Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0140s0012 Marchantia polymorpha HOM05D004820 ORTHO05D005946 9.6e-226 786.6 419 100.0
Pp3c21_19780 Physcomitrium patens HOM05D004820 ORTHO05D005946 6.6e-158 561.2 418 75.1
TAR362G1079 Trochodendron aralioides HOM05D004820 ORTHO05D005946 8.6e-142 507.7 422 66.4
SEGI_11361 Sequoiadendron giganteum HOM05D004820 ORTHO05D005946 2.8e-140 502.7 416 67.3
Nn4g26288 Nelumbo nucifera HOM05D004820 ORTHO05D005946 3.1e-139 499.2 421 65.3
CAN.G590.6 Capsicum annuum HOM05D004820 ORTHO05D005946 1.4e-131 473.8 421 61.8
Atru.chr5.1456 Acer truncatum HOM05D004820 ORTHO05D005946 2.6e-130 469.5 425 61.4
Eucgr.K03365 Eucalyptus grandis HOM05D004820 ORTHO05D005946 4.9e-129 465.3 419 62.5
Glyma.19G157200 Glycine max HOM05D004820 ORTHO05D005946 4.9e-129 465.3 419 60.6
CiPaw.08G106000 Carya illinoinensis HOM05D004820 ORTHO05D005946 1.1e-128 464.2 421 60.8
VMungo1383G2933 Vigna mungo HOM05D004820 ORTHO05D005946 1.1e-128 464.2 415 60.5
Migut.N02046 Erythranthe guttata HOM05D004820 ORTHO05D005946 1.2e-127 460.7 424 60.4
Gohir.D08G075000 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.2e-127 460.7 419 60.4
Manes.01G206900 Manihot esculenta HOM05D004820 ORTHO05D005946 1.6e-127 460.3 418 61.2
Solyc09g065280.4 Solanum lycopersicum HOM05D004820 ORTHO05D005946 1.6e-127 460.3 420 61.4
PSO761G0350 Papaver somniferum HOM05D004820 ORTHO05D005946 1.3e-126 457.2 419 62.1
SGA_v2.0_scaffold81G26015 Striga asiatica HOM05D004820 ORTHO05D005946 1.8e-126 456.8 424 61.3
TWI14G0518 Tripterygium wilfordii HOM05D004820 ORTHO05D005946 2.3e-126 456.4 419 59.2
Glyma.03G155000 Glycine max HOM05D004820 ORTHO05D005946 3.9e-126 455.7 417 60.7
PSO210G1690 Papaver somniferum HOM05D004820 ORTHO05D005946 8.7e-126 454.5 419 61.1
HPP92_018354 Vanilla planifolia HOM05D004820 ORTHO05D005946 3.3e-125 452.6 426 58.9
Ciclev10020348m.g Citrus clementina HOM05D004820 ORTHO05D005946 4.3e-125 452.2 420 60.0
PGR044G0684 Punica granatum HOM05D004820 ORTHO05D005946 4.3e-125 452.2 421 60.8
Gorai.004G216400 Gossypium raimondii HOM05D004820 ORTHO05D005946 5.6e-125 451.8 420 60.2
THA.LOC104815940 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 5.6e-125 451.8 422 61.8
CANSAT25G3765 Cannabis sativa HOM05D004820 ORTHO05D005946 7.4e-125 451.4 422 60.4
TPR.G9917 Trifolium pratense HOM05D004820 ORTHO05D005946 1.6e-124 450.3 416 59.9
MELO3C015826.2 Cucumis melo HOM05D004820 ORTHO05D005946 2.1e-124 449.9 431 59.9
SMO356G0463 Selaginella moellendorffii HOM05D004820 ORTHO05D005946 2.1e-124 449.9 395 65.3
PGSC0003DMG400019362 Solanum tuberosum HOM05D004820 ORTHO05D005946 2.1e-124 449.9 419 60.4
Gohir.A08G186300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 3.7e-124 449.1 420 60.0
Gohir.D08G204400 Gossypium hirsutum HOM05D004820 ORTHO05D005946 4.8e-124 448.7 420 60.0
Lj4g0024215 Lotus japonicus HOM05D004820 ORTHO05D005946 4.8e-124 448.7 415 59.8
Sopen09g027030 Solanum pennellii HOM05D004820 ORTHO05D005946 4.8e-124 448.7 420 61.0
Phvul.005G035400 Phaseolus vulgaris HOM05D004820 ORTHO05D005946 8.1e-124 448.0 416 60.1
CsaV3_7G028060 Cucumis sativus L. HOM05D004820 ORTHO05D005946 1.1e-123 447.6 425 59.3
