Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0088s0021 Marchantia polymorpha HOM05D007086 ORTHO05D008927 4.3e-36 154.1 75 100.0
AagrBONN_evm.TU.Sc2ySwM_362.2353 Anthoceros agrestis HOM05D002603 ORTHO05D008927 6.1e-22 107.1 69 63.8
Os07g0573600 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 1.4e-21 105.9 69 68.1
THA.LOC104809439 Tarenaya hassleriana HOM05D007086 ORTHO05D008927 1.4e-21 105.9 69 69.6
Cpa.g.sc29.74 Carica papaya HOM05D007086 ORTHO05D008927 1.8e-21 105.5 69 71.0
Os05g0198700 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 1.8e-21 105.5 69 68.1
Sed0003691 Sechium edule HOM05D007086 ORTHO05D008927 3.0e-21 104.8 69 68.1
BolC5t29822H Brassica oleracea HOM05D007086 ORTHO05D008927 3.9e-21 104.4 69 63.8
BraA06t24109Z Brassica rapa HOM05D007086 ORTHO05D008927 3.9e-21 104.4 69 63.8
CDE11G0364 Ceratophyllum demersum HOM05D007086 ORTHO05D008927 5.2e-21 104.0 69 68.1
FAN08G0246 Fragaria x ananassa HOM05D007086 ORTHO05D008927 5.2e-21 104.0 69 66.7
Hma1.2p1_0367F.1_g137100 Hydrangea macrophylla HOM05D007086 ORTHO05D008927 5.2e-21 104.0 69 66.7
Hma1.2p1_3825F.1_g337656 Hydrangea macrophylla HOM05D007086 ORTHO05D008927 5.2e-21 104.0 69 66.7
Sp1g11000 Schrenkiella parvula HOM05D007086 ORTHO05D008927 5.2e-21 104.0 69 62.3
EL10Ac7g17105 Beta vulgaris HOM05D007086 ORTHO05D008927 6.7e-21 103.6 69 68.1
CANSAT21G1174 Cannabis sativa HOM05D007086 ORTHO05D008927 6.7e-21 103.6 70 65.7
Thhalv10009271m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 8.8e-21 103.2 69 62.3
QL12p015352 Quercus lobata HOM05D007086 ORTHO05D008927 8.8e-21 103.2 70 65.7
GSVIVG01019940001 Vitis vinifera HOM05D007086 ORTHO05D008927 8.8e-21 103.2 69 66.7
MD04G1245800 Malus domestica HOM05D007086 ORTHO05D008927 1.1e-20 102.8 69 66.7
MD12G1192500 Malus domestica HOM05D007086 ORTHO05D008927 1.1e-20 102.8 69 66.7
Thecc.03G263200 Theobroma cacao HOM05D007086 ORTHO05D008927 1.1e-20 102.8 69 66.7
Pp3c1_34050 Physcomitrium patens HOM05D007086 ORTHO05D008927 1.5e-20 102.4 71 60.6
AL1G23730 Arabidopsis lyrata HOM05D007086 ORTHO05D008927 2.6e-20 101.7 69 60.9
CARHR012690 Cardamine hirsuta HOM05D007086 ORTHO05D008927 2.6e-20 101.7 69 62.3
Prupe.5G081100 Prunus persica HOM05D007086 ORTHO05D008927 2.6e-20 101.7 69 63.8
Atru.chr9.1458 Acer truncatum HOM05D007086 ORTHO05D008927 3.3e-20 101.3 69 63.8
Actinidia05249 Actinidia chinensis HOM05D001611 ORTHO05D001464 3.3e-20 101.3 69 65.2
AT1G12400 Arabidopsis thaliana HOM05D007086 ORTHO05D008927 3.3e-20 101.3 69 59.4
