Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g029940 Medicago truncatula HOM05D005639 ORTHO05D007234 5.0e-237 824.3 505 100.0
Psat1g168120 Pisum sativum HOM05D005639 ORTHO05D007234 8.9e-210 733.8 506 84.0
Ca_00807_v3 Cicer arietinum L. HOM05D005639 ORTHO05D007234 4.8e-195 684.9 428 90.2
VMungo0540G0794 Vigna mungo HOM05D005639 ORTHO05D007234 2.5e-183 646.0 501 73.5
Phvul.006G129100 Phaseolus vulgaris HOM05D005639 ORTHO05D007234 4.2e-183 645.2 501 74.7
Lj6g0009484 Lotus japonicus HOM05D005639 ORTHO05D007234 1.0e-181 640.6 505 74.1
Glyma.09G023100 Glycine max HOM05D005639 ORTHO05D007234 3.2e-175 619.0 441 79.6
Lalb_Chr18g0057911 Lupinus albus HOM05D005639 ORTHO05D007234 8.7e-173 610.9 515 70.3
arahy.Tifrunner.gnm1.ann1.JS3IU7 Arachis hypogaea HOM05D005639 ORTHO05D007234 3.6e-166 589.0 522 68.2
arahy.Tifrunner.gnm1.ann1.MSHM5J Arachis hypogaea HOM05D005639 ORTHO05D007234 5.9e-161 571.6 562 63.7
Prupe.4G089600 Prunus persica HOM05D005639 ORTHO05D007234 1.8e-154 550.1 496 64.5
Ciclev10014949m.g Citrus clementina HOM05D005639 ORTHO05D007234 7.7e-153 544.7 518 65.4
GSVIVG01021618001 Vitis vinifera HOM05D005639 ORTHO05D007234 8.5e-152 541.2 443 67.7
Cpa.g.sc19.212 Carica papaya HOM05D005639 ORTHO05D007234 8.0e-150 534.6 508 62.0
TWI73G0023 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 8.0e-150 534.6 443 68.2
CSS0044875 Camellia sinensis var. sinensis HOM05D005639 ORTHO05D007234 2.3e-149 533.1 515 67.6
MD10G1254000 Malus domestica HOM05D005639 ORTHO05D007234 2.3e-149 533.1 506 61.9
Rhsim13G0120200 Rhododendron simsii HOM05D005639 ORTHO05D007234 9.7e-148 527.7 441 68.0
MD05G1274300 Malus domestica HOM05D005639 ORTHO05D007234 8.2e-147 524.6 505 65.1
vmacro03396 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 2.4e-146 523.1 441 70.1
ClCG08G001610 Citrullus lanatus HOM05D005639 ORTHO05D007234 9.1e-146 521.2 510 61.4
Atru.chr10.888 Acer truncatum HOM05D005639 ORTHO05D007234 1.2e-145 520.8 502 61.4
Dinv03058 Davidia involucrata HOM05D005639 ORTHO05D007234 1.6e-145 520.4 440 69.1
CsaV3_5G039540 Cucumis sativus L. HOM05D005639 ORTHO05D007234 4.5e-145 518.8 497 61.6
CiPaw.04G138400 Carya illinoinensis HOM05D005639 ORTHO05D007234 7.7e-145 518.1 443 65.5
Eucgr.D00190 Eucalyptus grandis HOM05D005639 ORTHO05D007234 3.8e-144 515.8 449 64.8
TWI09G1293 Tripterygium wilfordii HOM05D005639 ORTHO05D007234 3.8e-144 515.8 504 60.7
Actinidia36001 Actinidia chinensis HOM05D005639 ORTHO05D007234 8.5e-144 514.6 447 69.1
QL03p009300 Quercus lobata HOM05D005639 ORTHO05D007234 1.1e-143 514.2 536 53.9
THA.LOC104812393 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 2.5e-143 513.1 526 61.8
FvH4_3g09990 Fragaria vesca HOM05D005639 ORTHO05D007234 5.5e-143 511.9 442 67.2
Hma1.2p1_0333F.1_g128320 Hydrangea macrophylla HOM05D005639 ORTHO05D007234 7.2e-143 511.5 436 66.5
DCAR_003859 Daucus carota HOM05D005639 ORTHO05D007234 6.1e-142 508.4 448 65.4
PGR083G2688 Punica granatum HOM05D005639 ORTHO05D007234 6.1e-142 508.4 443 65.0