QL12p021397 Quercus lobata HOM05D004820 ORTHO05D005946 1.1e-123 447.6 420 60.5
THA.LOC104801242 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 1.4e-123 447.2 423 61.0
Ca_08606_v3 Cicer arietinum L. HOM05D004820 ORTHO05D005946 5.3e-123 445.3 415 59.0
Thecc.01G277300 Theobroma cacao HOM05D004820 ORTHO05D005946 5.3e-123 445.3 419 59.9
Sc05g0005630 Simmondsia chinensis HOM05D004820 ORTHO05D005946 1.5e-122 443.7 423 59.1
Cpa.g.sc52.45 Carica papaya HOM05D004820 ORTHO05D005946 2.0e-122 443.4 429 58.5
Medtr7g095000 Medicago truncatula HOM05D004820 ORTHO05D005946 2.0e-122 443.4 415 59.5
arahy.Tifrunner.gnm1.ann1.HALK3W Arachis hypogaea HOM05D004820 ORTHO05D005946 2.6e-122 443.0 440 58.4
Gohir.A08G066300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 2.6e-122 443.0 422 59.2
Cc03_g10020 Coffea canephora HOM05D004820 ORTHO05D005946 3.4e-122 442.6 416 59.4
Oeu041704.1 Olea europaea HOM05D004820 ORTHO05D005946 3.4e-122 442.6 424 59.2
arahy.Tifrunner.gnm1.ann1.JHLY8X Arachis hypogaea HOM05D004820 ORTHO05D005946 5.8e-122 441.8 440 58.2
arahy.Tifrunner.gnm1.ann1.NQ54M2 Arachis hypogaea HOM05D004820 ORTHO05D005946 5.8e-122 441.8 440 58.4
Potri.005G210600 Populus trichocarpa HOM05D004820 ORTHO05D005946 2.9e-121 439.5 423 58.9
Gorai.004G079300 Gossypium raimondii HOM05D004820 ORTHO05D005946 4.9e-121 438.7 420 58.8
Actinidia00769 Actinidia chinensis HOM05D004820 ORTHO05D005946 6.4e-121 438.3 427 59.3
Duzib138G0452 Durio zibethinus HOM05D004820 ORTHO05D005946 8.4e-121 438.0 422 59.0
MD11G1284100 Malus domestica HOM05D004820 ORTHO05D005946 1.4e-120 437.2 422 59.0
Zm00001eb426860 Zea mays HOM05D004820 ORTHO05D005946 1.9e-120 436.8 416 60.3
Lalb_Chr06g0162971 Lupinus albus HOM05D004820 ORTHO05D005946 5.5e-120 435.3 415 59.0
Sabra05G0160800 Salix brachista HOM05D004820 ORTHO05D005946 9.3e-120 434.5 429 58.0
MD03G1263300 Malus domestica HOM05D004820 ORTHO05D005946 1.2e-119 434.1 422 58.8
Aa31LG1G9390 Aethionema arabicum HOM05D004820 ORTHO05D005946 2.1e-119 433.3 432 57.9
Duzib211G0468 Durio zibethinus HOM05D004820 ORTHO05D005946 3.5e-119 432.6 422 59.0
Os07g0571900 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 3.5e-119 432.6 439 57.4
Zm00001eb426810 Zea mays HOM05D004820 ORTHO05D005946 4.6e-119 432.2 412 59.5
Zm00001eb324990 Zea mays HOM05D004820 ORTHO05D005946 7.9e-119 431.4 447 57.3
arahy.Tifrunner.gnm1.ann1.X2D3U2 Arachis hypogaea HOM05D004820 ORTHO05D005946 1.3e-118 430.6 440 57.0
Psat3g064000 Pisum sativum HOM05D004820 ORTHO05D005946 3.0e-118 429.5 415 58.3
AL1G12610 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 1.1e-117 427.6 422 60.2
A09p68340 Brassica napus HOM05D004820 ORTHO05D005946 1.5e-117 427.2 417 59.0
CSS0006431 Camellia sinensis var. sinensis HOM05D004820 ORTHO05D005946 1.9e-117 426.8 402 60.9
Zm00001eb426800 Zea mays HOM05D004820 ORTHO05D005946 2.5e-117 426.4 416 59.4
Sed0001544 Sechium edule HOM05D004820 ORTHO05D005946 3.3e-117 426.0 428 57.5
Zm00001eb426820 Zea mays HOM05D004820 ORTHO05D005946 7.4e-117 424.9 416 59.1
Prupe.8G239700 Prunus persica HOM05D004820 ORTHO05D005946 4.8e-116 422.2 317 69.7
MSTRG.17449 Avicennia marina HOM05D004820 ORTHO05D005946 6.2e-116 421.8 421 58.4
