.3 141 66.7
CAN.G511.9 Capsicum annuum HOM05D000216 ORTHO05D000634 1.7e-40 170.2 141 61.7
Atru.chr6.1615 Acer truncatum HOM05D000216 ORTHO05D000634 2.7e-38 162.9 109 71.6
EL10Ac3g05558 Beta vulgaris HOM05D000216 ORTHO05D000634 1.9e-36 156.8 148 58.8
HanXRQChr14g0454991 Helianthus annuus HOM05D000216 ORTHO05D000634 1.6e-35 153.7 141 58.9
Gohir.D08G199601 Gossypium hirsutum HOM05D000216 ORTHO05D000634 6.8e-34 148.3 111 67.6
Solyc08g028910.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.2e-33 147.5 106 68.9
Gorai.004G210400 Gossypium raimondii HOM05D000216 ORTHO05D000634 2.0e-33 146.7 109 67.9
Gorai.013G017900 Gossypium raimondii HOM05D000216 ORTHO05D000634 4.4e-33 145.6 86 80.2
SGA_v2.0_scaffold132G34498 Striga asiatica HOM05D000216 ORTHO05D000634 5.7e-33 145.2 108 68.5
HanXRQChr00c0988g0578131 Helianthus annuus HOM05D000216 ORTHO05D000634 9.8e-33 144.4 135 54.8
Gohir.A05G086066 Gossypium hirsutum HOM05D000216 ORTHO05D000634 1.1e-31 141.0 86 79.1
Hund04025 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.1e-31 141.0 143 53.1
Migut.K00966 Erythranthe guttata HOM05D000216 ORTHO05D000634 5.4e-31 138.7 108 63.9
Migut.F01072 Erythranthe guttata HOM05D000216 ORTHO05D000634 2.0e-30 136.7 102 68.6
Lj2C1239T72 Lonicera japonica HOM05D000216 ORTHO05D000634 3.5e-30 136.0 192 43.8
AUR62021208 Chenopodium quinoa HOM05D000216 ORTHO05D000634 7.7e-30 134.8 84 81.0
HanXRQChr00c0313g0573461 Helianthus annuus HOM05D000216 ORTHO05D000634 7.7e-30 134.8 86 75.6
Oeu010681.1 Olea europaea HOM05D000216 ORTHO05D000634 1.0e-29 134.4 150 50.7
Lsat_1_v5_gn_4_51820 Lactuca sativa HOM05D000216 ORTHO05D009870 1.3e-29 134.0 86 76.7
Migut.D01340 Erythranthe guttata HOM05D000216 ORTHO05D000634 1.7e-29 133.7 120 62.5
Hund12594 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.7e-29 133.7 143 51.7
AUR62030170 Chenopodium quinoa HOM05D000216 ORTHO05D000634 2.3e-29 133.3 84 79.8
QL93p0837_0001 Quercus lobata HOM05D000216 ORTHO05D000634 3.8e-29 132.5 86 75.6
Lalb_Chr06g0173101 Lupinus albus HOM05D000216 ORTHO05D000634 5.0e-29 132.1 85 74.1
Sc11g0005800 Simmondsia chinensis HOM05D000216 ORTHO05D000634 6.6e-29 131.7 84 79.8
TPR.G26480 Trifolium pratense HOM05D000216 ORTHO05D000634 2.1e-27 126.7 69 82.6
Gohir.D03G089666 Gossypium hirsutum HOM05D000216 ORTHO05D000634 6.1e-27 125.2 110 56.4
Lsat_1_v5_gn_3_118000 Lactuca sativa HOM05D000216 ORTHO05D000634 8.0e-27 124.8 109 58.7
Gorai.003G071700 Gossypium raimondii HOM05D000216 ORTHO05D000634 3.0e-26 122.9 116 54.3
Gohir.A07G183950 Gossypium hirsutum HOM05D000216 ORTHO05D000634 4.0e-26 122.5 94 63.8
AUR62042525 Chenopodium quinoa HOM05D000216 ORTHO05D000580 6.8e-26 121.7 156 48.1
Lalb_Chr23g0274571 Lupinus albus HOM05D000216 ORTHO05D000634 5.7e-25 118.6 74 74.3
Oeu012802.1 Olea europaea HOM05D000216 ORTHO05D000634 5.7e-25 118.6 83 74.7
CAN.G213.14 Capsicum annuum HOM05D000216 ORTHO05D000634 7.5e-25 118.2 74 74.3
