Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0067s0078 Marchantia polymorpha HOM05D001366 ORTHO05D005449 3.3e-53 211.5 107 100.0
Mapoly0012s0108 Marchantia polymorpha HOM05D001366 ORTHO05D005449 1.2e-18 96.7 100 51.0
A08p21460 Brassica napus HOM05D001366 ORTHO05D005449 3.4e-18 95.1 98 49.0
BolC8t48576H Brassica oleracea HOM05D001366 ORTHO05D005449 3.4e-18 95.1 98 49.0
BraA08t34095Z Brassica rapa HOM05D001366 ORTHO05D005449 3.4e-18 95.1 98 49.0
AagrBONN_evm.TU.Sc2ySwM_228.5579 Anthoceros agrestis HOM05D001366 ORTHO05D005449 4.5e-18 94.7 100 48.0
EL10Ac9g20840 Beta vulgaris HOM05D001366 ORTHO05D005449 5.8e-18 94.4 98 48.0
BcaC09g50868 Brassica carinata HOM05D001366 ORTHO05D003220 5.8e-18 94.4 98 49.0
A01p15810 Brassica napus HOM05D001366 ORTHO05D003220 5.8e-18 94.4 98 49.0
C01p19760 Brassica napus HOM05D001366 ORTHO05D003220 5.8e-18 94.4 98 49.0
BolC1t01904H Brassica oleracea HOM05D001366 ORTHO05D003220 5.8e-18 94.4 98 49.0
BraA01t01516Z Brassica rapa HOM05D001366 ORTHO05D003220 5.8e-18 94.4 98 49.0
Cpa.g.sc21.43 Carica papaya HOM05D001366 ORTHO05D005449 7.6e-18 94.0 98 48.0
Psat2g064960 Pisum sativum HOM05D001366 ORTHO05D005449 7.6e-18 94.0 98 48.0
Aa31LG4G9540 Aethionema arabicum HOM05D001366 ORTHO05D005449 1.3e-17 93.2 98 48.0
arahy.Tifrunner.gnm1.ann1.T41BVH Arachis hypogaea HOM05D001366 ORTHO05D005449 1.3e-17 93.2 98 46.9
Carub.0007s1663 Capsella rubella HOM05D001366 ORTHO05D005449 1.3e-17 93.2 98 48.0
Pp3c9_10830 Physcomitrium patens HOM05D001366 ORTHO05D005449 1.3e-17 93.2 100 50.0
AL7G28780 Arabidopsis lyrata HOM05D001366 ORTHO05D005449 1.7e-17 92.8 98 48.0
AT4G24440 Arabidopsis thaliana HOM05D001366 ORTHO05D005449 1.7e-17 92.8 98 48.0
CiPaw.08G057200 Carya illinoinensis HOM05D001366 ORTHO05D005449 1.7e-17 92.8 98 46.9
ClCG11G014700 Citrullus lanatus HOM05D001366 ORTHO05D005449 1.7e-17 92.8 98 48.0
Eucgr.F00436 Eucalyptus grandis HOM05D001366 ORTHO05D005449 1.7e-17 92.8 98 48.0
Thhalv10026637m.g Eutrema salsugineum HOM05D001366 ORTHO05D005449 1.7e-17 92.8 98 48.0
Potri.005G151700 Populus trichocarpa HOM05D001366 ORTHO05D005449 1.7e-17 92.8 98 48.0
Sp7g22400 Schrenkiella parvula HOM05D001366 ORTHO05D005449 1.7e-17 92.8 98 48.0
THA.LOC104815469 Tarenaya hassleriana HOM05D001366 ORTHO05D005449 1.7e-17 92.8 98 48.0
Ah.01g003970 Amaranthus hybridus HOM05D001366 ORTHO05D005449 2.2e-17 92.4 98 48.0
ECA240G3991 Erigeron canadensis HOM05D001366 ORTHO05D005449 2.2e-17 92.4 98 46.9
Os05g0107700 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D005449 2.2e-17 92.4 98 45.9
Actinidia29656 Actinidia chinensis HOM05D001366 ORTHO05D005449 2.9e-17 92.0 98 48.0
