Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g070415 Medicago truncatula HOM05D000575 ORTHO05D034198 3.4e-68 261.5 133 100.0
Medtr1g073580 Medicago truncatula HOM05D000575 ORTHO05D258397 7.9e-49 197.2 111 90.1
Medtr2g018290 Medicago truncatula HOM05D000575 ORTHO05D004448 5.2e-24 114.8 89 65.2
Medtr7g108420 Medicago truncatula HOM05D000575 ORTHO05D004448 1.5e-23 113.2 89 66.3
TPR.G20631 Trifolium pratense HOM05D000575 ORTHO05D004448 2.0e-23 112.8 89 64.0
Ca_00501_v3 Cicer arietinum L. HOM05D000575 ORTHO05D004448 4.4e-23 111.7 88 64.8
Psat1g192400 Pisum sativum HOM05D000575 ORTHO05D004448 9.8e-23 110.5 89 64.0
Lj6g0024057 Lotus japonicus HOM05D000575 ORTHO05D004448 1.7e-22 109.8 89 62.9
Lalb_Chr15g0086571 Lupinus albus HOM05D000575 ORTHO05D004448 1.8e-21 106.3 88 62.5
Lalb_Chr20g0117671 Lupinus albus HOM05D000575 ORTHO05D004448 7.0e-21 104.4 88 60.2
Cfa017937 Carpinus fangiana HOM05D000575 ORTHO05D004448 9.1e-21 104.0 88 61.4
CiPaw.02G054800 Carya illinoinensis HOM05D000575 ORTHO05D004448 1.2e-20 103.6 88 61.4
Haze_18209 Corylus avellana HOM05D000575 ORTHO05D004448 2.0e-20 102.8 88 60.2
Phvul.006G168300 Phaseolus vulgaris HOM05D000575 ORTHO05D004448 2.0e-20 102.8 88 61.4
arahy.Tifrunner.gnm1.ann1.MW6Y9I Arachis hypogaea HOM05D000575 ORTHO05D004448 2.7e-20 102.4 88 61.4
Glyma.13G222300 Glycine max HOM05D000575 ORTHO05D004448 3.5e-20 102.1 88 60.2
PGSC0003DMG400029389 Solanum tuberosum HOM05D000575 ORTHO05D004448 3.5e-20 102.1 88 61.4
Haze_10136 Corylus avellana HOM05D000575 ORTHO05D004448 4.5e-20 101.7 88 59.1
VMungo0540G0267 Vigna mungo HOM05D000575 ORTHO05D004448 5.9e-20 101.3 88 60.2
Sabra06G0180900 Salix brachista HOM05D000575 ORTHO05D004448 7.7e-20 100.9 88 60.2
Solyc12g095930.2 Solanum lycopersicum HOM05D000575 ORTHO05D004448 1.0e-19 100.5 88 60.2
Sopen12g031830 Solanum pennellii HOM05D000575 ORTHO05D004448 1.0e-19 100.5 88 60.2
arahy.Tifrunner.gnm1.ann1.H6AWHY Arachis hypogaea HOM05D000575 ORTHO05D004448 1.7e-19 99.8 88 60.2
arahy.Tifrunner.gnm1.ann1.ZLWU4E Arachis hypogaea HOM05D000575 ORTHO05D004448 1.7e-19 99.8 88 59.1
CAN.G208.74 Capsicum annuum HOM05D000575 ORTHO05D004448 1.7e-19 99.8 88 59.1
Atru.chr7.2016 Acer truncatum HOM05D000575 ORTHO05D004448 2.3e-19 99.4 88 60.2
Gohir.D06G088800 Gossypium hirsutum HOM05D000575 ORTHO05D004448 2.9e-19 99.0 88 55.7
vmacro03343 Vaccinium macrocarpon HOM05D000575 ORTHO05D004448 2.9e-19 99.0 88 60.2
unitig_899.g15399 Utricularia gibba HOM05D000575 ORTHO05D004448 5.0e-19 98.2 88 58.0
Actinidia30303 Actinidia chinensis HOM05D000575 ORTHO05D004448 6.6e-19 97.8 88 58.0
Ciclev10019689m.g Citrus clementina HOM05D000575 ORTHO05D004448 6.6e-19 97.8 88 58.0
Glyma.15G089900 Glycine max HOM05D000575 ORTHO05D004448 6.6e-19 97.8 88 56.8
