Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g066740 Medicago truncatula HOM05D001366 ORTHO05D005449 1.6e-58 229.2 113 100.0
FvH4_5g34180 Fragaria vesca HOM05D001366 ORTHO05D005449 1.5e-48 196.1 107 86.9
FAN18G2982 Fragaria x ananassa HOM05D001366 ORTHO05D005449 1.5e-48 196.1 107 86.9
Medtr7g005540 Medicago truncatula HOM05D001366 ORTHO05D005449 1.5e-48 196.1 107 86.9
Potri.005G151700 Populus trichocarpa HOM05D001366 ORTHO05D005449 2.0e-48 195.7 107 86.9
Glyma.02G216100 Glycine max HOM05D001366 ORTHO05D005449 2.6e-48 195.3 107 86.9
LjContig00408g0006754 Lotus japonicus HOM05D001366 ORTHO05D005449 2.6e-48 195.3 107 86.9
Phvul.008G183300 Phaseolus vulgaris HOM05D001366 ORTHO05D005449 2.6e-48 195.3 107 86.9
TPR.G38776 Trifolium pratense HOM05D001366 ORTHO05D005449 3.3e-48 194.9 107 86.9
TPR.G15622 Trifolium pratense HOM05D001366 ORTHO05D005449 7.5e-48 193.7 104 87.5
FAN04G2369 Fragaria x ananassa HOM05D001366 ORTHO05D005449 9.7e-48 193.4 107 85.0
Psat2g064960 Pisum sativum HOM05D001366 ORTHO05D005449 9.7e-48 193.4 107 86.0
Glyma.14G183100 Glycine max HOM05D001366 ORTHO05D005449 1.3e-47 193.0 107 86.9
Prupe.1G536300 Prunus persica HOM05D001366 ORTHO05D005449 1.3e-47 193.0 107 86.0
RcHm_v2.0_Chr7g0233761 Rosa chinensis HOM05D001366 ORTHO05D005449 1.7e-47 192.6 107 85.0
Atru.chr11.619 Acer truncatum HOM05D001366 ORTHO05D005449 2.2e-47 192.2 107 86.0
Lalb_Chr23g0269931 Lupinus albus HOM05D001366 ORTHO05D005449 2.2e-47 192.2 107 86.0
CARHR231830 Cardamine hirsuta HOM05D001366 ORTHO05D005449 2.8e-47 191.8 107 84.1
Manes.18G057000 Manihot esculenta HOM05D001366 ORTHO05D005449 2.8e-47 191.8 107 85.0
Ciclev10002917m.g Citrus clementina HOM05D001366 ORTHO05D005449 3.7e-47 191.4 107 85.0
Cpa.g.sc21.43 Carica papaya HOM05D001366 ORTHO05D005449 4.8e-47 191.0 107 84.1
GSVIVG01009213001 Vitis vinifera HOM05D001366 ORTHO05D005449 4.8e-47 191.0 107 84.1
Lalb_Chr11g0064851 Lupinus albus HOM05D001366 ORTHO05D005449 6.3e-47 190.7 107 85.0
Nn1g05642 Nelumbo nucifera HOM05D001366 ORTHO05D005449 1.1e-46 189.9 107 84.1
Aa31LG4G9540 Aethionema arabicum HOM05D001366 ORTHO05D005449 1.4e-46 189.5 107 83.2
Carub.0007s1663 Capsella rubella HOM05D001366 ORTHO05D005449 1.4e-46 189.5 107 83.2
PSO761G0276 Papaver somniferum HOM05D001366 ORTHO05D005449 1.4e-46 189.5 107 84.1
Aqoxy2G03242 Aquilegia oxysepala HOM05D001366 ORTHO05D005449 1.8e-46 189.1 107 83.2
PSO832G3977 Papaver somniferum HOM05D001366 ORTHO05D005449 1.8e-46 189.1 107 85.0
Sed0015347 Sechium edule HOM05D001366 ORTHO05D005449 1.8e-46 189.1 107 82.2
CANSAT25G2801 Cannabis sativa HOM05D001366 ORTHO05D005449 2.4e-46 188.7 107 83.2
Lalb_Chr08g0242611 Lupinus albus HOM05D001366 ORTHO05D005449 2.4e-46 188.7 107 84.1
PSO013G0324 Papaver somniferum HOM05D001366 ORTHO05D005449 2.4e-46 188.7 107 84.1
