Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g081260 Medicago truncatula HOM05D004863 ORTHO05D005802 1.0e-190 669.8 330 100.0
Medtr5g083120 Medicago truncatula HOM05D004863 ORTHO05D005802 4.6e-122 441.8 349 67.9
Psat2g030120 Pisum sativum HOM05D004863 ORTHO05D005802 5.8e-101 371.7 354 61.6
Ca_05983_v3 Cicer arietinum L. HOM05D004863 ORTHO05D005802 6.7e-97 358.2 362 59.4
Ca_05985_v3 Cicer arietinum L. HOM05D004863 ORTHO05D005802 6.7e-97 358.2 362 59.4
TPR.G38454 Trifolium pratense HOM05D004863 ORTHO05D005802 1.3e-92 344.0 361 56.8
TPR.G25338 Trifolium pratense HOM05D004863 ORTHO05D005802 8.4e-92 341.3 356 58.7
LjContig00357g0010590 Lotus japonicus HOM05D004863 ORTHO05D005802 3.6e-82 309.3 370 51.1
Glyma.14G057200 Glycine max HOM05D004863 ORTHO05D005802 5.7e-80 302.0 360 51.1
Lalb_Chr10g0105231 Lupinus albus HOM05D004863 ORTHO05D005802 2.8e-79 299.7 337 52.2
Phvul.001G192700 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 5.0e-76 288.9 337 51.0
Phvul.008G221700 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 2.5e-75 286.6 365 49.0
VMungo0647G0293 Vigna mungo HOM05D004863 ORTHO05D005802 1.6e-74 283.9 351 50.4
Phvul.007G217900 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 2.6e-72 276.6 365 49.6
arahy.Tifrunner.gnm1.ann1.U87T4F Arachis hypogaea HOM05D004863 ORTHO05D005802 1.8e-65 253.8 367 45.5
arahy.Tifrunner.gnm1.ann1.SVWC8K Arachis hypogaea HOM05D004863 ORTHO05D005802 2.6e-64 250.0 378 44.4
Cfa001286 Carpinus fangiana HOM05D004863 ORTHO05D005802 4.2e-59 232.6 370 42.2
Eucgr.G03083 Eucalyptus grandis HOM05D004863 ORTHO05D005802 4.7e-58 229.2 372 42.7
Potri.008G072300 Populus trichocarpa HOM05D004863 ORTHO05D005802 6.1e-58 228.8 376 43.6
QL08p063631 Quercus lobata HOM05D004863 ORTHO05D005802 3.0e-57 226.5 367 44.1
CiPaw.01G301000 Carya illinoinensis HOM05D004863 ORTHO05D005802 4.0e-57 226.1 372 43.3
Manes.10G009400 Manihot esculenta HOM05D004863 ORTHO05D005802 1.2e-56 224.6 374 43.3
PGR142G2246 Punica granatum HOM05D004863 ORTHO05D005802 8.3e-55 218.4 377 40.1
Dinv21763 Davidia involucrata HOM05D004863 ORTHO05D005802 1.4e-54 217.6 407 39.6
Prupe.2G254800 Prunus persica HOM05D004863 ORTHO05D005802 7.0e-54 215.3 367 40.9
Atru.chr12.77 Acer truncatum HOM05D004863 ORTHO05D005802 4.5e-53 212.6 367 42.2
Ciclev10031002m.g Citrus clementina HOM05D004863 ORTHO05D005802 7.7e-53 211.8 373 41.0
Lj4g0013997 Lotus japonicus HOM05D004863 ORTHO05D005802 1.3e-52 211.1 367 41.4
MD12G1179600 Malus domestica HOM05D004863 ORTHO05D005802 6.5e-52 208.8 369 40.1
Sabra08G0053500 Salix brachista HOM05D004863 ORTHO05D005802 1.5e-51 207.6 358 42.2
Hma1.2p1_3100F.1_g332690 Hydrangea macrophylla HOM05D004863 ORTHO05D005802 4.2e-51 206.1 364 41.2
Sopen06g031290 Solanum pennellii HOM05D004863 ORTHO05D005802 2.3e-49 200.3 377 38.7
