Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0154s0022 Marchantia polymorpha HOM05D003576 ORTHO05D004124 3.7e-188 661.4 329 100.0
SMO356G0089 Selaginella moellendorffii HOM05D003576 ORTHO05D004124 3.0e-121 439.1 327 66.1
AagrBONN_evm.TU.Sc2ySwM_228.4941 Anthoceros agrestis HOM05D003576 ORTHO05D004124 9.5e-120 434.1 286 75.2
Pp3c10_5620 Physcomitrium patens HOM05D003576 ORTHO05D004124 1.6e-114 416.8 369 61.0
Aqoxy1G02388 Aquilegia oxysepala HOM05D003576 ORTHO05D004124 1.2e-111 407.1 316 63.6
Nn2g13102 Nelumbo nucifera HOM05D003576 ORTHO05D004124 1.1e-110 404.1 319 65.5
Glyma.02G074100 Glycine max HOM05D003576 ORTHO05D004124 1.8e-110 403.3 328 63.4
Phvul.004G083500 Phaseolus vulgaris HOM05D003576 ORTHO05D004124 1.8e-110 403.3 328 63.1
Lj3A882G53 Lonicera japonica HOM05D003576 ORTHO05D004124 5.2e-110 401.7 319 63.9
arahy.Tifrunner.gnm1.ann1.33B581 Arachis hypogaea HOM05D003576 ORTHO05D004124 3.4e-109 399.1 321 63.2
Dinv36441 Davidia involucrata HOM05D003576 ORTHO05D004124 3.4e-109 399.1 331 62.5
AUR62018250 Chenopodium quinoa HOM05D003576 ORTHO05D004124 5.8e-109 398.3 331 61.6
arahy.Tifrunner.gnm1.ann1.THE0XD Arachis hypogaea HOM05D003576 ORTHO05D004124 9.9e-109 397.5 321 62.9
DCAR_019104 Daucus carota HOM05D003576 ORTHO05D004124 2.2e-108 396.4 327 62.4
Glyma.16G155600 Glycine max HOM05D003576 ORTHO05D004124 2.9e-108 396.0 328 62.2
TAR633G2490 Trochodendron aralioides HOM05D003576 ORTHO05D004124 3.8e-108 395.6 316 64.2
Ciclev10032124m.g Citrus clementina HOM05D003576 ORTHO05D004124 8.4e-108 394.4 326 61.7
Lalb_Chr01g0010001 Lupinus albus HOM05D003576 ORTHO05D004124 8.4e-108 394.4 324 62.3
HPP92_020748 Vanilla planifolia HOM05D003576 ORTHO05D004124 8.4e-108 394.4 324 61.4
RcHm_v2.0_Chr6g0284661 Rosa chinensis HOM05D003576 ORTHO05D004124 1.9e-107 393.3 331 59.8
FvH4_2g18840 Fragaria vesca HOM05D003576 ORTHO05D004124 2.4e-107 392.9 331 60.1
CDE04G0074 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 3.2e-107 392.5 320 62.5
CSS0018972 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 5.4e-107 391.7 331 62.2
CSS0040774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 5.4e-107 391.7 331 62.2
Cfa021515 Carpinus fangiana HOM05D003576 ORTHO05D004124 5.4e-107 391.7 326 61.3
Migut.F01985 Erythranthe guttata HOM05D003576 ORTHO05D004124 5.4e-107 391.7 328 59.8
Gohir.D10G214000 Gossypium hirsutum HOM05D003576 ORTHO05D004124 5.4e-107 391.7 331 61.0
Nitab4.5_0000476g0030 Nicotiana tabacum HOM05D003576 ORTHO05D004124 5.4e-107 391.7 331 62.2
ClCG08G007510 Citrullus lanatus HOM05D003576 ORTHO05D004124 7.1e-107 391.3 326 60.1
Gohir.A10G205700 Gossypium hirsutum HOM05D003576 ORTHO05D004124 7.1e-107 391.3 331 60.7