Manes.02G032611 Manihot esculenta HOM05D007086 ORTHO05D008927 3.3e-20 101.3 70 62.9
RcHm_v2.0_Chr7g0201071 Rosa chinensis HOM05D007086 ORTHO05D008927 3.3e-20 101.3 69 66.7
Eucgr.E00483 Eucalyptus grandis HOM05D007086 ORTHO05D008927 4.4e-20 100.9 69 63.8
Potri.001G116000 Populus trichocarpa HOM05D007086 ORTHO05D008927 4.4e-20 100.9 69 65.2
Rhsim07G0100800 Rhododendron simsii HOM05D007086 ORTHO05D008927 4.4e-20 100.9 69 66.7
CSS0011774 Camellia sinensis var. sinensis HOM05D007086 ORTHO05D008927 7.4e-20 100.1 69 62.3
CSS0048716 Camellia sinensis var. sinensis HOM05D007086 ORTHO05D008927 7.4e-20 100.1 69 62.3
Cfa012029 Carpinus fangiana HOM05D007086 ORTHO05D008927 7.4e-20 100.1 69 63.8
Carub.0001s1205 Capsella rubella HOM05D007086 ORTHO05D008927 9.7e-20 99.8 69 58.0
CiPaw.11G146300 Carya illinoinensis HOM05D007086 ORTHO05D008927 9.7e-20 99.8 69 66.7
Sabra01G0089100 Salix brachista HOM05D007086 ORTHO05D008927 1.7e-19 99.0 69 65.2
Duzib084G0284 Durio zibethinus HOM05D007086 ORTHO05D008927 2.2e-19 98.6 69 66.7
ClCG00G001010 Citrullus lanatus HOM05D007086 ORTHO05D008927 2.8e-19 98.2 69 62.3
Dinv00491 Davidia involucrata HOM05D007086 ORTHO05D008927 3.7e-19 97.8 69 66.7
Sc01g0009150 Simmondsia chinensis HOM05D007086 ORTHO05D008927 3.7e-19 97.8 69 63.8
Aa31LG1G2230 Aethionema arabicum HOM05D007086 ORTHO05D008927 4.8e-19 97.4 69 58.0
PGR031G3010 Punica granatum HOM05D007086 ORTHO05D008927 6.3e-19 97.1 69 60.9
Solyc08g079610.3 Solanum lycopersicum HOM05D007086 ORTHO05D008927 8.2e-19 96.7 69 62.3
Sopen08g027960 Solanum pennellii HOM05D007086 ORTHO05D008927 8.2e-19 96.7 69 62.3
PGSC0003DMG400019087 Solanum tuberosum HOM05D007086 ORTHO05D008927 8.2e-19 96.7 69 62.3
Glyma.08G047000 Glycine max HOM05D007086 ORTHO05D008927 1.1e-18 96.3 70 60.0
Gohir.A12G221900 Gossypium hirsutum HOM05D007086 ORTHO05D008927 1.4e-18 95.9 69 62.3
Gohir.D12G224400 Gossypium hirsutum HOM05D007086 ORTHO05D008927 1.4e-18 95.9 69 62.3
Gorai.008G240500 Gossypium raimondii HOM05D007086 ORTHO05D008927 1.4e-18 95.9 69 62.3
TWI60G0887 Tripterygium wilfordii HOM05D007086 ORTHO05D008927 1.4e-18 95.9 69 63.8
BcaB03g13189 Brassica carinata HOM05D007086 ORTHO05D008927 1.8e-18 95.5 69 56.5
CsaV3_3G003270 Cucumis sativus L. HOM05D007086 ORTHO05D008927 1.8e-18 95.5 69 60.9
Lj4g0021147 Lotus japonicus HOM05D007086 ORTHO05D008927 2.4e-18 95.1 70 60.0
Peaxi162Scf00051g00316 Petunia axillaris HOM05D007086 ORTHO05D008927 2.4e-18 95.1 69 58.0