TWI09G0135 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 2.4e-46 188.7 107 83.2
Atru.chr13.973 Acer truncatum HOM05D001366 ORTHO05D005449 3.1e-46 188.3 107 83.2
AL7G28780 Arabidopsis lyrata HOM05D001366 ORTHO05D005449 3.1e-46 188.3 107 82.2
AT4G24440 Arabidopsis thaliana HOM05D001366 ORTHO05D005449 3.1e-46 188.3 107 82.2
CsaV3_2G033370 Cucumis sativus L. HOM05D001366 ORTHO05D005449 3.1e-46 188.3 107 81.3
Thhalv10026637m.g Eutrema salsugineum HOM05D001366 ORTHO05D005449 3.1e-46 188.3 107 82.2
Sp7g22400 Schrenkiella parvula HOM05D001366 ORTHO05D005449 3.1e-46 188.3 107 82.2
BcaC06g32884 Brassica carinata HOM05D001366 ORTHO05D005449 4.1e-46 188.0 107 82.2
BolC7t45851H Brassica oleracea HOM05D001366 ORTHO05D005449 4.1e-46 188.0 107 82.2
ClCG11G014700 Citrullus lanatus HOM05D001366 ORTHO05D005449 4.1e-46 188.0 107 82.2
Gorai.009G278800 Gossypium raimondii HOM05D001366 ORTHO05D005449 4.1e-46 188.0 107 83.2
MBI19_g32700_MAGBIO Magnolia biondii HOM05D001366 ORTHO05D005449 4.1e-46 188.0 107 83.2
Rhsim07G0213700 Rhododendron simsii HOM05D001366 ORTHO05D005449 4.1e-46 188.0 107 83.2
Sed0016266 Sechium edule HOM05D001366 ORTHO05D005449 4.1e-46 188.0 107 81.3
Aqoxy6G00666 Aquilegia oxysepala HOM05D001366 ORTHO05D005449 5.3e-46 187.6 107 81.3
arahy.Tifrunner.gnm1.ann1.8785AP Arachis hypogaea HOM05D001366 ORTHO05D005449 5.3e-46 187.6 107 83.2
arahy.Tifrunner.gnm1.ann1.CRNC3Y Arachis hypogaea HOM05D001366 ORTHO05D005449 5.3e-46 187.6 107 83.2
A03p55290 Brassica napus HOM05D001366 ORTHO05D005449 5.3e-46 187.6 110 79.1
BraA03t14588Z Brassica rapa HOM05D001366 ORTHO05D005449 5.3e-46 187.6 110 79.1
COL.COLO4_35286 Corchorus olitorius HOM05D001366 ORTHO05D005449 5.3e-46 187.6 107 83.2
PSO700G0345 Papaver somniferum HOM05D001366 ORTHO05D005449 5.3e-46 187.6 107 83.2
PGR042G3224 Punica granatum HOM05D001366 ORTHO05D005449 5.3e-46 187.6 107 82.2
THA.LOC104815469 Tarenaya hassleriana HOM05D001366 ORTHO05D005449 5.3e-46 187.6 107 82.2
BcaC09g50868 Brassica carinata HOM05D001366 ORTHO05D003220 9.1e-46 186.8 106 81.1
BcaNung05637 Brassica carinata HOM05D001366 ORTHO05D005449 9.1e-46 186.8 107 81.3
C01p19760 Brassica napus HOM05D001366 ORTHO05D003220 9.1e-46 186.8 106 81.1
C07p53590 Brassica napus HOM05D001366 ORTHO05D005449 9.1e-46 186.8 107 81.3
BolC1t01904H Brassica oleracea HOM05D001366 ORTHO05D003220 9.1e-46 186.8 106 81.1
CAN.G1104.8 Capsicum annuum HOM05D001366 ORTHO05D005449 9.1e-46 186.8 107 82.2
CiPaw.08G057200 Carya illinoinensis HOM05D001366 ORTHO05D005449 9.1e-46 186.8 107 82.2
Solyc12g088030.2 Solanum lycopersicum HOM05D001366 ORTHO05D005449 9.1e-46 186.8 107 82.2
Sopen12g030060 Solanum pennellii HOM05D001366 ORTHO05D005449 9.1e-46 186.8 107 82.2
TWI73G1055 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 9.1e-46 186.8 107 82.2
arahy.Tifrunner.gnm1.ann1.HU70H8 Arachis hypogaea HOM05D001366 ORTHO05D005449 1.2e-45 186.4 107 82.2
