Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g055890 Medicago truncatula HOM05D007086 ORTHO05D008927 3.3e-33 144.4 71 100.0
Glyma.05G239900 Glycine max HOM05D007086 ORTHO05D008927 2.1e-32 141.7 71 95.8
Lalb_Chr05g0222151 Lupinus albus HOM05D007086 ORTHO05D008927 2.8e-32 141.4 71 95.8
Glyma.08G047000 Glycine max HOM05D007086 ORTHO05D008927 6.1e-32 140.2 71 94.4
Lj4g0021147 Lotus japonicus HOM05D007086 ORTHO05D008927 8.0e-32 139.8 71 93.0
Phvul.009G128900 Phaseolus vulgaris HOM05D007086 ORTHO05D008927 1.0e-31 139.4 71 93.0
Phvul.002G322200 Phaseolus vulgaris HOM05D007086 ORTHO05D008927 2.3e-31 138.3 71 90.1
TPR.G38364 Trifolium pratense HOM05D007086 ORTHO05D008927 4.0e-31 137.5 71 93.0
Medtr5g055880 Medicago truncatula HOM05D007086 ORTHO05D008927 1.9e-28 128.6 66 92.4
Potri.001G116000 Populus trichocarpa HOM05D007086 ORTHO05D008927 1.7e-26 122.1 71 81.7
GSVIVG01019940001 Vitis vinifera HOM05D007086 ORTHO05D008927 3.9e-26 120.9 71 77.5
BolC5t29822H Brassica oleracea HOM05D007086 ORTHO05D008927 8.6e-26 119.8 71 77.5
BraA06t24109Z Brassica rapa HOM05D007086 ORTHO05D008927 8.6e-26 119.8 71 77.5
Manes.02G032611 Manihot esculenta HOM05D007086 ORTHO05D008927 1.1e-25 119.4 71 76.1
THA.LOC104809439 Tarenaya hassleriana HOM05D007086 ORTHO05D008927 1.1e-25 119.4 71 78.9
Sp1g11000 Schrenkiella parvula HOM05D007086 ORTHO05D008927 1.5e-25 119.0 71 77.5
Thhalv10009271m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 1.9e-25 118.6 71 76.1
Lj4g0007995 Lotus japonicus HOM05D007086 ORTHO05D008927 4.3e-25 117.5 61 90.2
Cpa.g.sc29.74 Carica papaya HOM05D007086 ORTHO05D008927 5.6e-25 117.1 71 74.6
Os07g0573600 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 5.6e-25 117.1 71 73.2
Sc01g0009150 Simmondsia chinensis HOM05D007086 ORTHO05D008927 9.5e-25 116.3 69 76.8
Aa31LG1G2230 Aethionema arabicum HOM05D007086 ORTHO05D008927 1.2e-24 115.9 71 76.1
Eucgr.E00483 Eucalyptus grandis HOM05D007086 ORTHO05D008927 1.2e-24 115.9 71 73.2
QL12p015352 Quercus lobata HOM05D007086 ORTHO05D008927 1.2e-24 115.9 70 75.7
AL1G23730 Arabidopsis lyrata HOM05D007086 ORTHO05D008927 1.6e-24 115.5 70 75.7
Os05g0198700 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 1.6e-24 115.5 71 71.8
AT1G12400 Arabidopsis thaliana HOM05D007086 ORTHO05D008927 2.1e-24 115.2 70 74.3
Thecc.03G263200 Theobroma cacao HOM05D007086 ORTHO05D008927 2.1e-24 115.2 71 73.2
arahy.Tifrunner.gnm1.ann1.NIEM70 Arachis hypogaea HOM05D007086 ORTHO05D008927 2.8e-24 114.8 69 84.1