EL10Ac8g18597 Beta vulgaris HOM05D004820 ORTHO05D005946 3.1e-115 419.5 422 57.3
BcaC07g42265 Brassica carinata HOM05D004820 ORTHO05D005946 5.3e-115 418.7 401 58.9
AUR62027118 Chenopodium quinoa HOM05D004820 ORTHO05D005946 1.2e-114 417.5 424 55.7
RcHm_v2.0_Chr6g0290841 Rosa chinensis HOM05D004820 ORTHO05D005946 4.5e-114 415.6 327 67.3
Zm00001eb426850 Zea mays HOM05D004820 ORTHO05D005946 5.8e-114 415.2 395 59.7
C08p52910 Brassica napus HOM05D004820 ORTHO05D005946 7.6e-114 414.8 414 58.5
BolC8t52807H Brassica oleracea HOM05D004820 ORTHO05D005946 2.2e-113 413.3 415 58.6
AUR62012894 Chenopodium quinoa HOM05D004820 ORTHO05D005946 3.8e-113 412.5 421 55.6
FAN20G0972 Fragaria x ananassa HOM05D004820 ORTHO05D005946 3.8e-113 412.5 421 57.0
CARHR002470 Cardamine hirsuta HOM05D004820 ORTHO05D005946 6.5e-113 411.8 334 65.9
FvH4_2g23380 Fragaria vesca HOM05D004820 ORTHO05D005946 1.9e-112 410.2 421 56.8
Thhalv10009621m.g Eutrema salsugineum HOM05D004820 ORTHO05D005946 1.2e-111 407.5 329 66.3
Carub.0001s0228 Capsella rubella HOM05D004820 ORTHO05D005946 2.1e-111 406.8 334 65.3
Lsat_1_v5_gn_5_187781 Lactuca sativa HOM05D004820 ORTHO05D005946 2.1e-111 406.8 405 57.5
AT1G03140 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 2.7e-111 406.4 328 66.2
Sp1g02160 Schrenkiella parvula HOM05D004820 ORTHO05D005946 3.5e-111 406.0 321 68.5
FAN15G1635 Fragaria x ananassa HOM05D004820 ORTHO05D005946 3.0e-110 402.9 421 56.3
FAN24G1940 Fragaria x ananassa HOM05D004820 ORTHO05D005946 4.3e-109 399.1 439 54.4
FAN27G0992 Fragaria x ananassa HOM05D004820 ORTHO05D005946 1.6e-108 397.1 430 55.1
HanXRQChr01g0003021 Helianthus annuus HOM05D004820 ORTHO05D005946 8.2e-108 394.8 405 56.5
A08p37470 Brassica napus HOM05D004820 ORTHO05D005946 2.0e-106 390.2 326 64.7
ECA248G2754 Erigeron canadensis HOM05D004820 ORTHO05D005946 2.0e-106 390.2 396 56.1
BraA08t35645Z Brassica rapa HOM05D004820 ORTHO05D005946 3.4e-106 389.4 326 64.4
BolC8t46841H Brassica oleracea HOM05D004820 ORTHO05D005946 4.5e-106 389.0 348 61.5
Ah.01g024010 Amaranthus hybridus HOM05D004820 ORTHO05D005946 3.8e-105 386.0 414 54.3
C08p00420 Brassica napus HOM05D004820 ORTHO05D005946 6.5e-105 385.2 348 60.9
QL03p020183 Quercus lobata HOM05D004820 ORTHO05D005946 2.5e-104 383.3 388 57.0
AL1G45340 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 4.3e-101 372.5 417 56.1
Lj4g0011679 Lotus japonicus HOM05D004820 ORTHO05D005946 3.1e-99 366.3 398 55.3
Zm00001eb216840 Zea mays HOM05D004820 ORTHO05D005946 7.9e-95 351.7 415 51.3
CBR_g23335 Chara braunii HOM05D004820 ORTHO05D005946 1.5e-93 347.4 441 48.5
SpUn0083_0020 Schrenkiella parvula HOM05D004820 ORTHO05D005946 5.7e-93 345.5 376 51.9
Sp5g11480 Schrenkiella parvula HOM05D004820 ORTHO05D005946 6.3e-92 342.0 377 51.2
Lalb_Chr02g0142711 Lupinus albus HOM05D004820 ORTHO05D005946 9.1e-91 338.2 221 75.1
PGSC0003DMG400010602 Solanum tuberosum HOM05D004820 ORTHO05D005946 5.0e-89 332.4 413 49.4
Rhsim01G0274100 Rhododendron simsii HOM05D004820 ORTHO05D005946 1.4e-86 324.3 249 66.3
PGSC0003DMG400010600 Solanum tuberosum HOM05D004820 ORTHO05D005946 1.8e-83 313.9 417 47.5
AT1G54590 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 4.8e-76 289.3 292 57.5