Potri.006G232300 Populus trichocarpa HOM05D000575 ORTHO05D004448 6.6e-19 97.8 88 59.1
vmacro00159 Vaccinium macrocarpon HOM05D000575 ORTHO05D004448 6.6e-19 97.8 88 59.1
Eucgr.L01968 Eucalyptus grandis HOM05D000575 ORTHO05D004448 8.6e-19 97.4 88 55.7
Gorai.010G102600 Gossypium raimondii HOM05D000575 ORTHO05D004448 8.6e-19 97.4 88 54.5
MD17G1267800 Malus domestica HOM05D000575 ORTHO05D004448 8.6e-19 97.4 88 56.8
Lalb_Chr18g0055091 Lupinus albus HOM05D000575 ORTHO05D004448 1.1e-18 97.1 88 56.8
MD09G1269900 Malus domestica HOM05D000575 ORTHO05D004448 1.1e-18 97.1 88 56.8
MD10G1009100 Malus domestica HOM05D000575 ORTHO05D004448 1.1e-18 97.1 88 56.8
Prupe.8G013000 Prunus persica HOM05D000575 ORTHO05D004448 1.1e-18 97.1 88 56.8
GSVIVG01035348001 Vitis vinifera HOM05D000575 ORTHO05D004448 1.1e-18 97.1 88 59.1
Sopen08g019100 Solanum pennellii HOM05D000575 ORTHO05D004448 1.5e-18 96.7 88 58.0
TAR383G0523 Trochodendron aralioides HOM05D000575 ORTHO05D004448 1.5e-18 96.7 88 58.0
Manes.16G078300 Manihot esculenta HOM05D000575 ORTHO05D004448 1.9e-18 96.3 88 56.8
TWI38G1986 Tripterygium wilfordii HOM05D000575 ORTHO05D004448 1.9e-18 96.3 88 58.0
Aqoxy1G01854 Aquilegia oxysepala HOM05D000575 ORTHO05D004448 2.5e-18 95.9 88 56.8
CAN.G6.18 Capsicum annuum HOM05D000575 ORTHO05D004448 3.3e-18 95.5 88 55.7
arahy.Tifrunner.gnm1.ann1.6YG2VI Arachis hypogaea HOM05D000575 ORTHO05D004448 4.2e-18 95.1 88 56.8
Duzib168G0126 Durio zibethinus HOM05D000575 ORTHO05D008369 4.2e-18 95.1 88 54.5
Sed0019045 Sechium edule HOM05D000575 ORTHO05D004448 4.2e-18 95.1 88 53.4
Solyc08g065490.3 Solanum lycopersicum HOM05D000575 ORTHO05D004448 4.2e-18 95.1 88 56.8
Nn1g01942 Nelumbo nucifera HOM05D000575 ORTHO05D004448 5.5e-18 94.7 89 55.1
Nitab4.5_0000738g0140 Nicotiana tabacum HOM05D000575 ORTHO05D004448 5.5e-18 94.7 88 56.8
TWI63G1518 Tripterygium wilfordii HOM05D000575 ORTHO05D004448 5.5e-18 94.7 88 56.8
Hma1.2p1_2451F.1_g322370 Hydrangea macrophylla HOM05D000575 ORTHO05D004448 7.2e-18 94.4 88 55.7
Prupe.3G165800 Prunus persica HOM05D000575 ORTHO05D004448 7.2e-18 94.4 88 55.7
Rhsim07G0143500 Rhododendron simsii HOM05D000575 ORTHO05D004448 7.2e-18 94.4 88 55.7
CSS0015428 Camellia sinensis var. sinensis HOM05D000575 ORTHO05D004448 9.5e-18 94.0 88 56.8
Gohir.A06G087701 Gossypium hirsutum HOM05D000575 ORTHO05D004448 9.5e-18 94.0 88 54.5
HanXRQChr17g0548331 Helianthus annuus HOM05D000575 ORTHO05D004448 9.5e-18 94.0 88 56.8
TAR497G0009 Trochodendron aralioides HOM05D000575 ORTHO05D004448 9.5e-18 94.0 89 51.7
CSS0041003 Camellia sinensis var. sinensis HOM05D000575 ORTHO05D004448 1.2e-17 93.6 89 56.2
PGSC0003DMG400002200 Solanum tuberosum HOM05D000575 ORTHO05D004448 1.2e-17 93.6 88 55.7
Thecc.09G051600 Theobroma cacao HOM05D000575 ORTHO05D004448 1.2e-17 93.6 88 52.3