Sc10g0002560 Simmondsia chinensis HOM05D004863 ORTHO05D005802 4.0e-49 199.5 381 40.2
CANSAT32G0002 Cannabis sativa HOM05D004863 ORTHO05D005802 1.5e-48 197.6 370 38.9
CANSAT56G0816 Cannabis sativa HOM05D004863 ORTHO05D005802 1.5e-48 197.6 370 38.9
SGA_v2.0_scaffold60G20969 Striga asiatica HOM05D004863 ORTHO05D005802 2.0e-48 197.2 393 37.2
Sed0025167 Sechium edule HOM05D004863 ORTHO05D005802 3.4e-48 196.4 374 38.0
Aqoxy1G01634 Aquilegia oxysepala HOM05D004863 ORTHO05D005802 7.5e-48 195.3 370 39.5
MSTRG.8933 Avicennia marina HOM05D004863 ORTHO05D005802 1.3e-47 194.5 378 38.1
Migut.F00644 Erythranthe guttata HOM05D004863 ORTHO05D005802 1.3e-47 194.5 387 37.7
Aqoxy5G04144 Aquilegia oxysepala HOM05D004863 ORTHO05D005802 2.2e-47 193.7 370 39.2
CAN.G1432.18 Capsicum annuum HOM05D004863 ORTHO05D005802 2.2e-47 193.7 359 38.2
Nitab4.5_0001163g0110 Nicotiana tabacum HOM05D004863 ORTHO05D005802 2.8e-47 193.4 399 36.3
TWI09G1305 Tripterygium wilfordii HOM05D004863 ORTHO05D005802 3.7e-47 193.0 368 39.9
Haze_17264 Corylus avellana HOM05D000087 ORTHO05D000793 4.9e-47 192.6 344 39.5
TAR357G0004 Trochodendron aralioides HOM05D004863 ORTHO05D005802 8.3e-47 191.8 335 42.1
GSVIVG01032766001 Vitis vinifera HOM05D004863 ORTHO05D005802 8.3e-47 191.8 367 38.4
FAN08G0290 Fragaria x ananassa HOM05D004863 ORTHO05D005802 3.8e-44 183.0 352 40.3
Nn2g10959 Nelumbo nucifera HOM05D004863 ORTHO05D005802 1.9e-43 180.6 377 39.3
Nitab4.5_0012306g0020 Nicotiana tabacum HOM05D004863 ORTHO05D005802 1.9e-43 180.6 411 34.5
FvH4_5g35270 Fragaria vesca HOM05D004863 ORTHO05D005802 3.3e-43 179.9 371 38.5
THA.LOC104816534 Tarenaya hassleriana HOM05D004863 ORTHO05D005802 7.2e-43 178.7 377 38.7
SalBow3G1147 Salvia bowleyana HOM05D004863 ORTHO05D005802 9.5e-43 178.3 378 37.8
RcHm_v2.0_Chr0c11g0499371 Rosa chinensis HOM05D004863 ORTHO05D005802 1.6e-42 177.6 358 38.3
RcHm_v2.0_Chr7g0236141 Rosa chinensis HOM05D004863 ORTHO05D005802 1.6e-42 177.6 358 38.3
Cc02_g05730 Coffea canephora HOM05D004863 ORTHO05D005802 2.8e-42 176.8 360 36.7
ECA233G5735 Erigeron canadensis HOM05D000718 ORTHO05D005802 4.7e-42 176.0 378 37.8
FAN04G1688 Fragaria x ananassa HOM05D004863 ORTHO05D005802 4.7e-42 176.0 369 36.9
Glyma.02G263700 Glycine max HOM05D004863 ORTHO05D005802 6.1e-42 175.6 263 43.3
Ah.16g103820 Amaranthus hybridus HOM05D004863 ORTHO05D005802 3.0e-41 173.3 396 36.4
EL10Ac2g04883 Beta vulgaris HOM05D004863 ORTHO05D005802 3.0e-41 173.3 378 36.2
Duzib128G0112 Durio zibethinus HOM05D004863 ORTHO05D005802 3.0e-41 173.3 366 36.9
Actinidia00665 Actinidia chinensis HOM05D004863 ORTHO05D005802 5.2e-41 172.6 345 38.0
Cpa.g.sc19.141 Carica papaya HOM05D004863 ORTHO05D005802 5.2e-41 172.6 389 35.7
AUR62012290 Chenopodium quinoa HOM05D004863 ORTHO05D005802 5.2e-41 172.6 378 35.7
