Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g098510 Medicago truncatula HOM05D004763 ORTHO05D007492 0.0e+00 1311.2 672 100.0
Psat5g288480 Pisum sativum HOM05D004763 ORTHO05D007492 0.0e+00 1249.6 672 94.0
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 0.0e+00 1233.8 663 94.1
Lalb_Chr14g0372291 Lupinus albus HOM05D004763 ORTHO05D007492 0.0e+00 1212.6 675 92.0
Glyma.13G342900 Glycine max HOM05D004763 ORTHO05D007492 0.0e+00 1202.6 671 90.9
Phvul.005G150500 Phaseolus vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1193.7 669 90.9
Lj3g0020649 Lotus japonicus HOM05D004763 ORTHO05D007492 0.0e+00 1186.0 669 89.8
arahy.Tifrunner.gnm1.ann1.P0K6XU Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1182.2 670 89.3
arahy.Tifrunner.gnm1.ann1.VYK1P0 Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1181.8 672 88.8
arahy.Tifrunner.gnm1.ann1.GN3GFY Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1179.9 672 88.7
arahy.Tifrunner.gnm1.ann1.X75IXN Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1157.1 710 83.7
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 0.0e+00 1148.7 642 90.2
Manes.14G014500 Manihot esculenta HOM05D004763 ORTHO05D007492 0.0e+00 1147.9 669 85.7
CSS0044360 Camellia sinensis var. sinensis HOM05D004763 ORTHO05D007492 0.0e+00 1144.8 668 85.9
TWI34G0672 Tripterygium wilfordii HOM05D004763 ORTHO05D007492 0.0e+00 1143.6 669 85.9
GSVIVG01025336001 Vitis vinifera HOM05D004763 ORTHO05D007492 0.0e+00 1143.3 669 86.1
Gorai.013G250000 Gossypium raimondii HOM05D004763 ORTHO05D007492 0.0e+00 1142.9 666 85.4
CiPaw.14G125100 Carya illinoinensis HOM05D004763 ORTHO05D007492 0.0e+00 1140.9 667 85.3
QL01p006243 Quercus lobata HOM05D004763 ORTHO05D007492 0.0e+00 1140.6 670 85.7
Gohir.D13G219100 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1139.8 666 85.1
Thecc.09G223100 Theobroma cacao HOM05D004763 ORTHO05D007492 0.0e+00 1139.4 668 85.5
Dinv36304 Davidia involucrata HOM05D004763 ORTHO05D007492 0.0e+00 1137.5 669 85.4
Cc01_g04070 Coffea canephora HOM05D004763 ORTHO05D007492 0.0e+00 1135.6 670 84.0
Gohir.A13G215400 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1134.8 666 84.8
MELO3C014639.2 Cucumis melo HOM05D004763 ORTHO05D007492 0.0e+00 1134.0 665 85.6
Potri.003G211000 Populus trichocarpa HOM05D004763 ORTHO05D007492 0.0e+00 1134.0 666 86.0
CsaV3_4G023800 Cucumis sativus L. HOM05D004763 ORTHO05D007492 0.0e+00 1132.5 665 85.4
Sc09g0000480 Simmondsia chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1131.7 670 84.3
TAR623G1126 Trochodendron aralioides HOM05D004763 ORTHO05D007492 0.0e+00 1131.3 671 84.1
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 0.0e+00 1130.9 671 85.1
Hund22081 Selenicereus undatus HOM05D004763 ORTHO05D007492 0.0e+00 1130.9 669 85.4