Gorai.011G239400 Gossypium raimondii HOM05D003576 ORTHO05D004124 7.1e-107 391.3 331 60.7
Lalb_Chr03g0035911 Lupinus albus HOM05D003576 ORTHO05D004124 7.1e-107 391.3 324 61.1
ATR0048G008 Amborella trichopoda HOM05D003576 ORTHO05D004124 9.3e-107 391.0 319 64.6
Atru.chr12.780 Acer truncatum HOM05D003576 ORTHO05D004124 2.1e-106 389.8 324 60.5
Thecc.10G074000 Theobroma cacao HOM05D003576 ORTHO05D004124 2.7e-106 389.4 331 60.4
Zm00001eb273430 Zea mays HOM05D003576 ORTHO05D004124 2.7e-106 389.4 324 62.3
Manes.07G100300 Manihot esculenta HOM05D003576 ORTHO05D004124 6.0e-106 388.3 316 63.3
Medtr6g033535 Medicago truncatula HOM05D003576 ORTHO05D004124 6.0e-106 388.3 319 62.7
Pp3c1_22690 Physcomitrium patens HOM05D003576 ORTHO05D004124 6.0e-106 388.3 268 70.5
CsaV3_6G036430 Cucumis sativus L. HOM05D003576 ORTHO05D004124 7.8e-106 387.9 326 59.8
MD07G1174600 Malus domestica HOM05D003576 ORTHO05D004124 1.0e-105 387.5 331 59.8
PSO339G2752 Papaver somniferum HOM05D003576 ORTHO05D004124 1.0e-105 387.5 316 60.4
vmacro07071 Vaccinium macrocarpon HOM05D003576 ORTHO05D004124 1.0e-105 387.5 331 60.4
PSO384G2156 Papaver somniferum HOM05D003576 ORTHO05D004124 1.3e-105 387.1 316 60.1
Hma1.2p1_0382F.1_g140100 Hydrangea macrophylla HOM05D003576 ORTHO05D004124 1.7e-105 386.7 331 61.6
Atru.chr12.756 Acer truncatum HOM05D003576 ORTHO05D004124 2.3e-105 386.3 325 60.3
Sc20g0001840 Simmondsia chinensis HOM05D003576 ORTHO05D004124 2.3e-105 386.3 319 61.8
Solyc05g056110.3 Solanum lycopersicum HOM05D003576 ORTHO05D004124 2.3e-105 386.3 331 61.3
Sopen05g034520 Solanum pennellii HOM05D003576 ORTHO05D004124 2.3e-105 386.3 331 61.3
Actinidia38283 Actinidia chinensis HOM05D003576 ORTHO05D004124 3.0e-105 386.0 326 59.2
Eucgr.J01085 Eucalyptus grandis HOM05D003576 ORTHO05D004124 3.0e-105 386.0 319 62.1
Prupe.2G213500 Prunus persica HOM05D003576 ORTHO05D004124 3.0e-105 386.0 331 60.4
QL08p055786 Quercus lobata HOM05D003576 ORTHO05D004124 3.0e-105 386.0 321 60.7
CAN.G694.86 Capsicum annuum HOM05D003576 ORTHO05D004124 5.1e-105 385.2 331 60.1
Pp3c2_16830 Physcomitrium patens HOM05D003576 ORTHO05D004124 5.1e-105 385.2 278 68.7
Lj2g0011631 Lotus japonicus HOM05D003576 ORTHO05D004124 6.6e-105 384.8 320 61.9
Sed0006763 Sechium edule HOM05D003576 ORTHO05D004124 1.5e-104 383.6 324 59.6
THA.LOC104827300 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 1.5e-104 383.6 326 59.2
EL10Ac2g03301 Beta vulgaris HOM05D003576 ORTHO05D004124 3.3e-104 382.5 331 59.2
Cc02_g11340 Coffea canephora HOM05D003576 ORTHO05D004124 3.3e-104 382.5 324 60.2
Rhsim03G0120500 Rhododendron simsii HOM05D003576 ORTHO05D004124 3.3e-104 382.5 333 61.0