BcaB03g13189 Brassica carinata HOM05D007086 ORTHO05D008927 2.8e-24 114.8 71 74.6
arahy.Tifrunner.gnm1.ann1.T092PF Arachis hypogaea HOM05D007086 ORTHO05D008927 3.6e-24 114.4 58 93.1
CANSAT21G1174 Cannabis sativa HOM05D007086 ORTHO05D008927 3.6e-24 114.4 71 70.4
CARHR012690 Cardamine hirsuta HOM05D007086 ORTHO05D008927 3.6e-24 114.4 70 74.3
Duzib084G0284 Durio zibethinus HOM05D007086 ORTHO05D008927 4.7e-24 114.0 71 74.6
Sabra01G0089100 Salix brachista HOM05D007086 ORTHO05D008927 4.7e-24 114.0 71 76.1
Carub.0001s1205 Capsella rubella HOM05D007086 ORTHO05D008927 6.2e-24 113.6 70 72.9
CiPaw.11G146300 Carya illinoinensis HOM05D007086 ORTHO05D008927 1.1e-23 112.8 71 71.8
Nn1g01223 Nelumbo nucifera HOM05D007086 ORTHO05D008927 1.4e-23 112.5 71 71.8
Gohir.A12G221900 Gossypium hirsutum HOM05D007086 ORTHO05D008927 1.8e-23 112.1 71 73.2
Gohir.D12G224400 Gossypium hirsutum HOM05D007086 ORTHO05D008927 1.8e-23 112.1 71 73.2
Gorai.008G240500 Gossypium raimondii HOM05D007086 ORTHO05D008927 1.8e-23 112.1 71 73.2
TWI60G0887 Tripterygium wilfordii HOM05D007086 ORTHO05D008927 1.8e-23 112.1 71 73.2
Cfa012029 Carpinus fangiana HOM05D007086 ORTHO05D008927 2.3e-23 111.7 71 70.4
Potri.009G138800 Populus trichocarpa HOM05D007086 ORTHO05D008927 2.3e-23 111.7 69 75.4
Sed0003691 Sechium edule HOM05D007086 ORTHO05D008927 2.3e-23 111.7 71 70.4
Atru.chr9.1458 Acer truncatum HOM05D007086 ORTHO05D008927 3.1e-23 111.3 71 70.4
BolC8t49170H Brassica oleracea HOM05D007086 ORTHO05D008927 4.0e-23 110.9 71 73.2
CSS0011774 Camellia sinensis var. sinensis HOM05D007086 ORTHO05D008927 5.2e-23 110.5 71 70.4
CSS0048716 Camellia sinensis var. sinensis HOM05D007086 ORTHO05D008927 5.2e-23 110.5 71 70.4
CsaV3_3G003270 Cucumis sativus L. HOM05D007086 ORTHO05D008927 5.2e-23 110.5 71 73.2
MD04G1245800 Malus domestica HOM05D007086 ORTHO05D008927 5.2e-23 110.5 71 70.4
MD12G1192500 Malus domestica HOM05D007086 ORTHO05D008927 5.2e-23 110.5 71 70.4
PGR031G3010 Punica granatum HOM05D007086 ORTHO05D008927 5.2e-23 110.5 71 71.8
CDE11G0364 Ceratophyllum demersum HOM05D007086 ORTHO05D008927 6.8e-23 110.2 69 71.0
Actinidia05249 Actinidia chinensis HOM05D001611 ORTHO05D001464 8.9e-23 109.8 71 71.8
Prupe.5G081100 Prunus persica HOM05D007086 ORTHO05D008927 1.2e-22 109.4 71 67.6
EL10Ac7g17105 Beta vulgaris HOM05D007086 ORTHO05D008927 1.5e-22 109.0 69 69.6
FAN08G0246 Fragaria x ananassa HOM05D007086 ORTHO05D008927 2.0e-22 108.6 71 67.6
PSO478G4385 Papaver somniferum HOM05D007086 ORTHO05D008927 2.0e-22 108.6 71 69.0