Hma1.2p1_1169F.1_g263300 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 0.0e+00 1126.3 669 84.5
CANSAT54G1729 Cannabis sativa HOM05D004763 ORTHO05D007492 0.0e+00 1121.3 678 85.3
Sed0013957 Sechium edule HOM05D004763 ORTHO05D007492 0.0e+00 1118.2 665 84.4
AUR62019250 Chenopodium quinoa HOM05D004763 ORTHO05D007492 0.0e+00 1112.4 670 84.0
Cpa.g.sc84.111 Carica papaya HOM05D004763 ORTHO05D007492 0.0e+00 1106.7 701 80.9
Nn7g36058 Nelumbo nucifera HOM05D004763 ORTHO05D007492 0.0e+00 1106.7 670 83.4
HanXRQChr14g0451781 Helianthus annuus HOM05D004763 ORTHO05D007492 0.0e+00 1104.0 673 82.2
PSO339G3791 Papaver somniferum HOM05D004763 ORTHO05D007492 0.0e+00 1102.8 670 83.9
THA.LOC104816912 Tarenaya hassleriana HOM05D004763 ORTHO05D007492 0.0e+00 1101.7 664 83.3
EL10Ac4g10318 Beta vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1100.1 661 83.8
Eucgr.B03662 Eucalyptus grandis HOM05D004763 ORTHO05D007492 0.0e+00 1100.1 670 82.5
Sopen01g009200 Solanum pennellii HOM05D004763 ORTHO05D007492 0.0e+00 1099.0 669 82.2
COL.COLO4_09893 Corchorus olitorius HOM05D004763 ORTHO05D007492 0.0e+00 1098.2 664 82.8
Prupe.6G018600 Prunus persica HOM05D004763 ORTHO05D007492 0.0e+00 1098.2 686 82.1
Sabra03G0153800 Salix brachista HOM05D004763 ORTHO05D007492 0.0e+00 1097.4 647 85.3
Sabra03G0156000 Salix brachista HOM05D004763 ORTHO05D007492 0.0e+00 1097.4 647 85.3
Solyc01g014490.4 Solanum lycopersicum HOM05D004763 ORTHO05D007492 0.0e+00 1097.0 669 82.1
Ciclev10014511m.g Citrus clementina HOM05D004763 ORTHO05D007492 0.0e+00 1096.6 663 84.0
AL3G34700 Arabidopsis lyrata HOM05D004763 ORTHO05D007492 0.0e+00 1094.7 661 82.8
Aqoxy1G00185 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 0.0e+00 1094.3 668 82.8
Carub.0003s2074 Capsella rubella HOM05D004763 ORTHO05D007492 0.0e+00 1093.2 662 82.8
AT3G20780 Arabidopsis thaliana HOM05D004763 ORTHO05D007492 0.0e+00 1091.6 662 82.3
ECA238G4453 Erigeron canadensis HOM05D004763 ORTHO05D007492 0.0e+00 1090.1 673 81.7
MD03G1021100 Malus domestica HOM05D004763 ORTHO05D007492 0.0e+00 1087.8 670 82.2
RcHm_v2.0_Chr5g0078101 Rosa chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1087.8 662 83.2
BcaC05g28282 Brassica carinata HOM05D004763 ORTHO05D007492 0.0e+00 1085.5 665 81.8
FvH4_3g43550 Fragaria vesca HOM05D004763 ORTHO05D007492 0.0e+00 1085.5 662 82.9
Peaxi162Scf00773g00119 Petunia axillaris HOM05D004763 ORTHO05D007492 0.0e+00 1085.1 677 81.1
C05p43300 Brassica napus HOM05D004763 ORTHO05D007492 0.0e+00 1084.7 665 81.7
PGR102G0325 Punica granatum HOM05D004763 ORTHO05D007492 0.0e+00 1084.3 669 82.7
Duzib150G1218 Durio zibethinus HOM05D004763 ORTHO05D007492 0.0e+00 1081.2 689 80.1
Sp3g18800 Schrenkiella parvula HOM05D004763 ORTHO05D007492 0.0e+00 1080.1 667 81.4
