Gene: AT4G32520

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G32520
  • Transcript Identifier AT4G32520.1
  • Gene Type Coding gene
  • Location Chr4 : 15689642-15692334 : negative

Gene Family Information

  • ID HOM05D000575
  • #Genes/#Species 966/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G32520.1
  • symbol SHM3
  • Alias AtSHMT3,SERINE HYDROXYMETHYLTRANSFERASE 3
  • uniprot Q94JQ3

Descriptions

  • Description serine hydroxymethyltransferase 3
  • Computational description serine hydroxymethyltransferase 3 (SHM3); FUNCTIONS IN: glycine hydroxymethyltransferase activity; INVOLVED IN: glycine metabolic process, L-serine metabolic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Serine hydroxymethyltransferase, pyridoxal phosphate binding site (InterPro:IPR019798), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Serine hydroxymethyltransferase (InterPro:IPR001085); BEST Arabidopsis thaliana protein match is: serine transhydroxymethyltransferase 1 (TAIR:AT4G37930.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006730
IEA
GOA Databaseone-carbon metabolic process
GO:0006730
IBA
Gene Ontologyone-carbon metabolic process1
GO:0019264
IEA
GOA Databaseglycine biosynthetic process from serine
GO:0019264
IBA
Gene Ontologyglycine biosynthetic process from serine1
GO:0019264
IEA
InterProglycine biosynthetic process from serine
GO:0035999
IEA
Gene Ontologytetrahydrofolate interconversion
GO:0035999
IEA
InterProtetrahydrofolate interconversion
GO:0046653
IBA
Gene Ontologytetrahydrofolate metabolic process1
GO:0006565
IBA
Gene OntologyL-serine catabolic process1
GO:0046655
IBA
Gene Ontologyfolic acid metabolic process1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity
GO:0030170
IEA
GOA Databasepyridoxal phosphate binding
GO:0030170
IBA
Gene Ontologypyridoxal phosphate binding1
GO:0030170
IEA
InterPropyridoxal phosphate binding
GO:0004372
IEA
GOA Databaseglycine hydroxymethyltransferase activity
GO:0004372
IDA
IBA
Gene Ontologyglycine hydroxymethyltransferase activity1 2
GO:0004372
IEA
InterProglycine hydroxymethyltransferase activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0070905
IBA
Gene Ontologyserine binding1
GO:0050897
IBA
Gene Ontologycobalt ion binding1
GO:0008270
IBA
Gene Ontologyzinc ion binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
IDA
IEA
GOA Databasechloroplast
GO:0009507
HDA
Gene Ontologychloroplast3
GO:0009570
IDA
GOA Databasechloroplast stroma
GO:0009570
HDA
Gene Ontologychloroplast stroma4
GO:0009536
IEA
GOA Databaseplastid
GO:0009536
IDA
Gene Ontologyplastid2
GO:0005829
RCA
Gene Ontologycytosol5
GO:0005886
HDA
Gene Ontologyplasma membrane6
GO:0005737
ISM, IBA
Gene Ontologycytoplasm1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001085 Serine hydroxymethyltransferase
IPR015421 Pyridoxal phosphate-dependent transferase, major domain
IPR039429 Serine hydroxymethyltransferase-like domain
IPR015424 Pyridoxal phosphate-dependent transferase
IPR015422 Pyridoxal phosphate-dependent transferase, small domain
Mapman id Description
1.3.5 Photosynthesis.photorespiration.serine hydroxymethyltransferase (SHM)