SalBow2G1573 Salvia bowleyana HOM05D000575 ORTHO05D004448 1.6e-17 93.2 88 54.5
Gorai.009G046400 Gossypium raimondii HOM05D000575 ORTHO05D004448 2.1e-17 92.8 89 53.9
Hma1.2p1_0450F.1_g155670 Hydrangea macrophylla HOM05D000575 ORTHO05D004448 2.1e-17 92.8 88 54.5
QL02p001520 Quercus lobata HOM05D000575 ORTHO05D004448 2.1e-17 92.8 88 53.4
PSO801G0541 Papaver somniferum HOM05D000575 ORTHO05D004448 3.6e-17 92.0 88 56.8
TAR636G3526 Trochodendron aralioides HOM05D000575 ORTHO05D004448 3.6e-17 92.0 89 51.7
Migut.A00148 Erythranthe guttata HOM05D000575 ORTHO05D004448 4.7e-17 91.7 88 55.7
PSO339G6273 Papaver somniferum HOM05D000575 ORTHO05D004448 4.7e-17 91.7 88 55.7
Phvul.002G313300 Phaseolus vulgaris HOM05D000575 ORTHO05D015429 4.7e-17 91.7 79 59.5
Gohir.D05G045200 Gossypium hirsutum HOM05D000575 ORTHO05D004448 6.1e-17 91.3 89 53.9
Lj8C553T0 Lonicera japonica HOM05D000575 ORTHO05D004448 8.0e-17 90.9 88 53.4
Medtr7g078175 Medicago truncatula HOM05D000575 ORTHO05D034198 8.0e-17 90.9 66 71.2
PGR142G3713 Punica granatum HOM05D000575 ORTHO05D004448 8.0e-17 90.9 88 52.3
ECA246G5031 Erigeron canadensis HOM05D000575 ORTHO05D002277 1.0e-16 90.5 88 54.5
COL.COLO4_21032 Corchorus olitorius HOM05D000575 ORTHO05D004448 1.4e-16 90.1 88 52.3
Duzib187G1840 Durio zibethinus HOM05D000575 ORTHO05D004448 1.4e-16 90.1 88 52.3
Lj8C555T0 Lonicera japonica HOM05D000575 ORTHO05D004448 1.4e-16 90.1 88 53.4
Oeu036346.2 Olea europaea HOM05D000575 ORTHO05D004448 1.4e-16 90.1 87 54.0
RcHm_v2.0_Chr7g0222651 Rosa chinensis HOM05D000575 ORTHO05D004448 1.8e-16 89.7 88 53.4
Thecc.09G051800 Theobroma cacao HOM05D000575 ORTHO05D015429 1.8e-16 89.7 87 52.9
Cc00_g19170 Coffea canephora HOM05D000575 ORTHO05D004448 2.3e-16 89.4 88 53.4
CANSAT35G0503 Cannabis sativa HOM05D000575 ORTHO05D004448 3.0e-16 89.0 88 51.1
Nitab4.5_0000359g0010 Nicotiana tabacum HOM05D000575 ORTHO05D004448 3.0e-16 89.0 87 51.7
Peaxi162Scf00436g00824 Petunia axillaris HOM05D000575 ORTHO05D004448 3.0e-16 89.0 88 52.3
Lj7C9T4 Lonicera japonica HOM05D000575 ORTHO05D004448 4.0e-16 88.6 88 53.4
FAN03G0013 Fragaria x ananassa HOM05D000575 ORTHO05D004448 5.2e-16 88.2 88 52.3
Gohir.A05G043600 Gossypium hirsutum HOM05D000575 ORTHO05D004448 5.2e-16 88.2 89 52.8
SGA_v2.0_scaffold5G02628 Striga asiatica HOM05D000575 ORTHO05D004448 5.2e-16 88.2 88 53.4
CsaV3_4G007440 Cucumis sativus L. HOM05D000575 ORTHO05D004448 6.8e-16 87.8 88 50.0
ClCG07G001670 Citrullus lanatus HOM05D000575 ORTHO05D004448 8.9e-16 87.4 88 51.1
HanXRQChr15g0475391 Helianthus annuus HOM05D000575 ORTHO05D004448 8.9e-16 87.4 89 53.9
Peaxi162Scf00064g01624 Petunia axillaris HOM05D000575 ORTHO05D004448 8.9e-16 87.4 90 53.3
Sed0025809 Sechium edule HOM05D000575 ORTHO05D004448 8.9e-16 87.4 88 51.1
ClCG07G010870 Citrullus lanatus HOM05D000575 ORTHO05D004448 1.2e-15 87.0 88 51.1
