Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g102430 Medicago truncatula HOM05D007289 ORTHO05D009215 0.0e+00 1102.8 554 100.0
Psat5g299280 Pisum sativum HOM05D007289 ORTHO05D009215 2.6e-170 602.8 372 82.8
Ca_01106_v3 Cicer arietinum L. HOM05D007289 ORTHO05D009215 1.4e-168 597.0 370 83.5
TPR.G37243 Trifolium pratense HOM05D007289 ORTHO05D009215 3.7e-164 582.4 371 80.9
Glyma.13G360800 Glycine max HOM05D007289 ORTHO05D009215 4.3e-149 532.3 369 75.9
Lj3g0010801 Lotus japonicus HOM05D007289 ORTHO05D009215 7.4e-149 531.6 374 74.1
VMungo1080G1522 Vigna mungo HOM05D007289 ORTHO05D009215 3.0e-142 509.6 371 72.0
Phvul.005G172600 Phaseolus vulgaris HOM05D007289 ORTHO05D009215 5.1e-142 508.8 369 72.4
Lalb_Chr22g0351171 Lupinus albus HOM05D007289 ORTHO05D009215 1.0e-134 484.6 372 68.8
Lalb_Chr14g0373531 Lupinus albus HOM05D007289 ORTHO05D009215 8.8e-134 481.5 370 69.2
arahy.Tifrunner.gnm1.ann1.HRS6MU Arachis hypogaea HOM05D007289 ORTHO05D009215 8.5e-129 464.9 361 67.9
arahy.Tifrunner.gnm1.ann1.UJ7D22 Arachis hypogaea HOM05D007289 ORTHO05D009215 1.4e-128 464.2 361 67.6
Prupe.3G073900 Prunus persica HOM05D007289 ORTHO05D009215 9.4e-112 408.3 362 58.0
MD17G1197800 Malus domestica HOM05D007289 ORTHO05D009215 2.8e-108 396.7 377 56.2
TAR383G0594 Trochodendron aralioides HOM05D007289 ORTHO05D009215 3.1e-107 393.3 385 55.6
Ciclev10025766m.g Citrus clementina HOM05D007289 ORTHO05D009215 2.9e-105 386.7 371 58.0
RcHm_v2.0_Chr2g0137421 Rosa chinensis HOM05D007289 ORTHO05D009215 8.6e-105 385.2 370 55.1
CANSAT56G1700 Cannabis sativa HOM05D007289 ORTHO05D009215 1.2e-103 381.3 383 54.0
FAN02G0535 Fragaria x ananassa HOM05D007289 ORTHO05D009215 1.2e-103 381.3 378 55.0
Dinv30529 Davidia involucrata HOM05D007289 ORTHO05D009215 8.0e-103 378.6 386 54.1
CSS0039074 Camellia sinensis var. sinensis HOM05D007289 ORTHO05D009215 1.4e-102 377.9 391 50.6
FvH4_6g30910 Fragaria vesca HOM05D007289 ORTHO05D009215 6.8e-102 375.6 367 55.3
Aqoxy7G01850 Aquilegia oxysepala HOM05D007289 ORTHO05D009215 1.2e-101 374.8 379 54.4
MELO3C023367.2 Cucumis melo HOM05D007289 ORTHO05D009215 3.2e-99 366.7 373 54.2
Sed0021795 Sechium edule HOM05D007289 ORTHO05D009215 9.2e-99 365.2 369 52.6
Cfa002049 Carpinus fangiana HOM05D007289 ORTHO05D009215 1.2e-98 364.8 376 54.5
PSO782G0119 Papaver somniferum HOM05D007289 ORTHO05D009215 1.6e-98 364.4 363 55.1
CiPaw.02G152300 Carya illinoinensis HOM05D007289 ORTHO05D009215 2.0e-98 364.0 343 56.9
vmacro18934 Vaccinium macrocarpon HOM05D007289 ORTHO05D009215 2.0e-98 364.0 379 52.8
Potri.001G178100 Populus trichocarpa HOM05D007289 ORTHO05D009215 3.5e-98 363.2 357 52.9
MBI04_g26647_MAGBIO Magnolia biondii HOM05D007289 ORTHO05D009215 1.3e-97 361.3 389 50.4
CsaV3_7G033000 Cucumis sativus L. HOM05D007289 ORTHO05D009215 5.0e-97 359.4 378 53.2
Sabra01G0148500 Salix brachista HOM05D007289 ORTHO05D009215 1.5e-96 357.8 358 52.0
DCAR_016227 Daucus carota HOM05D007289 ORTHO05D009215 4.3e-96 356.3 362 51.7
Thecc.06G082700 Theobroma cacao HOM05D007289 ORTHO05D009215 5.6e-96 355.9 360 54.2
Lj9C506T12 Lonicera japonica HOM05D007289 ORTHO05D009215 1.6e-95 354.4 390 51.0
