Gene: AT1G80420
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G80420
- Transcript Identifier AT1G80420.2
- Gene Type Coding gene
- Location Chr1 : 30235444-30237163 : negative
Gene Family Information
- ID HOM05D007289
- #Genes/#Species 107/91
- Phylogenetic origin
- ID ORTHO05D009215
- #Genes/#Species 107/91
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT1G80420.2
- symbol ATXRCC1
- uniprot Q24JK4
Descriptions
- Description BRCT domain-containing DNA repair protein
- Computational description ATXRCC1; FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: DNA repair; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); Has 261 Blast hits to 261 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 156; Fungi - 25; Plants - 49; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006303 | IEA | GOA Database | double-strand break repair via nonhomologous end joining | |
| GO:0006303 | IMP | Gene Ontology | double-strand break repair via nonhomologous end joining | 1 |
| GO:0006303 | IEA | InterPro | double-strand break repair via nonhomologous end joining | |
| GO:0006284 | IEA | Gene Ontology | base-excision repair | |
| GO:0006284 | IEA | InterPro | base-excision repair | |
| GO:0000012 | IEA | Gene Ontology | single strand break repair | |
| GO:0000012 | IEA | InterPro | single strand break repair | |
| GO:0006974 | IEA | GOA Database | cellular response to DNA damage stimulus | |
| GO:0006281 | IEA | GOA Database | DNA repair | |
| GO:1901972 | IDA | Gene Ontology | positive regulation of DNA-5-methylcytosine glycosylase activity | 2 |
| GO:1901969 | IDA | Gene Ontology | positive regulation of polynucleotide 3'-phosphatase activity | 2 |
| GO:0080111 | IMP | Gene Ontology | DNA demethylation | 2 |
| GO:0006266 | IMP | Gene Ontology | DNA ligation | 2 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003684 | IEA | Gene Ontology | damaged DNA binding | |
| GO:0003684 | IEA | InterPro | damaged DNA binding | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0010385 | IDA | Gene Ontology | double-stranded methylated DNA binding | 2 |
| GO:0005515 | IPI | Gene Ontology | protein binding | 2 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISM | Gene Ontology | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 14.5.7 | DNA damage response.base excision repair (BER).DNA repair protein (XRCC1) |