FAN13G2483 Fragaria x ananassa HOM05D004863 ORTHO05D005802 6.8e-41 172.2 371 37.5
CsaV3_5G010370 Cucumis sativus L. HOM05D004863 ORTHO05D005802 1.2e-40 171.4 368 35.3
MELO3C018373.2 Cucumis melo HOM05D004863 ORTHO05D005802 5.7e-40 169.1 368 34.8
FAN18G0869 Fragaria x ananassa HOM05D004863 ORTHO05D005802 7.5e-40 168.7 389 35.5
Ah.16g108070 Amaranthus hybridus HOM05D004863 ORTHO05D005802 1.3e-39 167.9 382 35.6
ECA234G2111 Erigeron canadensis HOM05D004863 ORTHO05D005802 1.3e-39 167.9 359 37.6
COL.COLO4_25779 Corchorus olitorius HOM05D007663 ORTHO05D009455 1.1e-38 164.9 348 36.5
Gohir.D04G070101 Gossypium hirsutum HOM05D004863 ORTHO05D005802 7.8e-37 158.7 332 37.3
Gorai.012G078600 Gossypium raimondii HOM05D004863 ORTHO05D005802 7.8e-37 158.7 332 37.3
PSO017G6293 Papaver somniferum HOM05D004863 ORTHO05D005802 7.8e-37 158.7 370 36.5
PSO170G5836 Papaver somniferum HOM05D004863 ORTHO05D005802 1.7e-36 157.5 376 36.7
Sed0002460 Sechium edule HOM05D004863 ORTHO05D005802 2.3e-36 157.1 321 36.8
EL10Ac8g19300 Beta vulgaris HOM05D004863 ORTHO05D005802 2.9e-36 156.8 427 33.7
Gohir.A05G331501 Gossypium hirsutum HOM05D004863 ORTHO05D005802 2.5e-35 153.7 333 36.0
Thhalv10013002m.g Eutrema salsugineum HOM05D004863 ORTHO05D005802 7.3e-35 152.1 366 34.4
RcHm_v2.0_Chr7g0236461 Rosa chinensis HOM05D004863 ORTHO05D005802 9.5e-35 151.8 325 37.5
RcHm_v2.0_Chr7g0236501 Rosa chinensis HOM05D004863 ORTHO05D005802 9.5e-35 151.8 325 37.5
Aa31LG11G6560 Aethionema arabicum HOM05D004863 ORTHO05D005802 1.2e-34 151.4 394 33.2
Rhsim09G0179600 Rhododendron simsii HOM05D004863 ORTHO05D005802 2.3e-33 147.1 396 33.6
BcaC06g32260 Brassica carinata HOM05D004863 ORTHO05D005297 1.2e-32 144.8 361 33.0
ClCG07G004460 Citrullus lanatus HOM05D004863 ORTHO05D005802 5.8e-32 142.5 316 35.4
HPP92_003692 Vanilla planifolia HOM05D004863 ORTHO05D005802 2.9e-31 140.2 305 36.7
A10p30780 Brassica napus HOM05D004863 ORTHO05D005297 4.9e-31 139.4 361 32.7
Sp6g37360 Schrenkiella parvula HOM05D004863 ORTHO05D005802 1.9e-30 137.5 362 33.4
BraA10t45119Z Brassica rapa HOM05D004863 ORTHO05D005297 4.1e-30 136.3 362 32.0
C09p71270 Brassica napus HOM05D004863 ORTHO05D005297 5.4e-30 136.0 365 32.1
BolC9t59888H Brassica oleracea HOM05D004863 ORTHO05D005802 5.4e-30 136.0 365 32.1
AUR62022930 Chenopodium quinoa HOM05D004863 ORTHO05D005802 7.0e-30 135.6 320 36.2
AL6G15380 Arabidopsis lyrata HOM05D004863 ORTHO05D005802 1.6e-29 134.4 366 34.4
AT5G05490 Arabidopsis thaliana HOM05D004863 ORTHO05D005802 1.6e-29 134.4 369 35.2
CARHR207780 Cardamine hirsuta HOM05D004863 ORTHO05D005802 1.6e-29 134.4 371 34.0
Carub.0006s0439 Capsella rubella HOM05D004863 ORTHO05D005802 1.0e-28 131.7 366 34.2
Actinidia00966 Actinidia chinensis HOM05D004863 ORTHO05D005802 1.5e-27 127.9 117 52.1