DCAR_000791 Daucus carota HOM05D000575 ORTHO05D004448 1.2e-15 87.0 89 49.4
MSTRG.25941 Avicennia marina HOM05D000575 ORTHO05D004448 1.5e-15 86.7 88 53.4
FAN01G2004 Fragaria x ananassa HOM05D000575 ORTHO05D004448 1.5e-15 86.7 88 51.1
Nitab4.5_0001179g0030 Nicotiana tabacum HOM05D000575 ORTHO05D004448 1.5e-15 86.7 87 50.6
Sabra06G0180700 Salix brachista HOM05D000575 ORTHO05D004448 1.5e-15 86.7 77 58.4
Hund19471 Selenicereus undatus HOM05D000575 ORTHO05D004448 1.5e-15 86.7 88 50.0
MELO3C016197.2 Cucumis melo HOM05D000575 ORTHO05D004448 2.0e-15 86.3 88 51.1
FvH4_7g07540 Fragaria vesca HOM05D000575 ORTHO05D004448 2.0e-15 86.3 88 51.1
FAN06G3927 Fragaria x ananassa HOM05D000575 ORTHO05D004448 2.0e-15 86.3 88 51.1
FAN10G1790 Fragaria x ananassa HOM05D000575 ORTHO05D004448 2.0e-15 86.3 88 51.1
EL10Ac2g03923 Beta vulgaris HOM05D000575 ORTHO05D004448 2.6e-15 85.9 88 47.7
PSO210G7801 Papaver somniferum HOM05D000575 ORTHO05D004448 2.6e-15 85.9 88 52.3
DCAR_004443 Daucus carota HOM05D000575 ORTHO05D004448 3.4e-15 85.5 89 49.4
AUR62009177 Chenopodium quinoa HOM05D000575 ORTHO05D004448 4.4e-15 85.1 88 47.7
C01p06500 Brassica napus HOM05D000746 ORTHO05D000573 5.7e-15 84.7 109 45.0
MBI04_g06215_MAGBIO Magnolia biondii HOM05D000575 ORTHO05D004448 5.7e-15 84.7 88 50.0
Dinv23425 Davidia involucrata HOM05D000575 ORTHO05D004448 7.5e-15 84.3 77 55.8
Carub.0007s0806 Capsella rubella HOM05D000575 ORTHO05D004448 9.8e-15 84.0 87 48.3
AUR62022049 Chenopodium quinoa HOM05D000575 ORTHO05D004448 9.8e-15 84.0 88 46.6
Rhsim11G0046100 Rhododendron simsii HOM05D000575 ORTHO05D004448 2.2e-14 82.8 81 55.6
Lsat_1_v5_gn_5_152721 Lactuca sativa HOM05D000575 ORTHO05D004448 3.7e-14 82.0 89 50.6
Ah.10g034500 Amaranthus hybridus HOM05D000575 ORTHO05D004448 4.9e-14 81.6 88 47.7
BcaB03g12748 Brassica carinata HOM05D000575 ORTHO05D004448 4.9e-14 81.6 87 48.3
A01p05880 Brassica napus HOM05D000746 ORTHO05D000573 4.9e-14 81.6 87 48.3
BraA01t00555Z Brassica rapa HOM05D000746 ORTHO05D000573 4.9e-14 81.6 87 48.3
Lsat_1_v5_gn_5_158061 Lactuca sativa HOM05D000575 ORTHO05D004448 4.9e-14 81.6 89 50.6
BolC1t00644H Brassica oleracea HOM05D000746 ORTHO05D000573 6.3e-14 81.3 87 48.3
Thhalv10024908m.g Eutrema salsugineum HOM05D000575 ORTHO05D004448 6.3e-14 81.3 87 48.3
Lsat_1_v5_gn_3_26361 Lactuca sativa HOM05D000575 ORTHO05D004448 8.3e-14 80.9 89 50.6
BcaC01g01020 Brassica carinata HOM05D000575 ORTHO05D004448 1.1e-13 80.5 87 48.3
BcaC09g52041 Brassica carinata HOM05D000575 ORTHO05D004448 1.1e-13 80.5 86 48.8
A08p18160 Brassica napus HOM05D000575 ORTHO05D004448 1.1e-13 80.5 87 48.3
C03p87320 Brassica napus HOM05D000575 ORTHO05D004448 1.1e-13 80.5 87 48.3
BolC3t21032H Brassica oleracea HOM05D000575 ORTHO05D004448 1.1e-13 80.5 87 48.3