TPR.G36712 Trifolium pratense HOM05D003576 ORTHO05D004124 3.3e-104 382.5 319 61.8
MD01G1108400 Malus domestica HOM05D003576 ORTHO05D004124 7.3e-104 381.3 331 58.9
PSO063G6153 Papaver somniferum HOM05D003576 ORTHO05D004124 7.3e-104 381.3 251 72.9
PGR142G1591 Punica granatum HOM05D003576 ORTHO05D004124 7.3e-104 381.3 331 60.1
CANSAT56G0320 Cannabis sativa HOM05D003576 ORTHO05D004124 1.3e-103 380.6 331 58.3
MSTRG.374 Avicennia marina HOM05D003576 ORTHO05D004124 2.8e-103 379.4 323 60.1
Sabra08G0027100 Salix brachista HOM05D003576 ORTHO05D004124 2.8e-103 379.4 326 58.6
GSVIVG01016273001 Vitis vinifera HOM05D003576 ORTHO05D004124 4.8e-103 378.6 331 59.5
Potri.008G039500 Populus trichocarpa HOM05D003576 ORTHO05D004124 1.1e-102 377.5 328 60.1
ClCG05G021030 Citrullus lanatus HOM05D003576 ORTHO05D004124 2.4e-102 376.3 316 60.4
Potri.010G222800 Populus trichocarpa HOM05D003576 ORTHO05D004124 3.1e-102 375.9 316 61.4
FAN15G0532 Fragaria x ananassa HOM05D003576 ORTHO05D004124 4.0e-102 375.6 342 57.3
Sabra10G0172200 Salix brachista HOM05D003576 ORTHO05D004124 4.0e-102 375.6 326 59.2
Sed0008938 Sechium edule HOM05D003576 ORTHO05D004124 5.3e-102 375.2 319 59.9
TWI15G0705 Tripterygium wilfordii HOM05D003576 ORTHO05D004124 9.0e-102 374.4 316 60.1
ECA238G1405 Erigeron canadensis HOM05D003576 ORTHO05D004124 1.2e-101 374.0 319 58.9
CsaV3_5G036280 Cucumis sativus L. HOM05D003576 ORTHO05D004124 2.0e-101 373.2 319 59.6
Os02g0805900 Oryza sativa ssp. japonica HOM05D003576 ORTHO05D004124 2.6e-101 372.9 324 60.5
ECA232G3526 Erigeron canadensis HOM05D003576 ORTHO05D004124 3.4e-101 372.5 316 59.2
BcaNung06333 Brassica carinata HOM05D003576 ORTHO05D004124 4.5e-101 372.1 331 59.5
HanXRQChr15g0496951 Helianthus annuus HOM05D003576 ORTHO05D004124 7.6e-101 371.3 318 59.1
CiPaw.02G173900 Carya illinoinensis HOM05D003576 ORTHO05D004124 9.9e-101 370.9 331 58.6
BcaNung01897 Brassica carinata HOM05D003576 ORTHO05D004124 2.2e-100 369.8 331 59.2
AUR62037754 Chenopodium quinoa HOM05D003576 ORTHO05D004124 3.8e-100 369.0 391 52.7
C02p06240 Brassica napus HOM05D003576 ORTHO05D004124 4.9e-100 368.6 330 58.8
BolC2t06566H Brassica oleracea HOM05D003576 ORTHO05D004124 3.2e-99 365.9 331 58.6
FAN24G3530 Fragaria x ananassa HOM05D003576 ORTHO05D004124 9.3e-99 364.4 331 57.1
BcaB01g05348 Brassica carinata HOM05D003576 ORTHO05D004124 1.6e-98 363.6 326 56.7
Peaxi162Scf01175g00019 Petunia axillaris HOM05D003576 ORTHO05D004124 1.6e-98 363.6 331 59.5
A02p02030 Brassica napus HOM05D003576 ORTHO05D004124 2.1e-98 363.2 331 58.0
SalBow3G2401 Salvia bowleyana HOM05D003576 ORTHO05D004124 4.6e-98 362.1 363 54.5