RcHm_v2.0_Chr0c11g0499581 Rosa chinensis HOM05D004863 ORTHO05D005802 1.5e-24 117.9 184 42.4
TAR362G0045 Trochodendron aralioides HOM05D004863 ORTHO05D005802 7.5e-24 115.5 189 45.5
Peaxi162Scf00114g01014 Petunia axillaris HOM05D004863 ORTHO05D005802 3.7e-23 113.2 284 31.7
Solyc06g074870.3 Solanum lycopersicum HOM05D004863 ORTHO05D005802 1.9e-22 110.9 109 47.7
CDE09G0264 Ceratophyllum demersum HOM05D004863 ORTHO05D005802 2.4e-22 110.5 174 43.7
MBI03_g10782_MAGBIO Magnolia biondii HOM05D004863 ORTHO05D005802 2.4e-22 110.5 328 33.8
CAN.G1001.50 Capsicum annuum HOM05D004863 ORTHO05D005802 7.8e-21 105.5 102 56.9
unitig_46.g18609 Utricularia gibba HOM05D004863 ORTHO05D005802 7.8e-21 105.5 172 43.6
DCAR_011837 Daucus carota HOM05D004863 ORTHO05D001062 6.6e-20 102.4 293 32.1
RcHm_v2.0_Chr7g0230591 Rosa chinensis HOM05D004863 ORTHO05D005802 6.6e-20 102.4 96 56.2
HanXRQChr08g0221801 Helianthus annuus HOM05D004863 ORTHO05D005802 6.2e-18 95.9 127 47.2
RcHm_v2.0_Chr7g0231161 Rosa chinensis HOM05D004863 ORTHO05D005802 8.1e-18 95.5 109 49.5
SEGI_17620 Sequoiadendron giganteum HOM05D004863 ORTHO05D005802 4.0e-17 93.2 331 26.9
Thecc.10G012000 Theobroma cacao HOM05D004863 ORTHO05D005802 5.8e-16 89.4 80 56.2
RcHm_v2.0_Chr7g0236431 Rosa chinensis HOM05D004863 ORTHO05D005802 1.3e-15 88.2 96 49.0
RcHm_v2.0_Chr5g0049701 Rosa chinensis HOM05D004863 ORTHO05D005802 4.9e-15 86.3 69 60.9
PSO063G7659 Papaver somniferum HOM05D004863 ORTHO05D005802 1.1e-14 85.1 98 54.1
ATR0174G036 Amborella trichopoda HOM05D004863 ORTHO05D005802 1.2e-13 81.6 359 26.2
SMO142G0069 Selaginella moellendorffii HOM05D004863 ORTHO05D005802 2.3e-12 77.4 341 27.6
PSO063G5055 Papaver somniferum HOM05D003057 ORTHO05D003904 3.0e-12 77.0 113 40.7
RcHm_v2.0_Chr5g0049691 Rosa chinensis HOM05D004863 ORTHO05D005802 3.0e-12 77.0 104 43.3
RcHm_v2.0_Chr7g0230601 Rosa chinensis HOM05D004863 ORTHO05D005802 3.0e-12 77.0 104 43.3
PSO478G0733 Papaver somniferum HOM05D000294 ORTHO05D000177 6.6e-12 75.9 102 42.2
PSO170G4809 Papaver somniferum HOM05D003057 ORTHO05D003904 7.3e-11 72.4 90 43.3
PSO339G1811 Papaver somniferum HOM05D000294 ORTHO05D000177 7.3e-11 72.4 90 43.3
PSO832G1972 Papaver somniferum HOM05D000294 ORTHO05D000177 7.3e-11 72.4 90 43.3
PSO832G3441 Papaver somniferum HOM05D000294 ORTHO05D000177 7.3e-11 72.4 90 43.3
PSO017G2966 Papaver somniferum HOM05D004863 ORTHO05D005802 1.2e-10 71.6 117 36.8
PSO170G1093 Papaver somniferum HOM05D004863 ORTHO05D005802 2.4e-09 67.4 119 37.0
Oeu041939.1 Olea europaea HOM05D004863 ORTHO05D005802 2.2e-07 60.8 53 50.9
Pp3c3_26738 Physcomitrium patens HOM05D004863 ORTHO05D005802 3.2e-06 57.0 163 31.9
Pp3c6_2600 Physcomitrium patens HOM05D001331 ORTHO05D001157 7.1e-06 55.8 48 56.2


User provided reference genes

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