Gorai.002G058300 Gossypium raimondii HOM05D007289 ORTHO05D009215 4.7e-95 352.8 364 53.8
Gohir.A02G122500 Gossypium hirsutum HOM05D007289 ORTHO05D009215 6.1e-95 352.4 366 53.3
COL.COLO4_30328 Corchorus olitorius HOM05D007289 ORTHO05D009215 1.2e-93 348.2 363 54.0
TWI75G1369 Tripterygium wilfordii HOM05D007289 ORTHO05D009215 1.2e-93 348.2 365 53.2
Rhsim08G0218600 Rhododendron simsii HOM05D007289 ORTHO05D009215 1.5e-93 347.8 388 49.2
Atru.chr1.3224 Acer truncatum HOM05D007289 ORTHO05D009215 2.0e-93 347.4 379 51.7
PGSC0003DMG400016511 Solanum tuberosum HOM05D007289 ORTHO05D009215 2.0e-93 347.4 371 53.1
QL05p025382 Quercus lobata HOM05D007289 ORTHO05D009215 2.2e-92 344.0 380 51.6
Manes.04G121300 Manihot esculenta HOM05D007289 ORTHO05D009215 2.9e-92 343.6 368 50.3
THA.LOC104808206 Tarenaya hassleriana HOM05D007289 ORTHO05D009215 4.9e-92 342.8 369 52.0
Peaxi162Scf00207g00834 Petunia axillaris HOM05D007289 ORTHO05D009215 8.3e-92 342.0 307 58.6
Sc12g0009160 Simmondsia chinensis HOM05D007289 ORTHO05D009215 2.4e-91 340.5 384 49.2
Nitab4.5_0002327g0060 Nicotiana tabacum HOM05D007289 ORTHO05D009215 3.2e-91 340.1 360 52.8
Cc04_g03590 Coffea canephora HOM05D007289 ORTHO05D009215 4.1e-91 339.7 359 50.1
Hund06601 Selenicereus undatus HOM05D007289 ORTHO05D009215 7.0e-91 339.0 381 48.3
Sopen06g025060 Solanum pennellii HOM05D007289 ORTHO05D009215 1.2e-90 338.2 371 52.0
Solyc06g066780.3 Solanum lycopersicum HOM05D007289 ORTHO05D009215 2.0e-90 337.4 369 52.0
PGR102G0666 Punica granatum HOM05D007289 ORTHO05D009215 7.8e-90 335.5 369 50.9
FAN09G0173 Fragaria x ananassa HOM05D007289 ORTHO05D009215 8.6e-89 332.0 326 53.4
GSVIVG01017153001 Vitis vinifera HOM05D007289 ORTHO05D009215 1.1e-88 331.6 318 55.0
AT1G80420 Arabidopsis thaliana HOM05D007289 ORTHO05D009215 1.9e-88 330.9 369 51.2
Oeu033497.1 Olea europaea HOM05D007289 ORTHO05D009215 5.6e-88 329.3 354 50.6
CAN.G395.19 Capsicum annuum HOM05D007289 ORTHO05D009215 9.5e-88 328.6 358 50.6
MSTRG.11091 Avicennia marina HOM05D007289 ORTHO05D009215 2.1e-87 327.4 362 48.9
Thhalv10018735m.g Eutrema salsugineum HOM05D007289 ORTHO05D009215 2.8e-87 327.0 382 49.0
AL2G41080 Arabidopsis lyrata HOM05D007289 ORTHO05D009215 3.6e-87 326.6 364 50.0
AUR62016430 Chenopodium quinoa HOM05D007289 ORTHO05D009215 1.4e-86 324.7 385 47.8
Aa31LG4G690 Aethionema arabicum HOM05D007289 ORTHO05D009215 1.8e-86 324.3 377 48.3
Lsat_1_v5_gn_4_103480 Lactuca sativa HOM05D007289 ORTHO05D009215 1.8e-86 324.3 368 49.7
AUR62011614 Chenopodium quinoa HOM05D007289 ORTHO05D009215 3.1e-86 323.6 380 47.9
Os06g0144000 Oryza sativa ssp. japonica HOM05D007289 ORTHO05D009215 1.5e-85 321.2 359 51.8
CARHR074820 Cardamine hirsuta HOM05D007289 ORTHO05D009215 7.5e-85 318.9 370 48.6
HanXRQChr16g0501051 Helianthus annuus HOM05D007289 ORTHO05D009215 3.7e-84 316.6 359 49.6
BolC2t09743H Brassica oleracea HOM05D007289 ORTHO05D009215 6.4e-84 315.8 367 48.5
Migut.I00845 Erythranthe guttata HOM05D007289 ORTHO05D009215 6.4e-84 315.8 358 50.0
C02p37330 Brassica napus HOM05D007289 ORTHO05D009215 1.9e-83 314.3 371 48.5
BcaC03g15968 Brassica carinata HOM05D007289 ORTHO05D009215 2.4e-83 313.9 367 48.5