Thhalv10020214m.g Eutrema salsugineum HOM05D004763 ORTHO05D007492 0.0e+00 1078.5 665 81.2
Migut.D00558 Erythranthe guttata HOM05D004763 ORTHO05D007492 0.0e+00 1075.1 671 81.4
BcaB06g26148 Brassica carinata HOM05D004763 ORTHO05D007492 9.2e-312 1073.2 669 81.0
FAN16G3272 Fragaria x ananassa HOM05D004763 ORTHO05D007492 9.2e-312 1072.8 672 81.4
Nitab4.5_0006575g0020 Nicotiana tabacum HOM05D004763 ORTHO05D007492 1.8e-311 1072.0 691 79.9
A05p28000 Brassica napus HOM05D004763 ORTHO05D007492 6.9e-311 1070.1 679 80.1
BraA05t21683Z Brassica rapa HOM05D004763 ORTHO05D007492 6.6e-309 1063.5 687 79.2
Ca_01270_v3 Cicer arietinum L. HOM05D004763 ORTHO05D007492 1.2e-307 1059.3 597 90.6
Nitab4.5_0003069g0050 Nicotiana tabacum HOM05D004763 ORTHO05D007492 4.7e-307 1057.4 678 80.2
BolC5t33062H Brassica oleracea HOM05D004763 ORTHO05D007492 6.1e-307 1057.0 696 77.6
Os09g0279600 Oryza sativa ssp. japonica HOM05D004763 ORTHO05D007492 1.0e-306 1056.2 646 80.7
HPP92_020536 Vanilla planifolia HOM05D004763 ORTHO05D007492 1.5e-305 1052.4 667 79.2
ATR0605G091 Amborella trichopoda HOM05D004763 ORTHO05D007492 1.2e-302 1042.7 672 78.9
SGA_v2.0_scaffold1G00797 Striga asiatica HOM05D004763 ORTHO05D007492 4.3e-300 1034.2 723 75.2
Rhsim01G0189300 Rhododendron simsii HOM05D004763 ORTHO05D007492 6.8e-298 1026.9 753 72.4
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 1.3e-296 1022.7 641 79.4
Lsat_1_v5_gn_2_101121 Lactuca sativa HOM05D004763 ORTHO05D007492 7.0e-295 1016.9 694 75.4
Actinidia39377 Actinidia chinensis HOM05D004763 ORTHO05D007492 4.0e-290 1001.1 670 77.6
Aa31LG8G7590 Aethionema arabicum HOM05D004763 ORTHO05D007492 2.6e-289 998.4 644 78.9
Lj4g0010878 Lotus japonicus HOM05D004763 ORTHO05D007492 3.9e-285 984.6 669 78.5
Ah.04g161760 Amaranthus hybridus HOM05D004763 ORTHO05D007492 2.9e-280 968.4 671 75.6
Pp3c22_12720 Physcomitrium patens HOM05D004763 ORTHO05D007492 4.0e-274 948.0 666 71.6
AagrBONN_evm.TU.Sc2ySwM_344.3405 Anthoceros agrestis HOM05D004763 ORTHO05D007492 1.2e-273 946.4 646 72.6
Atru.chr3.2503 Acer truncatum HOM05D004763 ORTHO05D007492 1.5e-273 946.0 582 80.9
CARHR096610 Cardamine hirsuta HOM05D004763 ORTHO05D007492 2.9e-272 941.8 590 80.0
DCAR_024396 Daucus carota HOM05D004763 ORTHO05D007492 4.9e-272 941.0 675 73.3
SMO116G0144 Selaginella moellendorffii HOM05D004763 ORTHO05D007492 8.4e-264 913.7 652 71.6
Mapoly0042s0060 Marchantia polymorpha HOM05D004763 ORTHO05D007492 2.4e-263 912.1 666 68.8
Aqoxy381s001 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 8.1e-259 897.1 654 72.6
FAN21G2003 Fragaria x ananassa HOM05D004763 ORTHO05D007492 3.4e-257 891.7 635 74.3
CBR_g31022 Chara braunii HOM05D004763 ORTHO05D007492 2.3e-253 879.0 661 66.9
Hma1.2p1_1169F.1_g263310 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 5.6e-252 874.4 509 83.9