HanXRQChr03g0063191 Helianthus annuus HOM05D001366 ORTHO05D005449 2.9e-17 92.0 98 46.9
Manes.18G057000 Manihot esculenta HOM05D001366 ORTHO05D005449 2.9e-17 92.0 98 46.9
Pp3c15_13540 Physcomitrium patens HOM05D001366 ORTHO05D005449 2.9e-17 92.0 100 49.0
THA.LOC104799853 Tarenaya hassleriana HOM05D001366 ORTHO05D005449 2.9e-17 92.0 98 46.9
AagrBONN_evm.TU.Sc2ySwM_228.3950 Anthoceros agrestis HOM05D001366 ORTHO05D005449 3.8e-17 91.7 100 46.0
arahy.Tifrunner.gnm1.ann1.8785AP Arachis hypogaea HOM05D001366 ORTHO05D005449 3.8e-17 91.7 98 45.9
arahy.Tifrunner.gnm1.ann1.CRNC3Y Arachis hypogaea HOM05D001366 ORTHO05D005449 3.8e-17 91.7 98 45.9
EL10Ac8g20405 Beta vulgaris HOM05D001366 ORTHO05D005449 3.8e-17 91.7 98 46.9
BcaC06g32884 Brassica carinata HOM05D001366 ORTHO05D005449 3.8e-17 91.7 98 46.9
BolC7t45851H Brassica oleracea HOM05D001366 ORTHO05D005449 3.8e-17 91.7 98 46.9
Psat0s2399g0160 Pisum sativum HOM05D001366 ORTHO05D005449 3.8e-17 91.7 97 46.4
SMO169G0007 Selaginella moellendorffii HOM05D001366 ORTHO05D005449 3.8e-17 91.7 100 49.0
Hund07854 Selenicereus undatus HOM05D001366 ORTHO05D005449 3.8e-17 91.7 98 45.9
GSVIVG01009213001 Vitis vinifera HOM05D001366 ORTHO05D005449 3.8e-17 91.7 98 46.9
arahy.Tifrunner.gnm1.ann1.HU70H8 Arachis hypogaea HOM05D001366 ORTHO05D005449 4.9e-17 91.3 98 45.9
BcaNung05637 Brassica carinata HOM05D001366 ORTHO05D005449 4.9e-17 91.3 98 46.9
A03p55290 Brassica napus HOM05D001366 ORTHO05D005449 4.9e-17 91.3 98 46.9
C07p53590 Brassica napus HOM05D001366 ORTHO05D005449 4.9e-17 91.3 98 46.9
BraA03t14588Z Brassica rapa HOM05D001366 ORTHO05D005449 4.9e-17 91.3 98 46.9
CARHR231830 Cardamine hirsuta HOM05D001366 ORTHO05D005449 4.9e-17 91.3 98 46.9
Ciclev10002917m.g Citrus clementina HOM05D001366 ORTHO05D005449 4.9e-17 91.3 98 46.9
COL.COLO4_35286 Corchorus olitorius HOM05D001366 ORTHO05D005449 4.9e-17 91.3 98 46.9
Duzib041G0019 Durio zibethinus HOM05D001366 ORTHO05D005449 4.9e-17 91.3 98 46.9
FvH4_5g34180 Fragaria vesca HOM05D001366 ORTHO05D005449 4.9e-17 91.3 98 46.9
FAN18G2982 Fragaria x ananassa HOM05D001366 ORTHO05D005449 4.9e-17 91.3 98 46.9
Glyma.02G216100 Glycine max HOM05D001366 ORTHO05D005449 4.9e-17 91.3 98 46.9
HanXRQChr10g0277741 Helianthus annuus HOM05D001366 ORTHO05D005449 4.9e-17 91.3 98 45.9
PSO700G0345 Papaver somniferum HOM05D001366 ORTHO05D005449 4.9e-17 91.3 98 45.9
Phvul.008G183300 Phaseolus vulgaris HOM05D001366 ORTHO05D005449 4.9e-17 91.3 98 46.9
FAN04G2369 Fragaria x ananassa HOM05D001366 ORTHO05D005449 6.4e-17 90.9 98 46.9