Hma1.2p1_0367F.1_g137100 Hydrangea macrophylla HOM05D007086 ORTHO05D008927 2.6e-22 108.2 71 69.0
Hma1.2p1_3825F.1_g337656 Hydrangea macrophylla HOM05D007086 ORTHO05D008927 2.6e-22 108.2 71 69.0
Cc08_g13390 Coffea canephora HOM05D007086 ORTHO05D008927 3.4e-22 107.8 71 71.8
RcHm_v2.0_Chr7g0201071 Rosa chinensis HOM05D007086 ORTHO05D008927 3.4e-22 107.8 71 69.0
ClCG00G001010 Citrullus lanatus HOM05D007086 ORTHO05D008927 4.4e-22 107.5 71 69.0
HanXRQChr02g0046221 Helianthus annuus HOM05D007086 ORTHO05D008927 7.5e-22 106.7 71 71.8
SGA_v2.0_scaffold37G14847 Striga asiatica HOM05D007086 ORTHO05D008927 9.8e-22 106.3 70 70.0
PSO782G0332 Papaver somniferum HOM05D007086 ORTHO05D008927 3.7e-21 104.4 71 66.2
Rhsim07G0100800 Rhododendron simsii HOM05D007086 ORTHO05D008927 3.7e-21 104.4 71 69.0
SalBow6G6939 Salvia bowleyana HOM05D007086 ORTHO05D008927 6.4e-21 103.6 70 67.1
Solyc08g079610.3 Solanum lycopersicum HOM05D007086 ORTHO05D008927 1.1e-20 102.8 71 66.2
Sopen08g027960 Solanum pennellii HOM05D007086 ORTHO05D008927 1.1e-20 102.8 71 66.2
PGSC0003DMG400019087 Solanum tuberosum HOM05D007086 ORTHO05D008927 1.1e-20 102.8 71 66.2
Peaxi162Scf00051g00316 Petunia axillaris HOM05D007086 ORTHO05D008927 3.2e-20 101.3 71 64.8
Peaxi162Scf00078g00627 Petunia axillaris HOM05D007086 ORTHO05D008927 3.2e-20 101.3 71 64.8
PGSC0003DMG400003953 Solanum tuberosum HOM05D007086 ORTHO05D008927 3.2e-20 101.3 71 64.8
MBI12_g10752_MAGBIO Magnolia biondii HOM05D007086 ORTHO05D008927 5.4e-20 100.5 71 69.0
Migut.A00849 Erythranthe guttata HOM05D007086 ORTHO05D008927 1.6e-19 99.0 69 66.7
Migut.I00707 Erythranthe guttata HOM05D007086 ORTHO05D008927 1.6e-19 99.0 69 66.7
Lalb_Chr18g0049811 Lupinus albus HOM05D007086 ORTHO05D008927 2.1e-19 98.6 56 85.7
AagrBONN_evm.TU.Sc2ySwM_362.2353 Anthoceros agrestis HOM05D002603 ORTHO05D008927 3.5e-19 97.8 69 59.4
Aqoxy7G00621 Aquilegia oxysepala HOM05D007086 ORTHO05D008927 4.6e-19 97.4 63 71.4
SGA_v2.0_scaffold511G52628 Striga asiatica HOM05D007086 ORTHO05D008927 4.6e-19 97.4 71 64.8
BraA08t35207Z Brassica rapa HOM05D001611 ORTHO05D001464 2.3e-18 95.1 62 71.0
C08p15410 Brassica napus HOM05D001611 ORTHO05D001464 3.0e-18 94.7 62 71.0
Dinv00491 Davidia involucrata HOM05D007086 ORTHO05D008927 3.0e-18 94.7 71 63.4
AT1G62886 Arabidopsis thaliana HOM05D007086 ORTHO05D008927 5.1e-18 94.0 73 60.3
Mapoly0088s0021 Marchantia polymorpha HOM05D007086 ORTHO05D008927 5.1e-18 94.0 69 58.0