Solyc07g052190.1 Solanum lycopersicum HOM05D004820 ORTHO05D005946 2.4e-75 287.0 288 54.9
COL.COLO4_09079 Corchorus olitorius HOM05D004820 ORTHO05D005946 1.3e-73 281.2 452 41.8
Zm00001eb426870 Zea mays HOM05D004820 ORTHO05D005946 3.0e-70 270.0 168 79.8
GSVIVG01001158001 Vitis vinifera HOM05D004820 ORTHO05D005946 4.0e-70 269.6 158 82.9
Sopen07g025700 Solanum pennellii HOM05D004820 ORTHO05D005946 2.5e-64 250.4 335 47.8
CAN.G198.19 Capsicum annuum HOM05D004820 ORTHO05D005946 8.0e-63 245.4 352 45.5
Sopen07g025830 Solanum pennellii HOM05D004820 ORTHO05D005946 1.8e-59 234.2 254 52.0
Oeu028072.3 Olea europaea HOM05D004820 ORTHO05D005946 4.3e-56 223.0 287 50.2
Cpa.g.sc52.46 Carica papaya HOM05D004820 ORTHO05D005946 1.2e-55 221.5 145 76.6
Solyc07g052050.2 Solanum lycopersicum HOM05D004820 ORTHO05D005946 8.9e-54 215.3 167 64.7
SHI31234 Sapria himalayana HOM05D004820 ORTHO05D005946 3.7e-52 209.9 115 87.8
SHI31236 Sapria himalayana HOM05D004820 ORTHO05D005946 1.1e-51 208.4 285 48.4
Zm00001eb426830 Zea mays HOM05D004820 ORTHO05D005946 1.8e-46 191.0 118 83.9
HanXRQChr15g0487721 Helianthus annuus HOM05D004820 ORTHO05D005946 2.3e-46 190.7 168 57.7
MCO06G052 Micromonas commoda HOM05D004820 ORTHO05D005946 7.8e-42 175.6 156 54.5
Sopen07g025690 Solanum pennellii HOM05D004820 ORTHO05D005946 7.8e-42 175.6 125 68.8
Lj1g0027313 Lotus japonicus HOM05D004820 ORTHO05D005946 8.6e-41 172.2 159 55.3
Os03g0701100 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 4.0e-38 163.3 285 40.7
Cre13.g567750 Chlamydomonas reinhardtii HOM05D004820 ORTHO05D005946 3.9e-33 146.7 402 32.6
Sopen07g025610 Solanum pennellii HOM05D004820 ORTHO05D005946 7.6e-29 132.5 249 40.6
CARHR182160 Cardamine hirsuta HOM05D004820 ORTHO05D005946 2.7e-26 124.0 110 59.1
TAR365G1077 Trochodendron aralioides HOM05D004820 ORTHO05D005946 1.1e-22 112.1 97 59.8
Gohir.D05G222300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 3.1e-22 110.5 62 79.0
Gohir.D11G242500 Gossypium hirsutum HOM05D004820 ORTHO05D005946 5.2e-22 109.8 62 79.0
Gorai.009G229700 Gossypium raimondii HOM05D004820 ORTHO05D005946 9.0e-22 109.0 62 77.4
Gorai.011G187700 Gossypium raimondii HOM05D004820 ORTHO05D005946 2.0e-21 107.8 62 77.4
Zm00001eb078380 Zea mays HOM05D004820 ORTHO05D005946 2.7e-18 97.4 79 60.8
Nitab4.5_0003852g0050 Nicotiana tabacum HOM05D004820 ORTHO05D005946 6.6e-17 92.8 162 40.7
Nn4g23784 Nelumbo nucifera HOM05D004820 ORTHO05D005946 4.3e-16 90.1 108 48.1
Zm00001eb180190 Zea mays HOM05D004820 ORTHO05D005946 5.6e-16 89.7 68 61.8
vmacro14915 Vaccinium macrocarpon HOM05D004820 ORTHO05D005946 1.6e-15 88.2 140 43.6
Zm00001eb368520 Zea mays HOM05D004820 ORTHO05D005946 1.6e-15 88.2 68 61.8
Zm00001eb017440 Zea mays HOM05D004820 ORTHO05D005946 3.6e-15 87.0 66 62.1
BraA09t42170Z Brassica rapa HOM05D004820 ORTHO05D005946 1.5e-13 81.6 153 38.6
Nitab4.5_0003327g0040 Nicotiana tabacum HOM05D004820 ORTHO05D005946 1.7e-12 78.2 153 35.9
C06p09790 Brassica napus HOM05D004820 ORTHO05D001418 6.2e-07 59.7 72 43.1
BolC6t36051H Brassica oleracea HOM05D004820 ORTHO05D001418 6.2e-07 59.7 72 43.1


User provided reference genes

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