BcaC04g19105 Brassica carinata HOM05D003576 ORTHO05D004124 6.0e-98 361.7 330 57.9
Sp6g30460 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.0e-97 360.9 335 56.1
THA.LOC104809882 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 1.3e-97 360.5 326 57.4
Thhalv10014094m.g Eutrema salsugineum HOM05D003576 ORTHO05D004124 3.0e-97 359.4 336 56.0
Lsat_1_v5_gn_9_69180 Lactuca sativa HOM05D003576 ORTHO05D004124 3.0e-97 359.4 317 57.4
Nitab4.5_0009985g0010 Nicotiana tabacum HOM05D003576 ORTHO05D004124 1.1e-96 357.5 255 69.8
PSO339G5183 Papaver somniferum HOM05D003576 ORTHO05D004124 1.5e-96 357.1 225 76.4
BcaC04g19106 Brassica carinata HOM05D003576 ORTHO05D004124 4.3e-96 355.5 330 57.0
Dinv31323 Davidia involucrata HOM05D003576 ORTHO05D004124 9.6e-96 354.4 252 67.9
Carub.0006s1173 Capsella rubella HOM05D003576 ORTHO05D004124 1.3e-95 354.0 273 64.8
BolC9t59197H Brassica oleracea HOM05D003576 ORTHO05D004124 4.8e-95 352.1 330 57.0
C09p63530 Brassica napus HOM05D003576 ORTHO05D004124 8.1e-95 351.3 330 56.7
AL6G24180 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 1.1e-94 350.9 273 64.1
BcaNung01144 Brassica carinata HOM05D003576 ORTHO05D004124 1.1e-94 350.9 331 57.4
Aa31LG11G7770 Aethionema arabicum HOM05D003576 ORTHO05D004124 2.4e-94 349.7 369 50.7
CARHR199870 Cardamine hirsuta HOM05D003576 ORTHO05D004124 3.1e-94 349.4 288 63.2
CBR_g38931 Chara braunii HOM05D003576 ORTHO05D004124 9.0e-94 347.8 237 68.4
unitig_699.g19224 Utricularia gibba HOM05D003576 ORTHO05D004124 1.2e-93 347.4 324 57.1
AT5G13570 Arabidopsis thaliana HOM05D003576 ORTHO05D004124 3.4e-93 345.9 303 59.7
A10p24700 Brassica napus HOM05D003576 ORTHO05D004124 5.8e-93 345.1 330 55.5
BraA10t44533Z Brassica rapa HOM05D003576 ORTHO05D004124 8.4e-92 341.3 330 55.2
Migut.F01761 Erythranthe guttata HOM05D003576 ORTHO05D004124 1.8e-89 333.6 259 62.9
MELO3C012428.2 Cucumis melo HOM05D003576 ORTHO05D004124 6.7e-89 331.6 228 70.6
CiPaw.01G272700 Carya illinoinensis HOM05D003576 ORTHO05D004124 2.8e-87 326.2 258 64.0
SGA_v2.0_scaffold100G29594 Striga asiatica HOM05D003576 ORTHO05D004124 3.7e-87 325.9 341 52.8
Actinidia06773 Actinidia chinensis HOM05D003576 ORTHO05D004124 6.2e-87 325.1 230 70.0
PGR044G0669 Punica granatum HOM05D003576 ORTHO05D004124 1.2e-85 320.9 319 53.9
BcaB06g27487 Brassica carinata HOM05D003576 ORTHO05D004124 3.8e-84 315.8 260 58.8
BraA04t16990Z Brassica rapa HOM05D003576 ORTHO05D004124 4.9e-84 315.5 268 57.5
Duzib114G0196 Durio zibethinus HOM05D003576 ORTHO05D004124 6.5e-84 315.1 331 54.1
A04p13320 Brassica napus HOM05D003576 ORTHO05D004124 1.1e-83 314.3 268 57.8
SHI19520 Sapria himalayana HOM05D003576 ORTHO05D004124 2.5e-83 313.2 304 52.0