Nitab4.5_0004077g0020 Nicotiana tabacum HOM05D005639 ORTHO05D007234 1.8e-141 506.9 439 67.2
FAN21G2832 Fragaria x ananassa HOM05D005639 ORTHO05D007234 3.0e-141 506.1 503 64.8
COL.COLO4_26825 Corchorus olitorius HOM05D005639 ORTHO05D007234 5.2e-141 505.4 501 58.3
Cfa016817 Carpinus fangiana HOM05D005639 ORTHO05D007234 8.8e-141 504.6 496 59.1
Nn5g27628 Nelumbo nucifera HOM05D005639 ORTHO05D007234 1.2e-140 504.2 504 59.5
Thecc.06G000900 Theobroma cacao HOM05D005639 ORTHO05D007234 1.2e-140 504.2 441 64.4
THA.LOC104806253 Tarenaya hassleriana HOM05D005639 ORTHO05D007234 2.0e-140 503.4 443 64.6
FAN25G3670 Fragaria x ananassa HOM05D005639 ORTHO05D007234 3.4e-140 502.7 503 61.4
Nitab4.5_0002719g0080 Nicotiana tabacum HOM05D005639 ORTHO05D007234 4.4e-140 502.3 438 67.4
RcHm_v2.0_Chr5g0015871 Rosa chinensis HOM05D005639 ORTHO05D007234 4.4e-140 502.3 442 67.4
Cc09_g08220 Coffea canephora HOM05D005639 ORTHO05D007234 2.2e-139 500.0 402 68.4
Lsat_1_v5_gn_4_3900 Lactuca sativa HOM05D005639 ORTHO05D007234 8.3e-139 498.0 442 64.3
Sed0017304 Sechium edule HOM05D005639 ORTHO05D007234 1.8e-138 496.9 510 57.1
ECA234G3170 Erigeron canadensis HOM05D005639 ORTHO05D007234 3.1e-138 496.1 444 66.4
FAN16G1271 Fragaria x ananassa HOM05D005639 ORTHO05D007234 3.1e-138 496.1 451 60.8
Peaxi162Scf00670g00332 Petunia axillaris HOM05D005639 ORTHO05D007234 3.1e-138 496.1 438 67.6
Sc24g0001380 Simmondsia chinensis HOM05D005639 ORTHO05D007234 5.4e-138 495.4 402 69.2
Solyc02g069770.3 Solanum lycopersicum HOM05D005639 ORTHO05D007234 7.0e-138 495.0 440 68.2
Sopen02g018930 Solanum pennellii HOM05D005639 ORTHO05D007234 7.0e-138 495.0 440 68.0
PGSC0003DMG402021193 Solanum tuberosum HOM05D005639 ORTHO05D007234 7.0e-138 495.0 440 66.1
Sed0027243 Sechium edule HOM05D005639 ORTHO05D007234 1.2e-137 494.2 513 61.2
Haze_19855 Corylus avellana HOM05D005639 ORTHO05D007234 4.5e-137 492.3 518 56.9
Dinv01990 Davidia involucrata HOM05D005639 ORTHO05D007234 1.7e-136 490.3 496 61.5
MSTRG.13266 Avicennia marina HOM05D005639 ORTHO05D007234 2.2e-136 490.0 511 59.1
HanXRQChr17g0569471 Helianthus annuus HOM05D005639 ORTHO05D007234 3.8e-136 489.2 447 64.4
Hund22392 Selenicereus undatus HOM05D005639 ORTHO05D007234 3.2e-135 486.1 441 63.0
Gorai.005G118400 Gossypium raimondii HOM05D005639 ORTHO05D007234 7.2e-135 485.0 441 62.6
Gohir.A02G094000 Gossypium hirsutum HOM05D005639 ORTHO05D007234 9.5e-135 484.6 502 56.4
Sabra05G0051400 Salix brachista HOM05D005639 ORTHO05D007234 9.5e-135 484.6 400 65.0
Manes.13G081200 Manihot esculenta HOM05D005639 ORTHO05D007234 2.1e-134 483.4 399 67.7
Gohir.D02G104300 Gossypium hirsutum HOM05D005639 ORTHO05D007234 2.7e-134 483.0 441 62.4
SalBow7G3138 Salvia bowleyana HOM05D005639 ORTHO05D007234 3.6e-134 482.6 488 62.7
Potri.005G061000 Populus trichocarpa HOM05D005639 ORTHO05D007234 8.0e-134 481.5 400 66.2
Migut.H01334 Erythranthe guttata HOM05D005639 ORTHO05D007234 1.4e-133 480.7 402 66.7