FAN11G2145 Fragaria x ananassa HOM05D004763 ORTHO05D007492 3.8e-248 861.7 699 66.8
FAN11G0713 Fragaria x ananassa HOM05D004763 ORTHO05D007492 6.7e-245 850.9 699 66.2
Potri.T085401 Populus trichocarpa HOM05D004763 ORTHO05D007492 1.4e-234 816.6 443 91.0
Zm00001eb308780 Zea mays HOM05D004763 ORTHO05D007492 9.1e-218 760.8 462 79.7
Cre01.g019750 Chlamydomonas reinhardtii HOM05D004763 ORTHO05D007492 6.5e-200 701.4 678 54.9
Lsat_1_v5_gn_1_127001 Lactuca sativa HOM05D004763 ORTHO05D007492 2.5e-183 646.4 535 63.9
MBI01_g15753_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D007492 2.6e-180 636.3 368 87.5
SEGI_32015 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 4.4e-180 635.6 382 80.6
ClCG02G023620 Citrullus lanatus HOM05D004763 ORTHO05D007492 2.4e-178 629.8 368 87.2
MCO09G243 Micromonas commoda HOM05D004763 ORTHO05D007492 1.2e-177 627.5 665 52.3
PRCOL_00005940 Prasinoderma coloniale HOM05D004763 ORTHO05D007492 9.8e-172 607.8 672 50.7
CAN.G646.1 Capsicum annuum HOM05D004763 ORTHO05D007492 2.2e-171 606.7 361 85.0
PGSC0003DMG401029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 4.1e-170 602.4 382 81.2
Lju1319A4T15 Lonicera japonica HOM05D004763 ORTHO05D007492 9.6e-143 511.5 306 82.7
Lsat_1_v5_gn_1_127121 Lactuca sativa HOM05D004763 ORTHO05D007492 8.1e-142 508.4 614 50.8
Lj1A366T12 Lonicera japonica HOM05D004763 ORTHO05D007492 8.1e-142 508.4 367 73.0
CAN.G442.1 Capsicum annuum HOM05D004763 ORTHO05D007492 6.0e-137 492.3 308 79.9
PGSC0003DMG402029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 2.3e-136 490.3 307 79.5
Lj1C366G5 Lonicera japonica HOM05D004763 ORTHO05D007492 7.2e-114 415.6 298 72.1
Lsat_1_v5_gn_1_126981 Lactuca sativa HOM05D004763 ORTHO05D007492 7.9e-113 412.1 467 52.2
Actinidia06319 Actinidia chinensis HOM05D004763 ORTHO05D007492 1.2e-79 302.0 216 70.4
SEGI_39045 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 2.6e-79 300.8 217 69.1
TPR.G29743 Trifolium pratense HOM05D004763 ORTHO05D007492 1.1e-64 252.3 221 64.7
Eucgr.B03660 Eucalyptus grandis HOM05D004763 ORTHO05D007492 7.5e-63 246.1 177 70.6
TPR.G29742 Trifolium pratense HOM05D004763 ORTHO05D007492 6.6e-59 233.0 241 56.8
Lju1319C4G3 Lonicera japonica HOM05D004763 ORTHO05D014896 5.6e-58 229.9 234 59.4
Lsat_1_v5_gn_1_126941 Lactuca sativa HOM05D004763 ORTHO05D007492 6.6e-51 206.5 205 53.7
Oeu036968.1 Olea europaea HOM05D004763 ORTHO05D007492 1.9e-50 204.9 104 88.5
Lsat_1_v5_gn_1_127201 Lactuca sativa HOM05D004763 ORTHO05D007492 7.6e-39 166.4 401 33.2
Lsat_1_v5_gn_1_127161 Lactuca sativa HOM05D004763 ORTHO05D007492 7.1e-37 159.8 183 51.9
Ca_01269_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 9.3e-37 159.5 86 96.5
MBI09_g40619_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D019264 2.1e-33 148.3 87 81.6
