Gene: AT5G05490

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G05490
  • Transcript Identifier AT5G05490.1
  • Gene Type Coding gene
  • Location Chr5 : 1624325-1629144 : positive

Gene Family Information

  • ID HOM05D004863
  • #Genes/#Species 152/92
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G05490.1
  • symbol SYN1
  • Alias AtREC8,DIF1,DETERMINATE, INFERTILE 1,REC8
  • full_name SYNAPTIC 1
  • uniprot Q9S7T7

Descriptions

  • Description Rad21/Rec8-like family protein
  • Computational description SYNAPTIC 1 (SYN1); CONTAINS InterPro DOMAIN/s: Rad21/Rec8 like protein, C-terminal (InterPro:IPR006909), Rad21/Rec8 like protein, N-terminal (InterPro:IPR006910); BEST Arabidopsis thaliana protein match is: sister chromatid cohesion 1 protein 4 (TAIR:AT5G16270.1); Has 648 Blast hits to 629 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 226; Fungi - 209; Plants - 165; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0007062
IEA
GOA Databasesister chromatid cohesion
GO:0007062
IMP
Gene Ontologysister chromatid cohesion1
GO:0007062
IEA
InterProsister chromatid cohesion
GO:0051321
IEA
GOA Databasemeiotic cell cycle
GO:0007059
IEA
GOA Databasechromosome segregation
GO:0007049
IEA
GOA Databasecell cycle
GO:0007064
IBA
Gene Ontologymitotic sister chromatid cohesion2
GO:0007130
IBA
Gene Ontologysynaptonemal complex assembly2
GO:1990414
IBA
Gene Ontologyreplication-born double-strand break repair via sister chromatid exchange2
GO:0051754
IMP
Gene Ontologymeiotic sister chromatid cohesion, centromeric3
GO:0051455
IMP
Gene Ontologymonopolar spindle attachment to meiosis I kinetochore3
GO:0051276
IMP
Gene Ontologychromosome organization3
GO:0010032
IMP
Gene Ontologymeiotic chromosome condensation1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0003682
IBA
Gene Ontologychromatin binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000795
IBA
Gene Ontologysynaptonemal complex2
GO:0008278
IEA
GOA Databasecohesin complex
GO:0008278
ISS
Gene Ontologycohesin complex4
GO:0008278
IEA
InterProcohesin complex
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0034990
IBA
Gene Ontologynuclear mitotic cohesin complex2
GO:0034991
IBA
Gene Ontologynuclear meiotic cohesin complex2
GO:0005694
IDA
Gene Ontologychromosome3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006910 Rad21/Rec8-like protein, N-terminal
IPR036390 Winged helix DNA-binding domain superfamily
IPR006909 Rad21/Rec8-like protein, C-terminal, eukaryotic
IPR023093 ScpA-like, C-terminal
IPR039781 Rad21/Rec8-like protein
Mapman id Description
13.3.4.1.4 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.meiotic-specific Kleisin-type component SYN1