DCAR_006444 Daucus carota HOM05D001366 ORTHO05D005449 1.2e-45 186.4 107 82.2
A08p21460 Brassica napus HOM05D001366 ORTHO05D005449 1.6e-45 186.0 107 81.3
BolC8t48576H Brassica oleracea HOM05D001366 ORTHO05D005449 1.6e-45 186.0 107 81.3
BraA08t34095Z Brassica rapa HOM05D001366 ORTHO05D005449 1.6e-45 186.0 107 81.3
Gohir.A05G264200 Gossypium hirsutum HOM05D001366 ORTHO05D005449 1.6e-45 186.0 107 82.2
A01p15810 Brassica napus HOM05D001366 ORTHO05D003220 2.0e-45 185.7 104 81.7
BraA01t01516Z Brassica rapa HOM05D001366 ORTHO05D003220 2.0e-45 185.7 104 81.7
Gohir.D05G266700 Gossypium hirsutum HOM05D001366 ORTHO05D005449 2.0e-45 185.7 107 82.2
Hma1.2p1_0125F.1_g058680 Hydrangea macrophylla HOM05D001366 ORTHO05D005449 2.0e-45 185.7 107 81.3
arahy.Tifrunner.gnm1.ann1.T41BVH Arachis hypogaea HOM05D001366 ORTHO05D005449 2.7e-45 185.3 107 82.2
EL10Ac9g20840 Beta vulgaris HOM05D001366 ORTHO05D005449 2.7e-45 185.3 107 82.2
CiPaw.07G162800 Carya illinoinensis HOM05D001366 ORTHO05D005449 2.7e-45 185.3 107 82.2
MELO3C008106.2 Cucumis melo HOM05D001366 ORTHO05D005449 2.7e-45 185.3 107 80.4
Gohir.D05G220900 Gossypium hirsutum HOM05D001366 ORTHO05D005449 2.7e-45 185.3 107 82.2
Gorai.009G228000 Gossypium raimondii HOM05D001366 ORTHO05D005449 2.7e-45 185.3 107 82.2
PGSC0003DMG400002052 Solanum tuberosum HOM05D001366 ORTHO05D005449 2.7e-45 185.3 107 81.3
Actinidia29656 Actinidia chinensis HOM05D001366 ORTHO05D005449 3.5e-45 184.9 107 81.3
EL10Ac8g20405 Beta vulgaris HOM05D001366 ORTHO05D005449 3.5e-45 184.9 107 81.3
Thecc.08G074000 Theobroma cacao HOM05D001366 ORTHO05D005449 4.5e-45 184.5 107 81.3
Ah.01g003970 Amaranthus hybridus HOM05D001366 ORTHO05D005449 5.9e-45 184.1 107 80.4
ATR0691G175 Amborella trichopoda HOM05D001366 ORTHO05D005449 5.9e-45 184.1 107 81.3
CsaV3_2G033350 Cucumis sativus L. HOM05D001366 ORTHO05D005449 5.9e-45 184.1 107 81.3
Haze_22489 Corylus avellana HOM05D001366 ORTHO05D005449 1.3e-44 183.0 107 81.3
Hund07854 Selenicereus undatus HOM05D001366 ORTHO05D005449 1.3e-44 183.0 111 79.3
THA.LOC104799853 Tarenaya hassleriana HOM05D001366 ORTHO05D005449 1.3e-44 183.0 107 80.4
Duzib041G0019 Durio zibethinus HOM05D001366 ORTHO05D005449 1.7e-44 182.6 107 78.5
Eucgr.F00436 Eucalyptus grandis HOM05D001366 ORTHO05D005449 1.7e-44 182.6 107 80.4
Peaxi162Scf00160g00913 Petunia axillaris HOM05D001366 ORTHO05D005449 1.7e-44 182.6 107 81.3
HPP92_010288 Vanilla planifolia HOM05D001366 ORTHO05D005449 1.7e-44 182.6 106 80.2
TAR625G0060 Trochodendron aralioides HOM05D001366 ORTHO05D005449 3.8e-44 181.4 107 80.4
Rhsim02G0071900 Rhododendron simsii HOM05D001366 ORTHO05D005449 6.5e-44 180.6 123 74.0
HanXRQChr10g0277741 Helianthus annuus HOM05D001366 ORTHO05D005449 8.5e-44 180.3 107 78.5
HanXRQChr03g0063191 Helianthus annuus HOM05D001366 ORTHO05D005449 1.1e-43 179.9 108 78.7