Potri.007G107900 Populus trichocarpa HOM05D005639 ORTHO05D007234 1.8e-133 480.3 441 62.8
PSO675G8746 Papaver somniferum HOM05D005639 ORTHO05D007234 2.3e-133 479.9 441 63.3
Sabra07G0088400 Salix brachista HOM05D005639 ORTHO05D007234 3.4e-132 476.1 400 66.5
PSO541G1457 Papaver somniferum HOM05D005639 ORTHO05D007234 1.4e-130 470.7 442 63.8
TAR626G0701 Trochodendron aralioides HOM05D005639 ORTHO05D007234 1.4e-130 470.7 378 69.6
FAN11G3706 Fragaria x ananassa HOM05D005639 ORTHO05D007234 3.1e-130 469.5 449 59.0
Aqoxy1G01607 Aquilegia oxysepala HOM05D005639 ORTHO05D007234 7.0e-130 468.4 398 65.3
SGA_v2.0_scaffold106G30666 Striga asiatica HOM05D005639 ORTHO05D007234 2.0e-129 466.8 439 64.5
MELO3C022131.2 Cucumis melo HOM05D005639 ORTHO05D007234 5.9e-129 465.3 484 57.4
ATR0165G031 Amborella trichopoda HOM05D005639 ORTHO05D007234 4.0e-125 452.6 443 62.3
Ah.14g085710 Amaranthus hybridus HOM05D005639 ORTHO05D007234 5.7e-124 448.7 442 59.3
Aa31LG9G9170 Aethionema arabicum HOM05D005639 ORTHO05D007234 9.8e-124 448.0 417 64.7
HPP92_013994 Vanilla planifolia HOM05D005639 ORTHO05D007234 6.4e-123 445.3 444 59.7
Thhalv10028589m.g Eutrema salsugineum HOM05D005639 ORTHO05D007234 1.7e-120 437.2 441 59.2
AT4G21130 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 1.1e-119 434.5 507 47.5
AUR62033065 Chenopodium quinoa HOM05D005639 ORTHO05D007234 1.2e-118 431.0 409 57.0
unitig_8.g4887 Utricularia gibba HOM05D005639 ORTHO05D007234 1.2e-118 431.0 384 63.5
CARHR252170 Cardamine hirsuta HOM05D005639 ORTHO05D007234 4.7e-118 429.1 398 60.1
CiPaw.02G032400 Carya illinoinensis HOM05D005639 ORTHO05D007234 4.7e-118 429.1 502 49.0
Sp6g03680 Schrenkiella parvula HOM05D005639 ORTHO05D007234 4.7e-118 429.1 504 54.4
EL10Ac4g08968 Beta vulgaris HOM05D005639 ORTHO05D007234 6.2e-118 428.7 376 66.0
AT4G05410 Arabidopsis thaliana HOM05D005639 ORTHO05D007234 1.5e-116 424.1 387 61.5
Carub.0006s3332 Capsella rubella HOM05D005639 ORTHO05D007234 2.6e-116 423.3 444 53.8
A09p25350 Brassica napus HOM05D005639 ORTHO05D007234 4.4e-116 422.5 498 56.0
AL6G49000 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 2.9e-115 419.9 385 60.5
Zm00001eb050650 Zea mays HOM05D005639 ORTHO05D007234 2.9e-115 419.9 389 63.0
BraA09t38117Z Brassica rapa HOM05D005639 ORTHO05D007234 4.9e-115 419.1 499 53.3
BolC9t56080H Brassica oleracea HOM05D005639 ORTHO05D007234 8.3e-115 418.3 499 52.3
BcaC01g06663 Brassica carinata HOM05D005639 ORTHO05D007234 3.2e-114 416.4 386 61.4
C09p32350 Brassica napus HOM05D005639 ORTHO05D007234 3.2e-114 416.4 502 53.4
BolC3t15973H Brassica oleracea HOM05D005639 ORTHO05D007234 3.2e-114 416.4 388 61.6
BraA03t12214Z Brassica rapa HOM05D005639 ORTHO05D007234 3.2e-114 416.4 386 61.4
C03p36580 Brassica napus HOM05D005639 ORTHO05D007234 9.2e-114 414.8 386 61.1
A03p30310 Brassica napus HOM05D005639 ORTHO05D007234 2.0e-113 413.7 386 60.9
Zm00001eb218720 Zea mays HOM05D005639 ORTHO05D007234 2.0e-113 413.7 441 57.6