COL.COLO4_23659 Corchorus olitorius HOM05D003576 ORTHO05D004124 5.5e-83 312.0 240 67.1
C04p47100 Brassica napus HOM05D003576 ORTHO05D004124 9.3e-83 311.2 268 56.3
BolC4t26304H Brassica oleracea HOM05D003576 ORTHO05D004124 9.3e-83 311.2 269 56.5
BcaC04g19104 Brassica carinata HOM05D003576 ORTHO05D004124 2.7e-82 309.7 308 54.2
Haze_16891 Corylus avellana HOM05D003576 ORTHO05D004124 2.7e-82 309.7 349 49.9
Ah.10g032640 Amaranthus hybridus HOM05D003576 ORTHO05D004124 1.0e-81 307.8 332 52.4
MELO3C019797.2 Cucumis melo HOM05D003576 ORTHO05D004124 4.3e-80 302.4 199 71.4
Cpa.g.sc53.83 Carica papaya HOM05D003576 ORTHO05D004124 6.9e-78 295.0 351 48.1
BcaB06g27496 Brassica carinata HOM05D003576 ORTHO05D004124 9.0e-78 294.7 254 57.9
BraA04t16999Z Brassica rapa HOM05D003576 ORTHO05D004124 1.4e-75 287.3 256 55.5
BraA04t16993Z Brassica rapa HOM05D003576 ORTHO05D004124 9.4e-75 284.6 256 54.3
A04p13360 Brassica napus HOM05D003576 ORTHO05D004124 1.6e-74 283.9 238 57.1
C04p47110 Brassica napus HOM05D003576 ORTHO05D004124 3.6e-74 282.7 238 57.6
BraA04t16996Z Brassica rapa HOM05D003576 ORTHO05D004124 4.6e-74 282.3 238 56.7
BraA04t16997Z Brassica rapa HOM05D003576 ORTHO05D004124 4.6e-74 282.3 258 55.0
BolC4t26305H Brassica oleracea HOM05D003576 ORTHO05D004124 6.7e-73 278.5 238 56.7
BolC4t26310H Brassica oleracea HOM05D003576 ORTHO05D004124 6.7e-73 278.5 238 56.7
BraA04t16991Z Brassica rapa HOM05D003576 ORTHO05D004124 4.3e-72 275.8 270 51.5
A04p13340 Brassica napus HOM05D003576 ORTHO05D004124 5.7e-72 275.4 238 55.9
A04p13380 Brassica napus HOM05D003576 ORTHO05D004124 5.7e-72 275.4 238 55.9
A04p13410 Brassica napus HOM05D003576 ORTHO05D004124 5.7e-72 275.4 238 55.9
BcaB06g27493 Brassica carinata HOM05D003576 ORTHO05D004124 6.9e-70 268.5 252 54.8
TAR636G0323 Trochodendron aralioides HOM05D003576 ORTHO05D004124 4.5e-69 265.8 242 57.4
CBR_g39890 Chara braunii HOM05D003576 ORTHO05D004124 4.8e-63 245.7 169 66.3
Zm00001eb290030 Zea mays HOM05D003576 ORTHO05D004124 3.1e-62 243.0 146 76.0
BcaB06g27489 Brassica carinata HOM05D003576 ORTHO05D004124 7.7e-61 238.4 203 61.1
Zm00001eb366000 Zea mays HOM05D003576 ORTHO05D004124 1.3e-60 237.7 146 75.3
BcaB06g27491 Brassica carinata HOM05D003576 ORTHO05D004124 2.9e-60 236.5 179 63.7
CDE03G0119 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 5.5e-59 232.3 151 71.5
Ah.16g106400 Amaranthus hybridus HOM05D003576 ORTHO05D004124 2.0e-56 223.8 327 43.7
FAN15G1487 Fragaria x ananassa HOM05D003576 ORTHO05D004124 3.3e-56 223.0 165 66.7
CDE03G0459 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 1.7e-55 220.7 155 71.0
Sp7g03020 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.8e-54 217.2 255 47.1