LjContig00408g0006754 Lotus japonicus HOM05D001366 ORTHO05D005449 6.4e-17 90.9 98 46.9
Nitab4.5_0000885g0060 Nicotiana tabacum HOM05D001366 ORTHO05D005449 6.4e-17 90.9 98 46.9
PSO013G0324 Papaver somniferum HOM05D001366 ORTHO05D005449 6.4e-17 90.9 98 45.9
PSO761G0276 Papaver somniferum HOM05D001366 ORTHO05D005449 6.4e-17 90.9 98 45.9
Peaxi162Scf00160g00913 Petunia axillaris HOM05D001366 ORTHO05D005449 6.4e-17 90.9 98 46.9
Prupe.1G536300 Prunus persica HOM05D001366 ORTHO05D005449 6.4e-17 90.9 98 46.9
MSTRG.27758 Avicennia marina HOM05D001366 ORTHO05D005449 8.4e-17 90.5 98 45.9
MELO3C008106.2 Cucumis melo HOM05D001366 ORTHO05D005449 8.4e-17 90.5 98 48.0
CsaV3_2G033370 Cucumis sativus L. HOM05D001366 ORTHO05D005449 8.4e-17 90.5 98 48.0
DCAR_006444 Daucus carota HOM05D001366 ORTHO05D005449 8.4e-17 90.5 98 46.9
Gohir.A05G264200 Gossypium hirsutum HOM05D001366 ORTHO05D005449 8.4e-17 90.5 98 45.9
Gorai.009G278800 Gossypium raimondii HOM05D001366 ORTHO05D005449 8.4e-17 90.5 98 45.9
Lsat_1_v5_gn_7_43741 Lactuca sativa HOM05D001366 ORTHO05D005449 8.4e-17 90.5 82 51.2
PSO832G3977 Papaver somniferum HOM05D001366 ORTHO05D005449 8.4e-17 90.5 98 44.9
PGR042G3224 Punica granatum HOM05D001366 ORTHO05D005449 8.4e-17 90.5 98 46.9
RcHm_v2.0_Chr7g0233761 Rosa chinensis HOM05D001366 ORTHO05D005449 8.4e-17 90.5 98 46.9
Sed0015347 Sechium edule HOM05D001366 ORTHO05D005449 8.4e-17 90.5 98 48.0
TAR625G0060 Trochodendron aralioides HOM05D001366 ORTHO05D005449 8.4e-17 90.5 98 45.9
Zm00001eb356100 Zea mays HOM05D001366 ORTHO05D005449 8.4e-17 90.5 98 45.9
Aqoxy2G03242 Aquilegia oxysepala HOM05D001366 ORTHO05D005449 1.1e-16 90.1 98 45.9
Hma1.2p1_0125F.1_g058680 Hydrangea macrophylla HOM05D001366 ORTHO05D005449 1.1e-16 90.1 98 45.9
Lalb_Chr08g0242611 Lupinus albus HOM05D001366 ORTHO05D005449 1.1e-16 90.1 98 45.9
MBI19_g32700_MAGBIO Magnolia biondii HOM05D001366 ORTHO05D005449 1.1e-16 90.1 98 46.9
Medtr7g005540 Medicago truncatula HOM05D001366 ORTHO05D005449 1.1e-16 90.1 98 45.9
Rhsim07G0213700 Rhododendron simsii HOM05D001366 ORTHO05D005449 1.1e-16 90.1 98 45.9
Aqoxy6G00666 Aquilegia oxysepala HOM05D001366 ORTHO05D005449 1.4e-16 89.7 98 45.9
CANSAT25G2801 Cannabis sativa HOM05D001366 ORTHO05D005449 1.4e-16 89.7 98 45.9
Gohir.D05G266700 Gossypium hirsutum HOM05D001366 ORTHO05D005449 1.4e-16 89.7 98 45.9
Lsat_1_v5_gn_6_107360 Lactuca sativa HOM05D001366 ORTHO05D005449 1.4e-16 89.7 98 44.9
Lalb_Chr11g0064851 Lupinus albus HOM05D001366 ORTHO05D005449 1.4e-16 89.7 98 45.9
Sed0016266 Sechium edule HOM05D001366 ORTHO05D005449 1.4e-16 89.7 98 46.9
TPR.G15622 Trifolium pratense HOM05D001366 ORTHO05D005449 1.4e-16 89.7 98 46.9