CDE05G0927 Ceratophyllum demersum HOM05D005639 ORTHO05D007234 6.0e-113 412.1 442 55.7
Os03g0625900 Oryza sativa ssp. japonica HOM05D005639 ORTHO05D007234 3.0e-112 409.8 391 60.6
AL7G32990 Arabidopsis lyrata HOM05D005639 ORTHO05D007234 1.5e-111 407.5 443 51.5
BcaB01g02559 Brassica carinata HOM05D005639 ORTHO05D007234 1.5e-111 407.5 393 59.8
AUR62042204 Chenopodium quinoa HOM05D005639 ORTHO05D007234 8.9e-109 398.3 410 54.1
CiPaw.10G033400 Carya illinoinensis HOM05D005639 ORTHO05D007234 1.2e-108 397.9 464 48.7
Oeu030450.1 Olea europaea HOM05D005639 ORTHO05D007234 1.5e-108 397.5 500 47.8
Glyma.15G129100 Glycine max HOM05D005639 ORTHO05D007234 1.4e-106 391.0 266 72.9
Mapoly0012s0170 Marchantia polymorpha HOM05D005639 ORTHO05D007234 1.7e-104 384.0 446 54.5
AagrBONN_evm.TU.Sc2ySwM_228.3905 Anthoceros agrestis HOM05D005639 ORTHO05D007234 7.3e-103 378.6 435 55.6
vmacro03440 Vaccinium macrocarpon HOM05D005639 ORTHO05D007234 2.9e-99 366.7 425 51.5
Pp3c15_1000 Physcomitrium patens HOM05D005639 ORTHO05D007234 2.8e-94 350.1 464 48.9
Pp3c13_22280 Physcomitrium patens HOM05D005639 ORTHO05D007234 7.6e-92 342.0 459 49.0
HanXRQChr13g0407861 Helianthus annuus HOM05D005639 ORTHO05D007234 6.6e-88 328.9 350 59.1
SMO146G0033 Selaginella moellendorffii HOM05D005639 ORTHO05D007234 5.1e-80 302.8 407 47.7
CBR_g50978 Chara braunii HOM05D005639 ORTHO05D007234 1.3e-78 298.1 469 43.7
Actinidia13478 Actinidia chinensis HOM05D005639 ORTHO05D007234 7.6e-68 262.3 187 68.4
MCO15G200 Micromonas commoda HOM05D005639 ORTHO05D007234 1.1e-61 241.9 469 34.3
PRCOL_00004480 Prasinoderma coloniale HOM05D005639 ORTHO05D007234 1.1e-55 221.9 467 36.6
Actinidia13477 Actinidia chinensis HOM05D005639 ORTHO05D007234 5.7e-55 219.5 203 60.6
C06p38580 Brassica napus HOM05D005639 ORTHO05D007234 4.2e-50 203.4 281 42.0
Cre06.g278175 Chlamydomonas reinhardtii HOM05D005639 ORTHO05D007234 2.2e-43 181.0 398 31.7
BolC6t38950H Brassica oleracea HOM05D005639 ORTHO05D007234 2.5e-42 177.6 251 40.2
Duzib235G0447 Durio zibethinus HOM05D005639 ORTHO05D007234 8.8e-40 169.1 205 42.9
Cfa027057 Carpinus fangiana HOM05D005639 ORTHO05D007234 2.1e-25 121.3 524 24.6
BcaB01g02186 Brassica carinata HOM05D005639 ORTHO05D007234 5.9e-20 103.2 141 39.7
BcaC04g22046 Brassica carinata HOM05D001874 ORTHO05D002166 2.1e-17 94.7 82 52.4
BcaB07g31331 Brassica carinata HOM05D005639 ORTHO05D007234 8.0e-17 92.8 82 51.2
A08p03340 Brassica napus HOM05D005639 ORTHO05D001462 1.4e-16 92.0 137 38.7
C08p21980 Brassica napus HOM05D005639 ORTHO05D002166 3.7e-14 84.0 165 35.2
A01p33050 Brassica napus HOM05D001874 ORTHO05D002166 3.1e-13 80.9 165 32.1
BcaB03g11915 Brassica carinata HOM05D005639 ORTHO05D007234 1.2e-09 68.9 141 31.2
HanXRQChr04g0115571 Helianthus annuus HOM05D004758 ORTHO05D006063 1.3e-06 58.9 116 32.8
Nitab4.5_0002059g0020 Nicotiana tabacum HOM05D000453 ORTHO05D000387 2.9e-06 57.8 117 34.2


User provided reference genes

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