Peaxi162Scf00078g00627 Petunia axillaris HOM05D007086 ORTHO05D008927 2.4e-18 95.1 69 58.0
PGSC0003DMG400003953 Solanum tuberosum HOM05D007086 ORTHO05D008927 2.4e-18 95.1 69 60.9
BolC8t49170H Brassica oleracea HOM05D007086 ORTHO05D008927 3.1e-18 94.7 69 56.5
Glyma.05G239900 Glycine max HOM05D007086 ORTHO05D008927 3.1e-18 94.7 70 58.6
Nn1g01223 Nelumbo nucifera HOM05D007086 ORTHO05D008927 3.1e-18 94.7 69 60.9
PSO478G4385 Papaver somniferum HOM05D007086 ORTHO05D008927 3.1e-18 94.7 69 58.0
SalBow6G6939 Salvia bowleyana HOM05D007086 ORTHO05D008927 5.3e-18 94.0 69 60.9
SEGI_31798 Sequoiadendron giganteum HOM05D007086 ORTHO05D008927 5.3e-18 94.0 69 58.0
Cc08_g13390 Coffea canephora HOM05D007086 ORTHO05D008927 7.0e-18 93.6 69 58.0
Medtr5g055890 Medicago truncatula HOM05D007086 ORTHO05D008927 7.0e-18 93.6 69 58.0
Potri.009G138800 Populus trichocarpa HOM05D007086 ORTHO05D008927 7.0e-18 93.6 69 62.3
Phvul.002G322200 Phaseolus vulgaris HOM05D007086 ORTHO05D008927 9.1e-18 93.2 70 57.1
TPR.G38364 Trifolium pratense HOM05D007086 ORTHO05D008927 9.1e-18 93.2 69 60.9
Lalb_Chr05g0222151 Lupinus albus HOM05D007086 ORTHO05D008927 1.2e-17 92.8 70 57.1
CBR_g51826 Chara braunii HOM05D007086 ORTHO05D008927 2.0e-17 92.0 68 55.9
HanXRQChr02g0046221 Helianthus annuus HOM05D007086 ORTHO05D008927 2.0e-17 92.0 69 60.9
PSO782G0332 Papaver somniferum HOM05D007086 ORTHO05D008927 3.5e-17 91.3 69 56.5
Phvul.009G128900 Phaseolus vulgaris HOM05D007086 ORTHO05D008927 3.5e-17 91.3 69 56.5
MBI12_g10752_MAGBIO Magnolia biondii HOM05D007086 ORTHO05D008927 7.7e-17 90.1 69 62.3
SGA_v2.0_scaffold37G14847 Striga asiatica HOM05D007086 ORTHO05D008927 7.7e-17 90.1 69 56.5
FAN12G2970 Fragaria x ananassa HOM05D007086 ORTHO05D008927 1.7e-16 89.0 69 59.4
FAN12G3233 Fragaria x ananassa HOM05D007086 ORTHO05D008927 1.7e-16 89.0 69 59.4
Medtr5g055880 Medicago truncatula HOM05D007086 ORTHO05D008927 1.7e-16 89.0 66 59.1
Rhsim02G0194900 Rhododendron simsii HOM05D007086 ORTHO05D008927 2.2e-16 88.6 64 64.1
FAN18G4230 Fragaria x ananassa HOM05D001611 ORTHO05D001464 3.8e-16 87.8 57 66.7
Rhsim02G0196200 Rhododendron simsii HOM05D007086 ORTHO05D008927 3.8e-16 87.8 54 74.1
Ciclev10024015m.g Citrus clementina HOM05D007086 ORTHO05D008927 6.5e-16 87.0 57 68.4
Migut.A00849 Erythranthe guttata HOM05D007086 ORTHO05D008927 1.1e-15 86.3 65 58.5
Migut.I00707 Erythranthe guttata HOM05D007086 ORTHO05D008927 1.1e-15 86.3 65 58.5
Prupe.5G081200 Prunus persica HOM05D007086 ORTHO05D008927 1.9e-15 85.5 65 58.5