ATR0691G175 Amborella trichopoda HOM05D001366 ORTHO05D005449 1.9e-16 89.4 98 45.9
Nn1g05642 Nelumbo nucifera HOM05D001366 ORTHO05D005449 1.9e-16 89.4 98 45.9
Os01g0970500 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D005449 1.9e-16 89.4 98 44.9
Thecc.08G074000 Theobroma cacao HOM05D001366 ORTHO05D005449 1.9e-16 89.4 98 45.9
Atru.chr11.619 Acer truncatum HOM05D001366 ORTHO05D005449 2.4e-16 89.0 98 45.9
Cc10_g08370 Coffea canephora HOM05D001366 ORTHO05D005449 2.4e-16 89.0 98 45.9
CsaV3_2G033350 Cucumis sativus L. HOM05D001366 ORTHO05D005449 2.4e-16 89.0 98 48.0
Lalb_Chr23g0269931 Lupinus albus HOM05D001366 ORTHO05D005449 2.4e-16 89.0 98 45.9
TWI09G0135 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 3.2e-16 88.6 98 45.9
Zm00001eb139900 Zea mays HOM05D001366 ORTHO05D005449 3.2e-16 88.6 98 44.9
CSS0026904 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D005449 4.2e-16 88.2 98 45.9
Glyma.14G183100 Glycine max HOM05D001366 ORTHO05D005449 4.2e-16 88.2 98 45.9
Nitab4.5_0000354g0080 Nicotiana tabacum HOM05D001366 ORTHO05D005449 4.2e-16 88.2 79 51.9
TPR.G38776 Trifolium pratense HOM05D001366 ORTHO05D005449 4.2e-16 88.2 98 45.9
Atru.chr13.973 Acer truncatum HOM05D001366 ORTHO05D005449 5.5e-16 87.8 98 45.9
CiPaw.07G162800 Carya illinoinensis HOM05D001366 ORTHO05D005449 5.5e-16 87.8 98 44.9
Haze_22489 Corylus avellana HOM05D001366 ORTHO05D005449 5.5e-16 87.8 98 45.9
TWI73G1055 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 5.5e-16 87.8 98 45.9
ECA246G1742 Erigeron canadensis HOM05D001366 ORTHO05D005449 9.3e-16 87.0 83 48.2
Gohir.D05G220900 Gossypium hirsutum HOM05D001366 ORTHO05D005449 9.3e-16 87.0 98 44.9
Gorai.009G228000 Gossypium raimondii HOM05D001366 ORTHO05D005449 9.3e-16 87.0 98 44.9
SalBow6G3832 Salvia bowleyana HOM05D001366 ORTHO05D005449 9.3e-16 87.0 79 49.4
SalBow6G5818 Salvia bowleyana HOM05D001366 ORTHO05D005449 9.3e-16 87.0 79 49.4
SGA_v2.0_scaffold337G49194 Striga asiatica HOM05D001366 ORTHO05D005449 9.3e-16 87.0 79 49.4
HPP92_010288 Vanilla planifolia HOM05D001366 ORTHO05D005449 9.3e-16 87.0 98 44.9
MSTRG.5323 Avicennia marina HOM05D001366 ORTHO05D005449 1.2e-15 86.7 79 48.1
MSTRG.16686 Avicennia marina HOM05D001366 ORTHO05D005449 1.6e-15 86.3 79 49.4
Oeu040884.1 Olea europaea HOM05D001366 ORTHO05D005449 1.6e-15 86.3 79 49.4
TWI56G0439 Tripterygium wilfordii HOM05D001366 ORTHO05D005449 2.1e-15 85.9 98 44.9
unitig_22.g6842 Utricularia gibba HOM05D001366 ORTHO05D005449 2.1e-15 85.9 79 49.4
CSS0031876 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D005449 2.7e-15 85.5 98 44.9