Thhalv10024909m.g Eutrema salsugineum HOM05D000575 ORTHO05D004448 1.1e-13 80.5 87 47.1
BraA08t33769Z Brassica rapa HOM05D000575 ORTHO05D004448 1.4e-13 80.1 87 48.3
Sp7g30290 Schrenkiella parvula HOM05D000575 ORTHO05D004448 1.4e-13 80.1 87 48.3
THA.LOC104823505 Tarenaya hassleriana HOM05D000575 ORTHO05D004448 1.8e-13 79.7 88 47.7
AT4G32520 Arabidopsis thaliana HOM05D000575 ORTHO05D004448 3.2e-13 79.0 86 47.7
AL7G19290 Arabidopsis lyrata HOM05D000575 ORTHO05D004448 5.4e-13 78.2 87 47.1
QL93p0869_0065 Quercus lobata HOM05D000575 ORTHO05D015429 1.2e-12 77.0 75 53.3
QL04p066053 Quercus lobata HOM05D000176 ORTHO05D000106 1.6e-12 76.6 75 53.3
QL12p023387 Quercus lobata HOM05D000575 ORTHO05D015429 1.6e-12 76.6 75 53.3
QL93p2009_0008 Quercus lobata HOM05D002775 ORTHO05D003262 1.6e-12 76.6 75 53.3
CARHR240440 Cardamine hirsuta HOM05D000575 ORTHO05D004448 2.0e-12 76.3 89 44.9
QL02p065562 Quercus lobata HOM05D000575 ORTHO05D015429 3.5e-12 75.5 75 52.0
QL08p016926 Quercus lobata HOM05D000575 ORTHO05D015429 3.5e-12 75.5 75 52.0
QL08p057033 Quercus lobata HOM05D000575 ORTHO05D015429 3.5e-12 75.5 75 52.0
QL09p008289 Quercus lobata HOM05D001043 ORTHO05D000106 5.9e-12 74.7 75 52.0
QL93p1879_0003 Quercus lobata HOM05D000575 ORTHO05D015429 5.9e-12 74.7 75 52.0
Aa31LG10G10660 Aethionema arabicum HOM05D000575 ORTHO05D004448 2.3e-11 72.8 81 45.7
SEGI_30444 Sequoiadendron giganteum HOM05D000575 ORTHO05D004448 2.9e-11 72.4 89 42.7
CDE03G0464 Ceratophyllum demersum HOM05D000575 ORTHO05D004448 3.9e-11 72.0 81 46.9
QL09p023356 Quercus lobata HOM05D000575 ORTHO05D015429 5.0e-11 71.6 76 47.4
CDE04G3194 Ceratophyllum demersum HOM05D000575 ORTHO05D004448 6.6e-11 71.2 81 45.7
SEGI_27254 Sequoiadendron giganteum HOM05D000575 ORTHO05D004448 8.6e-11 70.9 89 41.6
Mapoly0015s0052 Marchantia polymorpha HOM05D000575 ORTHO05D004448 1.6e-09 66.6 89 38.2
Cfa021383 Carpinus fangiana HOM05D000575 ORTHO05D034198 1.4e-08 63.5 50 64.0
Pp3c13_1080 Physcomitrium patens HOM05D000575 ORTHO05D004448 4.0e-08 62.0 89 34.8
Pp3c13_1100 Physcomitrium patens HOM05D000575 ORTHO05D004448 4.0e-08 62.0 89 34.8
SMO147G0122 Selaginella moellendorffii HOM05D000575 ORTHO05D004448 4.0e-08 62.0 89 36.0
ATR0723G081 Amborella trichopoda HOM05D000575 ORTHO05D004448 1.2e-07 60.5 80 45.0
arahy.Tifrunner.gnm1.ann1.01R8FJ Arachis hypogaea HOM05D000575 ORTHO05D015429 2.6e-07 59.3 63 47.6
CBR_g12373 Chara braunii HOM05D000575 ORTHO05D004448 7.5e-07 57.8 67 41.8
Cre09.g411900 Chlamydomonas reinhardtii HOM05D000575 ORTHO05D004448 2.2e-06 56.2 93 38.7
Ciclev10000875m.g Citrus clementina HOM05D000575 ORTHO05D003041 3.7e-06 55.5 89 36.0
Glyma.14G184500 Glycine max HOM05D000575 ORTHO05D003041 3.7e-06 55.5 89 33.7


User provided reference genes

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