Migut.D01414 Erythranthe guttata HOM05D000216 ORTHO05D000634 1.3e-24 117.5 74 79.7
Gorai.002G075300 Gossypium raimondii HOM05D000216 ORTHO05D000634 1.6e-22 110.5 75 72.0
HanXRQChr00c0823g0577631 Helianthus annuus HOM05D000216 ORTHO05D000634 2.3e-21 106.7 66 74.2
HanXRQChr07g0188321 Helianthus annuus HOM05D000216 ORTHO05D000634 3.9e-21 105.9 68 70.6
HanXRQChr00c0300g0573181 Helianthus annuus HOM05D000216 ORTHO05D000634 1.5e-20 104.0 108 58.3
Gorai.013G018800 Gossypium raimondii HOM05D000216 ORTHO05D000634 2.5e-20 103.2 102 55.9
Gohir.D13G016950 Gossypium hirsutum HOM05D000216 ORTHO05D000634 5.6e-20 102.1 102 54.9
SMO086G0013 Selaginella moellendorffii HOM05D000216 ORTHO05D000634 8.9e-18 94.7 206 31.6
Lalb_Chr13g0292901 Lupinus albus HOM05D000216 ORTHO05D000634 4.4e-17 92.4 84 58.3
GSVIVG01030958001 Vitis vinifera HOM05D000216 ORTHO05D000634 2.2e-16 90.1 70 64.3
Nitab4.5_0016036g0020 Nicotiana tabacum HOM05D000216 ORTHO05D000634 2.9e-16 89.7 72 69.4
arahy.Tifrunner.gnm1.ann1.8W122S Arachis hypogaea HOM05D000216 ORTHO05D000634 1.1e-15 87.8 85 50.6
Solyc04g018250.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 3.2e-15 86.3 79 60.8
MELO3C001268.2 Cucumis melo HOM05D000216 ORTHO05D000634 4.1e-15 85.9 51 84.3
MELO3C028015.2 Cucumis melo HOM05D000216 ORTHO05D000634 4.1e-15 85.9 51 84.3
Solyc05g020010.1 Solanum lycopersicum HOM05D000388 ORTHO05D000473 4.1e-15 85.9 68 66.2
Solyc12g062650.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 5.4e-15 85.5 74 62.2
MELO3C028016.2 Cucumis melo HOM05D000216 ORTHO05D000634 4.6e-14 82.4 51 82.4
arahy.Tifrunner.gnm1.ann1.EI2YTD Arachis hypogaea HOM05D000890 ORTHO05D000697 1.7e-13 80.5 48 75.0
Pp3c7_4990 Physcomitrium patens HOM05D000216 ORTHO05D000634 1.7e-13 80.5 80 46.2
Lalb_Chr06g0173001 Lupinus albus HOM05D000216 ORTHO05D000634 2.3e-13 80.1 53 71.7
Medtr3g035000 Medicago truncatula HOM05D000079 ORTHO05D004075 2.3e-13 80.1 39 94.9
Gohir.D10G123250 Gossypium hirsutum HOM05D000216 ORTHO05D000634 6.6e-13 78.6 56 67.9
Solyc07g021290.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.5e-12 77.4 48 72.9
Gorai.011G135800 Gossypium raimondii HOM05D000216 ORTHO05D000634 3.6e-11 72.8 56 64.3
AUR62041877 Chenopodium quinoa HOM05D000216 ORTHO05D000634 1.5e-09 67.4 126 37.3
CAN.G100.42 Capsicum annuum HOM05D000216 ORTHO05D000634 1.3e-08 64.3 43 72.1
HanXRQChr14g0436641 Helianthus annuus HOM05D000216 ORTHO05D000634 1.9e-07 60.5 61 47.5
Medtr3g111240 Medicago truncatula HOM05D000216 ORTHO05D000634 4.1e-07 59.3 52 53.8
Nitab4.5_0004184g0070 Nicotiana tabacum HOM05D000216 ORTHO05D000634 7.1e-07 58.5 83 42.2
HPP92_016025 Vanilla planifolia HOM05D000216 ORTHO05D000634 1.6e-06 57.4 42 66.7
SEGI_15522 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 2.7e-06 56.6 53 54.7
Lalb_Chr07g0192701 Lupinus albus HOM05D000216 ORTHO05D000634 6.0e-06 55.5 42 71.4


User provided reference genes

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