SEGI_31798 Sequoiadendron giganteum HOM05D007086 ORTHO05D008927 6.6e-18 93.6 71 60.6
Ciclev10024015m.g Citrus clementina HOM05D007086 ORTHO05D008927 1.1e-17 92.8 59 71.2
Rhsim02G0196200 Rhododendron simsii HOM05D007086 ORTHO05D008927 1.1e-17 92.8 62 69.4
Rhsim02G0194900 Rhododendron simsii HOM05D007086 ORTHO05D008927 1.5e-17 92.4 64 68.8
AL2G12840 Arabidopsis lyrata HOM05D007086 ORTHO05D008927 2.5e-17 91.7 73 60.3
FAN12G2970 Fragaria x ananassa HOM05D007086 ORTHO05D008927 3.3e-17 91.3 71 60.6
FAN12G3233 Fragaria x ananassa HOM05D007086 ORTHO05D008927 3.3e-17 91.3 71 60.6
MD06G1064000 Malus domestica HOM05D007086 ORTHO05D008927 3.3e-17 91.3 60 71.7
Pp3c1_34050 Physcomitrium patens HOM05D007086 ORTHO05D008927 1.2e-16 89.4 69 52.2
Thhalv10029420m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 1.6e-16 89.0 73 56.2
Nitab4.5_0005241g0010 Nicotiana tabacum HOM05D007086 ORTHO05D008927 1.6e-16 89.0 63 65.1
Carub.0002s0211 Capsella rubella HOM05D007086 ORTHO05D008927 2.1e-16 88.6 68 61.8
MELO3C013994.2 Cucumis melo HOM05D000693 ORTHO05D001102 2.1e-16 88.6 59 67.8
Zm00001eb267070 Zea mays HOM05D007086 ORTHO05D008927 2.8e-16 88.2 59 64.4
CAN.G630.56 Capsicum annuum HOM05D007086 ORTHO05D008927 6.2e-16 87.0 63 65.1
ClCG00G001020 Citrullus lanatus HOM05D000693 ORTHO05D001102 6.2e-16 87.0 59 66.1
FAN18G4230 Fragaria x ananassa HOM05D001611 ORTHO05D001464 6.2e-16 87.0 59 64.4
Prupe.5G081200 Prunus persica HOM05D007086 ORTHO05D008927 6.2e-16 87.0 59 64.4
CARHR048860 Cardamine hirsuta HOM05D007086 ORTHO05D008927 1.4e-15 85.9 74 54.1
TWI77G0094 Tripterygium wilfordii HOM05D007086 ORTHO05D008927 1.8e-15 85.5 56 69.6
Lsat_1_v5_gn_6_9641 Lactuca sativa HOM05D007086 ORTHO05D008927 2.3e-15 85.1 61 68.9
Nitab4.5_0000633g0050 Nicotiana tabacum HOM05D007086 ORTHO05D008927 5.2e-15 84.0 67 61.2
Nitab4.5_0007130g0020 Nicotiana tabacum HOM05D007086 ORTHO05D008927 6.8e-15 83.6 59 66.1
A08p32850 Brassica napus HOM05D001611 ORTHO05D001464 8.9e-15 83.2 52 73.1
Os05g0108500 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 2.6e-14 81.6 61 63.9
CBR_g51826 Chara braunii HOM05D007086 ORTHO05D008927 5.8e-14 80.5 68 50.0
Thhalv10023898m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 2.1e-11 72.0 83 47.0
HPP92_014763 Vanilla planifolia HOM05D007086 ORTHO05D008927 5.6e-09 63.9 40 67.5
Dinv08998 Davidia involucrata HOM05D007086 ORTHO05D008927 2.1e-08 62.0 49 61.2
MCO09G617 Micromonas commoda HOM05D007086 ORTHO05D008927 2.1e-08 62.0 70 35.7


User provided reference genes

Program Settings