SGA_v2.0_scaffold511G52628 Striga asiatica HOM05D007086 ORTHO05D008927 3.2e-15 84.7 69 55.1
BraA08t35207Z Brassica rapa HOM05D001611 ORTHO05D001464 5.5e-15 84.0 62 54.8
C08p15410 Brassica napus HOM05D001611 ORTHO05D001464 7.2e-15 83.6 62 54.8
Aqoxy7G00621 Aquilegia oxysepala HOM05D007086 ORTHO05D008927 2.7e-14 81.6 62 56.5
MD06G1064000 Malus domestica HOM05D007086 ORTHO05D008927 2.7e-14 81.6 60 65.0
AT1G62886 Arabidopsis thaliana HOM05D007086 ORTHO05D008927 4.7e-14 80.9 70 54.3
Zm00001eb267070 Zea mays HOM05D007086 ORTHO05D008927 6.1e-14 80.5 57 59.6
Lj4g0007995 Lotus japonicus HOM05D007086 ORTHO05D008927 8.0e-14 80.1 60 56.7
CAN.G630.56 Capsicum annuum HOM05D007086 ORTHO05D008927 1.0e-13 79.7 57 61.4
ClCG00G001020 Citrullus lanatus HOM05D000693 ORTHO05D001102 1.0e-13 79.7 57 59.6
Thhalv10029420m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 1.0e-13 79.7 71 52.1
Carub.0002s0211 Capsella rubella HOM05D007086 ORTHO05D008927 1.4e-13 79.3 69 53.6
MELO3C013994.2 Cucumis melo HOM05D000693 ORTHO05D001102 1.8e-13 79.0 57 59.6
AL2G12840 Arabidopsis lyrata HOM05D007086 ORTHO05D008927 3.0e-13 78.2 70 52.9
Nitab4.5_0005241g0010 Nicotiana tabacum HOM05D007086 ORTHO05D008927 6.8e-13 77.0 57 57.9
Lsat_1_v5_gn_6_9641 Lactuca sativa HOM05D007086 ORTHO05D008927 8.8e-13 76.6 59 61.0
arahy.Tifrunner.gnm1.ann1.NIEM70 Arachis hypogaea HOM05D007086 ORTHO05D008927 1.5e-12 75.9 69 50.7
Nitab4.5_0000633g0050 Nicotiana tabacum HOM05D007086 ORTHO05D008927 1.5e-12 75.9 57 54.4
Nitab4.5_0007130g0020 Nicotiana tabacum HOM05D007086 ORTHO05D008927 1.5e-12 75.9 57 54.4
TWI77G0094 Tripterygium wilfordii HOM05D007086 ORTHO05D008927 1.5e-12 75.9 54 63.0
arahy.Tifrunner.gnm1.ann1.T092PF Arachis hypogaea HOM05D007086 ORTHO05D008927 3.4e-12 74.7 58 55.2
CARHR048860 Cardamine hirsuta HOM05D007086 ORTHO05D008927 5.7e-12 73.9 71 47.9
A08p32850 Brassica napus HOM05D001611 ORTHO05D001464 4.8e-11 70.9 52 51.9
Os05g0108500 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 2.4e-10 68.6 59 54.2
Dinv08998 Davidia involucrata HOM05D007086 ORTHO05D008927 9.1e-10 66.6 49 67.3
MCO09G617 Micromonas commoda HOM05D007086 ORTHO05D008927 1.6e-09 65.9 69 40.6
Thhalv10023898m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 3.5e-09 64.7 81 45.7
HPP92_014763 Vanilla planifolia HOM05D007086 ORTHO05D008927 1.9e-07 58.9 38 60.5
Lalb_Chr18g0049811 Lupinus albus HOM05D007086 ORTHO05D008927 4.2e-07 57.8 55 43.6


User provided reference genes

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