Sp5g35390 Schrenkiella parvula HOM05D007289 ORTHO05D009215 3.2e-83 313.5 377 49.3
ECA232G0523 Erigeron canadensis HOM05D007289 ORTHO05D009215 7.1e-83 312.4 357 50.4
Carub.0002s2715 Capsella rubella HOM05D007289 ORTHO05D009215 6.0e-82 309.3 381 47.2
BcaB05g25270 Brassica carinata HOM05D002927 ORTHO05D003841 7.8e-82 308.9 394 46.4
A02p23560 Brassica napus HOM05D007289 ORTHO05D009215 5.1e-81 306.2 364 47.8
BraA02t07349Z Brassica rapa HOM05D007289 ORTHO05D009215 5.1e-81 306.2 364 47.8
Duzib235G0864 Durio zibethinus HOM05D007289 ORTHO05D009215 7.3e-80 302.4 359 48.5
Actinidia15825 Actinidia chinensis HOM05D002927 ORTHO05D003841 1.2e-79 301.6 330 51.2
Glyma.15G013100 Glycine max HOM05D007289 ORTHO05D009215 2.8e-79 300.4 233 67.4
Nn8g39279 Nelumbo nucifera HOM05D007289 ORTHO05D009215 3.6e-79 300.1 336 50.9
EL10Ac9g21988 Beta vulgaris HOM05D007289 ORTHO05D009215 2.0e-77 294.3 451 41.7
ATR0037G063 Amborella trichopoda HOM05D007289 ORTHO05D009215 2.6e-77 293.9 396 44.7
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 2.1e-74 284.3 385 43.6
PSO339G0085 Papaver somniferum HOM05D007289 ORTHO05D009215 1.3e-73 281.6 274 54.7
SalBow2G1977 Salvia bowleyana HOM05D007289 ORTHO05D009215 4.9e-68 263.1 365 43.6
Cpa.g.sc10.164 Carica papaya HOM05D007289 ORTHO05D009215 1.9e-67 261.2 288 47.6
Haze_16457 Corylus avellana HOM05D007289 ORTHO05D009215 7.3e-64 249.2 569 33.4
SEGI_14605 Sequoiadendron giganteum HOM05D007289 ORTHO05D009215 2.8e-63 247.3 346 41.3
HPP92_000676 Vanilla planifolia HOM05D007289 ORTHO05D009215 4.9e-60 236.5 277 45.5
Pp3c15_20480 Physcomitrium patens HOM05D007289 ORTHO05D009215 5.8e-53 213.0 329 37.4
FAN05G4017 Fragaria x ananassa HOM05D007289 ORTHO05D009215 1.3e-49 201.8 203 54.7
Gohir.D03G073900 Gossypium hirsutum HOM05D007289 ORTHO05D009215 2.8e-47 194.1 187 57.8
ClCG09G002310 Citrullus lanatus HOM05D007289 ORTHO05D009215 6.2e-47 193.0 165 56.4
Eucgr.F03006 Eucalyptus grandis HOM05D007289 ORTHO05D009215 5.8e-45 186.4 224 45.5
Mapoly0044s0047 Marchantia polymorpha HOM05D007289 ORTHO05D009215 1.2e-42 178.7 341 34.0
FAN05G4871 Fragaria x ananassa HOM05D007289 ORTHO05D009215 4.6e-42 176.8 101 77.2
unitig_21.g20513 Utricularia gibba HOM05D007289 ORTHO05D009215 3.7e-39 167.2 366 33.9
Nitab4.5_0021849g0010 Nicotiana tabacum HOM05D007289 ORTHO05D009215 1.8e-38 164.9 214 47.2
SEGI_13111 Sequoiadendron giganteum HOM05D007289 ORTHO05D009215 5.0e-36 156.8 159 49.7
TWI12G0812 Tripterygium wilfordii HOM05D007289 ORTHO05D009215 1.1e-35 155.6 165 53.3
Zm00001eb377280 Zea mays HOM05D007289 ORTHO05D009215 2.3e-33 147.9 192 44.3
ClCG09G002320 Citrullus lanatus HOM05D007289 ORTHO05D009215 8.7e-33 146.0 259 41.3
CBR_g23739 Chara braunii HOM05D007289 ORTHO05D009215 6.9e-30 136.3 105 57.1
Lj2P1136T43 Lonicera japonica HOM05D007289 ORTHO05D009215 3.6e-26 124.0 111 58.6
Hma1.2p1_0845F.1_g227540 Hydrangea macrophylla HOM05D007289 ORTHO05D009215 4.8e-23 113.6 106 54.7
Ah.01g011120 Amaranthus hybridus HOM05D007289 ORTHO05D009215 1.7e-20 105.1 153 42.5
Ca_15812_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 2.7e-10 71.2 251 27.9