MBI04_g09599_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 2.8e-33 147.9 87 81.6
Aa31LG8G7550 Aethionema arabicum HOM05D004763 ORTHO05D007492 3.6e-33 147.5 465 33.3
MBI02_g24793_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 2.4e-32 144.8 87 80.5
Thecc.03G073800 Theobroma cacao HOM05D004763 ORTHO05D019264 9.0e-32 142.9 107 67.3
PGSC0003DMG400012096 Solanum tuberosum HOM05D004763 ORTHO05D014896 1.3e-27 129.0 86 79.1
PGSC0003DMG401017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 1.1e-24 119.4 114 54.4
arahy.Tifrunner.gnm1.ann1.50I1V9 Arachis hypogaea HOM05D004763 ORTHO05D014896 7.9e-20 103.2 68 80.9
arahy.Tifrunner.gnm1.ann1.F7UR4V Arachis hypogaea HOM05D004763 ORTHO05D014896 7.9e-20 103.2 68 80.9
arahy.Tifrunner.gnm1.ann1.G1IAFF Arachis hypogaea HOM05D004763 ORTHO05D014896 2.3e-19 101.7 82 68.3
Lsat_1_v5_gn_3_118680 Lactuca sativa HOM05D004763 ORTHO05D007492 1.1e-18 99.4 55 87.3
PGSC0003DMG400026817 Solanum tuberosum HOM05D004763 ORTHO05D026177 5.6e-18 97.1 82 69.5
Lju1319A4T14 Lonicera japonica HOM05D004763 ORTHO05D019264 2.8e-17 94.7 54 83.3
Sopen04g015550 Solanum pennellii HOM05D000004 ORTHO05D000002 1.4e-16 92.4 97 60.8
Lsat_1_v5_gn_1_125620 Lactuca sativa HOM05D004763 ORTHO05D007492 4.5e-15 87.4 201 33.8
arahy.Tifrunner.gnm1.ann1.65KXHR Arachis hypogaea HOM05D004763 ORTHO05D014896 5.8e-15 87.0 49 91.8
TWI60G1170 Tripterygium wilfordii HOM05D004763 ORTHO05D014896 1.0e-14 86.3 49 89.8
Solyc11g028310.3 Solanum lycopersicum HOM05D004763 ORTHO05D026177 8.4e-14 83.2 63 73.0
arahy.Tifrunner.gnm1.ann1.YT3XVJ Arachis hypogaea HOM05D012186 ORTHO05D009594 1.9e-13 82.0 91 54.9
Lsat_1_v5_gn_1_126960 Lactuca sativa HOM05D004763 ORTHO05D012314 9.3e-13 79.7 68 54.4
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 6.0e-12 77.0 44 81.8
PGSC0003DMG400019106 Solanum tuberosum HOM05D004763 ORTHO05D007492 9.7e-10 69.7 37 86.5
Solyc12g036030.1 Solanum lycopersicum HOM05D004763 ORTHO05D026177 2.2e-09 68.6 105 45.7
Aa31LG8G7540 Aethionema arabicum HOM05D004763 ORTHO05D007492 1.1e-08 66.2 67 52.2
Solyc11g028340.3 Solanum lycopersicum HOM05D004763 ORTHO05D019264 2.4e-08 65.1 55 52.7
TPR.G29746 Trifolium pratense HOM05D004763 ORTHO05D412220 9.0e-08 63.2 37 81.1
Lsat_1_v5_gn_8_146221 Lactuca sativa HOM05D004763 ORTHO05D014896 7.7e-07 60.1 40 77.5
Solyc11g028350.1 Solanum lycopersicum HOM05D004763 ORTHO05D019264 2.9e-06 58.2 40 62.5
PGSC0003DMG402017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 2.9e-06 58.2 46 71.7
RcHm_v2.0_Chr3g0472751 Rosa chinensis HOM05D004763 ORTHO05D344474 5.0e-06 57.4 38 81.6
arahy.Tifrunner.gnm1.ann1.NZV0HQ Arachis hypogaea HOM05D004763 ORTHO05D014896 6.5e-06 57.0 33 90.9


User provided reference genes

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