Nitab4.5_0000885g0060 Nicotiana tabacum HOM05D001366 ORTHO05D005449 1.1e-43 179.9 107 79.4
Cc10_g08370 Coffea canephora HOM05D001366 ORTHO05D005449 1.5e-43 179.5 107 80.4
Lsat_1_v5_gn_6_107360 Lactuca sativa HOM05D001366 ORTHO05D005449 1.5e-43 179.5 106 77.4
Zm00001eb356100 Zea mays HOM05D001366 ORTHO05D005449 1.5e-43 179.5 107 77.6
CSS0026904 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D005449 1.9e-43 179.1 107 79.4
ECA240G3991 Erigeron canadensis HOM05D001366 ORTHO05D005449 2.5e-43 178.7 107 78.5
Oeu040884.1 Olea europaea HOM05D001366 ORTHO05D005449 3.2e-43 178.3 107 79.4
TWI56G0439 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 5.5e-43 177.6 107 78.5
Gohir.A05G216500 Gossypium hirsutum HOM05D001366 ORTHO05D005449 7.2e-43 177.2 117 75.2
CSS0031876 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D005449 9.4e-43 176.8 107 77.6
Nitab4.5_0000354g0080 Nicotiana tabacum HOM05D001366 ORTHO05D005449 9.4e-43 176.8 107 78.5
Sabra05G0119200 Salix brachista HOM05D001366 ORTHO05D005449 9.4e-43 176.8 133 68.4
MSTRG.5323 Avicennia marina HOM05D001366 ORTHO05D005449 1.2e-42 176.4 107 78.5
Os05g0107700 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D005449 1.2e-42 176.4 107 77.6
Zm00001eb139900 Zea mays HOM05D001366 ORTHO05D005449 2.7e-42 175.3 104 78.8
SalBow3G1925 Salvia bowleyana HOM05D001366 ORTHO05D005449 1.0e-41 173.3 107 79.4
SGA_v2.0_scaffold337G49194 Striga asiatica HOM05D001366 ORTHO05D005449 3.0e-41 171.8 107 77.6
SalBow6G3832 Salvia bowleyana HOM05D001366 ORTHO05D005449 4.0e-41 171.4 107 78.5
SalBow6G5818 Salvia bowleyana HOM05D001366 ORTHO05D005449 4.0e-41 171.4 107 78.5
MSTRG.27758 Avicennia marina HOM05D001366 ORTHO05D005449 5.2e-41 171.0 107 76.6
Migut.N01147 Erythranthe guttata HOM05D001366 ORTHO05D005449 6.8e-41 170.6 107 77.6
Os01g0970500 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D005449 6.8e-41 170.6 104 75.0
unitig_22.g6842 Utricularia gibba HOM05D001366 ORTHO05D005449 1.5e-40 169.5 107 74.8
Psat0s2399g0160 Pisum sativum HOM05D001366 ORTHO05D005449 2.6e-40 168.7 105 73.3
MD08G1203900 Malus domestica HOM05D001366 ORTHO05D005449 9.8e-40 166.8 93 84.9
SHI29728 Sapria himalayana HOM05D001366 ORTHO05D005449 9.8e-40 166.8 107 77.6
MSTRG.16686 Avicennia marina HOM05D001366 ORTHO05D005449 1.3e-39 166.4 106 72.6
SGA_v2.0_scaffold219G42523 Striga asiatica HOM05D001366 ORTHO05D005449 1.7e-39 166.0 104 76.0
Actinidia19254 Actinidia chinensis HOM05D001366 ORTHO05D005449 3.1e-38 161.8 107 71.0
AUR62017035 Chenopodium quinoa HOM05D001366 ORTHO05D005449 4.1e-38 161.4 93 81.7
ECA246G1742 Erigeron canadensis HOM05D001366 ORTHO05D005449 1.3e-36 156.4 98 71.4
TAR381G0322 Trochodendron aralioides HOM05D001366 ORTHO05D005449 1.7e-36 156.0 103 74.8