Ca_02351_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 6.7e-09 66.6 204 27.0
Ca_06734_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 4.4e-08 63.9 259 25.9
Ca_15813_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 7.5e-08 63.2 141 31.9
Lalb_Chr02g0140661 Lupinus albus HOM05D000002 ORTHO05D000001 1.3e-07 62.4 138 30.4
ECA232G3531 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.8e-07 61.2 179 30.2
Sopen10g011830 Solanum pennellii HOM05D000006 ORTHO05D000001 3.7e-07 60.8 165 29.7
Pp3c21_18730 Physcomitrium patens HOM05D007289 ORTHO05D009215 6.3e-07 60.1 110 26.4
EL10Ac3g06472 Beta vulgaris HOM05D000002 ORTHO05D000001 8.2e-07 59.7 149 28.2
CDE02G2376 Ceratophyllum demersum HOM05D001245 ORTHO05D004475 8.2e-07 59.7 85 36.5
Ca_05915_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 8.2e-07 59.7 170 30.0
SHI11052 Sapria himalayana HOM05D000006 ORTHO05D000001 8.2e-07 59.7 130 31.5
Lalb_Chr22g0354211 Lupinus albus HOM05D000002 ORTHO05D000001 1.1e-06 59.3 140 30.7
Aqoxy6G00310 Aquilegia oxysepala HOM05D001245 ORTHO05D004475 1.8e-06 58.5 84 36.9
SHI09614 Sapria himalayana HOM05D000002 ORTHO05D000001 1.8e-06 58.5 108 33.3
Sopen06g008570 Solanum pennellii HOM05D000002 ORTHO05D000001 2.4e-06 58.2 150 27.3
Sopen10g023120 Solanum pennellii HOM05D000002 ORTHO05D000001 2.4e-06 58.2 203 27.1
Sopen11g024950 Solanum pennellii HOM05D000004 ORTHO05D000002 2.4e-06 58.2 125 33.6
SHI09985 Sapria himalayana HOM05D000002 ORTHO05D000001 3.1e-06 57.8 162 30.9
SHI23401 Sapria himalayana HOM05D000002 ORTHO05D000001 3.1e-06 57.8 114 32.5
CSS0030817 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.3e-06 57.0 182 27.5
Ca_23749_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 5.3e-06 57.0 144 31.2
Ca_18461_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 7.0e-06 56.6 141 33.3
ECA232G1895 Erigeron canadensis HOM05D000315 ORTHO05D000527 7.0e-06 56.6 151 30.5
ECA232G4299 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.0e-06 56.6 199 29.1
ECA233G0478 Erigeron canadensis HOM05D000006 ORTHO05D000001 7.0e-06 56.6 93 38.7
HanXRQChr09g0272931 Helianthus annuus HOM05D000002 ORTHO05D000001 7.0e-06 56.6 212 27.8
SHI39436 Sapria himalayana HOM05D000002 ORTHO05D000001 7.0e-06 56.6 119 31.9
SHI39438 Sapria himalayana HOM05D000002 ORTHO05D000001 7.0e-06 56.6 119 31.9
ECA232G2478 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.1e-06 56.2 132 30.3
ECA233G1505 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.1e-06 56.2 132 30.3
ECA238G1149 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.1e-06 56.2 132 30.3
ECA238G1515 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.1e-06 56.2 132 30.3
ECA240G2946 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.1e-06 56.2 132 30.3
ECA248G1039 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.1e-06 56.2 132 30.3
ECA248G3034 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.1e-06 56.2 132 30.3
TWI34G1866 Tripterygium wilfordii HOM05D001245 ORTHO05D004475 9.1e-06 56.2 80 33.8


User provided reference genes

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