Migut.N01147 Erythranthe guttata HOM05D001366 ORTHO05D005449 2.7e-15 85.5 79 49.4
SalBow3G1925 Salvia bowleyana HOM05D001366 ORTHO05D005449 2.7e-15 85.5 79 49.4
PGSC0003DMG400002052 Solanum tuberosum HOM05D001366 ORTHO05D005449 2.7e-15 85.5 98 44.9
SGA_v2.0_scaffold219G42523 Striga asiatica HOM05D001366 ORTHO05D005449 2.7e-15 85.5 79 48.1
CAN.G1104.8 Capsicum annuum HOM05D001366 ORTHO05D005449 3.5e-15 85.1 98 44.9
Solyc12g088030.2 Solanum lycopersicum HOM05D001366 ORTHO05D005449 3.5e-15 85.1 98 44.9
Sopen12g030060 Solanum pennellii HOM05D001366 ORTHO05D005449 3.5e-15 85.1 98 44.9
Medtr5g066740 Medicago truncatula HOM05D001366 ORTHO05D005449 1.0e-14 83.6 98 42.9
Actinidia19254 Actinidia chinensis HOM05D001366 ORTHO05D005449 3.0e-14 82.0 98 43.9
TAR381G0322 Trochodendron aralioides HOM05D001366 ORTHO05D005449 1.5e-13 79.7 79 49.4
Gohir.A05G216500 Gossypium hirsutum HOM05D001366 ORTHO05D005449 2.5e-13 79.0 108 40.7
Sabra05G0119200 Salix brachista HOM05D001366 ORTHO05D005449 2.5e-13 79.0 124 37.9
AUR62017035 Chenopodium quinoa HOM05D001366 ORTHO05D005449 9.6e-13 77.0 89 43.8
Rhsim02G0071900 Rhododendron simsii HOM05D001366 ORTHO05D005449 9.6e-13 77.0 114 38.6
RcHm_v2.0_Chr5g0012851 Rosa chinensis HOM05D001366 ORTHO05D005449 2.1e-12 75.9 100 42.0
Duzib116G0949 Durio zibethinus HOM05D001366 ORTHO05D005449 4.8e-12 74.7 98 40.8
MD08G1203900 Malus domestica HOM05D001366 ORTHO05D005449 4.8e-12 74.7 89 43.8
SHI29728 Sapria himalayana HOM05D001366 ORTHO05D005449 6.9e-11 70.9 98 39.8
unitig_8.g3420 Utricularia gibba HOM05D001366 ORTHO05D005449 9.0e-11 70.5 84 40.5
Migut.B00439 Erythranthe guttata HOM05D001366 ORTHO05D005449 2.0e-10 69.3 82 42.7
Lsat_1_v5_gn_4_60280 Lactuca sativa HOM05D001366 ORTHO05D005449 7.6e-10 67.4 62 53.2
Dinv42590 Davidia involucrata HOM05D001366 ORTHO05D005449 1.4e-08 63.2 86 41.9
Haze_27711 Corylus avellana HOM05D001366 ORTHO05D005449 4.2e-08 61.6 104 34.6
AagrBONN_evm.TU.Sc2ySwM_368.1269 Anthoceros agrestis HOM05D001366 ORTHO05D005449 3.5e-07 58.5 105 30.5
Actinidia19617 Actinidia chinensis HOM05D001366 ORTHO05D005449 1.3e-06 56.6 66 43.9
VMungo0647G1399 Vigna mungo HOM05D001366 ORTHO05D005449 1.3e-06 56.6 82 39.0
QL09p018667 Quercus lobata HOM05D001366 ORTHO05D005449 3.0e-06 55.5 56 48.2
Ca_08744_v3 Cicer arietinum L. HOM05D001366 ORTHO05D005449 3.9e-06 55.1 56 48.2
Oeu038169.3 Olea europaea HOM05D001366 ORTHO05D005449 3.9e-06 55.1 41 61.0
vmacro04625 Vaccinium macrocarpon HOM05D001366 ORTHO05D005449 5.1e-06 54.7 56 46.4


User provided reference genes

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