Mapoly0012s0108 Marchantia polymorpha HOM05D001366 ORTHO05D005449 7.2e-35 150.6 107 62.6
Pp3c15_13540 Physcomitrium patens HOM05D001366 ORTHO05D005449 1.6e-34 149.4 107 64.5
Pp3c9_10830 Physcomitrium patens HOM05D001366 ORTHO05D005449 1.6e-34 149.4 107 65.4
Oeu038169.3 Olea europaea HOM05D001366 ORTHO05D005449 3.6e-34 148.3 165 51.5
AagrBONN_evm.TU.Sc2ySwM_228.3950 Anthoceros agrestis HOM05D001366 ORTHO05D005449 1.0e-33 146.7 107 60.7
AagrBONN_evm.TU.Sc2ySwM_228.5579 Anthoceros agrestis HOM05D001366 ORTHO05D005449 1.4e-33 146.4 107 58.9
Duzib116G0949 Durio zibethinus HOM05D001366 ORTHO05D005449 2.3e-33 145.6 107 68.2
Lsat_1_v5_gn_7_43741 Lactuca sativa HOM05D001366 ORTHO05D005449 5.7e-32 141.0 83 77.1
SMO169G0007 Selaginella moellendorffii HOM05D001366 ORTHO05D005449 1.1e-30 136.7 106 55.7
Actinidia19617 Actinidia chinensis HOM05D001366 ORTHO05D005449 2.7e-29 132.1 71 87.3
RcHm_v2.0_Chr5g0012851 Rosa chinensis HOM05D001366 ORTHO05D005449 1.8e-25 119.4 107 52.3
unitig_8.g3420 Utricularia gibba HOM05D001366 ORTHO05D005449 8.3e-23 110.5 93 58.1
Migut.B00439 Erythranthe guttata HOM05D001366 ORTHO05D005449 1.8e-22 109.4 107 52.3
Haze_27711 Corylus avellana HOM05D001366 ORTHO05D005449 3.2e-22 108.6 100 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1269 Anthoceros agrestis HOM05D001366 ORTHO05D005449 1.6e-21 106.3 105 43.8
Ca_08744_v3 Cicer arietinum L. HOM05D001366 ORTHO05D005449 2.3e-20 102.4 60 81.7
VMungo0647G1399 Vigna mungo HOM05D001366 ORTHO05D005449 2.3e-20 102.4 60 81.7
Dinv42590 Davidia involucrata HOM05D001366 ORTHO05D005449 8.6e-20 100.5 69 69.6
vmacro04625 Vaccinium macrocarpon HOM05D001366 ORTHO05D005449 8.6e-20 100.5 60 80.0
Lsat_1_v5_gn_4_60280 Lactuca sativa HOM05D001366 ORTHO05D005449 4.3e-19 98.2 66 68.2
QL09p018667 Quercus lobata HOM05D001366 ORTHO05D005449 2.1e-18 95.9 60 75.0
BcaC08g43388 Brassica carinata HOM05D001366 ORTHO05D005449 1.2e-16 90.1 84 56.0
C06p07570 Brassica napus HOM05D001366 ORTHO05D005449 2.6e-16 89.0 107 50.5
BolC6t35845H Brassica oleracea HOM05D001366 ORTHO05D005449 2.6e-16 89.0 107 50.5
Mapoly0067s0078 Marchantia polymorpha HOM05D001366 ORTHO05D005449 1.3e-15 86.7 98 42.9
AUR62014838 Chenopodium quinoa HOM05D001366 ORTHO05D005449 7.8e-13 77.4 62 59.7
HanXRQChr05g0143271 Helianthus annuus HOM05D001366 ORTHO05D005449 1.7e-12 76.3 52 65.4
Cre10.g424150 Chlamydomonas reinhardtii HOM05D001366 ORTHO05D005449 1.9e-11 72.8 100 31.0
PRCOL_00001724 Prasinoderma coloniale HOM05D001366 ORTHO05D005449 1.6e-10 69.7 92 32.6
TAR374G0947 Trochodendron aralioides HOM05D000025 ORTHO05D000040 3.4e-08 62.0 34 76.5
Lsat_1_v5_gn_8_150280 Lactuca sativa HOM05D001675 ORTHO05D004161 1.7e-07 59.7 46 56.5
HanXRQChr11g0353851 Helianthus annuus HOM05D001366 ORTHO05D005449 4.1e-06 55.1 36 66.7


User provided reference genes

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