PRCOL_00003742 Prasinoderma coloniale HOM05D003576 ORTHO05D004124 1.2e-53 214.5 206 51.0
Ca_27771_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 1.6e-53 214.2 211 55.9
Cfa023847 Carpinus fangiana HOM05D003576 ORTHO05D004124 1.3e-52 211.1 263 43.0
Psat1g000080 Pisum sativum HOM05D003576 ORTHO05D004124 6.5e-52 208.8 215 53.0
C03p07100 Brassica napus HOM05D002836 ORTHO05D003107 3.2e-51 206.5 328 39.0
MCO14G142 Micromonas commoda HOM05D003576 ORTHO05D004124 1.8e-49 200.7 242 44.2
BolC3t13209H Brassica oleracea HOM05D003576 ORTHO05D004124 1.2e-48 198.0 332 39.2
Sp3g29060 Schrenkiella parvula HOM05D003576 ORTHO05D004124 5.3e-46 189.1 236 44.9
Cre07.g344850 Chlamydomonas reinhardtii HOM05D003576 ORTHO05D004124 4.5e-45 186.0 242 40.9
BolC4t26308H Brassica oleracea HOM05D003576 ORTHO05D004124 3.8e-44 183.0 133 62.4
A04p13390 Brassica napus HOM05D003576 ORTHO05D004124 8.5e-44 181.8 130 63.1
SEGI_06233 Sequoiadendron giganteum HOM05D003576 ORTHO05D004124 1.2e-42 177.9 261 40.6
Ca_07562_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 1.6e-37 161.0 188 50.5
Psat1g098680 Pisum sativum HOM05D003576 ORTHO05D004124 1.6e-37 161.0 179 49.2
CSS0030842 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 5.2e-33 146.0 137 56.2
Zm00001eb305720 Zea mays HOM05D003576 ORTHO05D004124 3.4e-32 143.3 77 81.8
TAR636G2201 Trochodendron aralioides HOM05D003576 ORTHO05D004124 7.5e-32 142.1 108 67.6
Sp7g01550 Schrenkiella parvula HOM05D003576 ORTHO05D004124 4.5e-29 132.9 236 35.6
CSS0009257 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 2.1e-26 124.0 84 72.6
AL4G23990 Arabidopsis lyrata HOM05D003576 ORTHO05D004124 8.0e-26 122.1 123 52.8
Oeu017646.1 Olea europaea HOM05D003576 ORTHO05D004124 3.1e-25 120.2 112 52.7
C04p47130 Brassica napus HOM05D003576 ORTHO05D004124 8.3e-23 112.1 90 56.7
CDE03G0152 Ceratophyllum demersum HOM05D003576 ORTHO05D004124 2.4e-22 110.5 151 41.7
Psat1g098640 Pisum sativum HOM05D003576 ORTHO05D004124 2.9e-15 87.0 49 79.6
Sp7g03350 Schrenkiella parvula HOM05D003576 ORTHO05D004124 1.0e-12 78.6 86 46.5
BcaNung01892 Brassica carinata HOM05D003576 ORTHO05D000199 6.8e-09 65.9 54 66.7
CSS0032612 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.5e-08 64.7 51 62.7
CSS0050114 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 1.5e-08 64.7 51 62.7
CSS0046774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 3.4e-08 63.5 51 60.8
CSS0033760 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 9.9e-08 62.0 51 58.8
arahy.Tifrunner.gnm1.ann1.EX6GR6 Arachis hypogaea HOM05D003576 ORTHO05D004124 6.4e-07 59.3 100 38.0


User provided reference genes

Program Settings