Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0047s0138 Marchantia polymorpha HOM05D004874 ORTHO05D006796 0.0e+00 2803.1 1381 100.0
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1578.5 1314 62.3
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1550.0 1376 58.9
Pp3c2_2760 Physcomitrium patens HOM05D004874 ORTHO05D006796 0.0e+00 1546.6 1377 60.1
AagrBONN_evm.TU.Sc2ySwM_228.911 Anthoceros agrestis HOM05D004874 ORTHO05D006796 0.0e+00 1410.2 1170 64.3
SMO143G0116 Selaginella moellendorffii HOM05D004874 ORTHO05D006796 0.0e+00 1355.5 1230 57.7
SEGI_33214 Sequoiadendron giganteum HOM05D004874 ORTHO05D006796 0.0e+00 1335.5 1329 54.6
Thecc.01G111200 Theobroma cacao HOM05D004874 ORTHO05D006796 0.0e+00 1162.9 1321 48.4
Atru.chr4.387 Acer truncatum HOM05D004874 ORTHO05D006796 0.0e+00 1161.0 1333 48.3
ATR0564G436 Amborella trichopoda HOM05D004874 ORTHO05D006796 0.0e+00 1160.2 1341 48.2
TWI74G1507 Tripterygium wilfordii HOM05D004874 ORTHO05D006796 0.0e+00 1156.7 1324 48.2
Ciclev10024728m.g Citrus clementina HOM05D004874 ORTHO05D006796 0.0e+00 1154.4 1327 47.4
Dinv19497 Davidia involucrata HOM05D004874 ORTHO05D006796 0.0e+00 1150.6 1325 48.9
GSVIVG01022217001 Vitis vinifera HOM05D004874 ORTHO05D006796 0.0e+00 1148.3 1332 48.5
Aqoxy6G00493 Aquilegia oxysepala HOM05D004874 ORTHO05D006796 0.0e+00 1146.7 1319 47.5
Prupe.6G174100 Prunus persica HOM05D004874 ORTHO05D006796 0.0e+00 1140.9 1325 48.3
Nn5g28922 Nelumbo nucifera HOM05D004874 ORTHO05D006796 0.0e+00 1140.6 1328 48.8
FAN23G3027 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1140.2 1343 47.7
CSS0018271 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1139.8 1331 48.2
Actinidia15577 Actinidia chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1138.6 1332 47.6
arahy.Tifrunner.gnm1.ann1.M2IALY Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1137.5 1327 46.9
arahy.Tifrunner.gnm1.ann1.ZQBN5H Arachis hypogaea HOM05D004874 ORTHO05D006796 0.0e+00 1137.1 1327 46.9
QL06p032401 Quercus lobata HOM05D004874 ORTHO05D006796 0.0e+00 1137.1 1330 48.0
Gorai.011G111800 Gossypium raimondii HOM05D004874 ORTHO05D006796 0.0e+00 1136.7 1328 47.7
Gohir.D10G102100 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1133.6 1328 47.6
Gohir.A10G086600 Gossypium hirsutum HOM05D004874 ORTHO05D006796 0.0e+00 1132.1 1324 47.6
FAN26G2351 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1131.3 1335 47.5
ECA238G3208 Erigeron canadensis HOM05D004874 ORTHO05D006796 0.0e+00 1130.9 1321 47.7
FvH4_1g22150 Fragaria vesca HOM05D004874 ORTHO05D006796 0.0e+00 1129.0 1344 47.3
MD15G1333600 Malus domestica HOM05D004874 ORTHO05D006796 0.0e+00 1128.6 1344 47.9
CANSAT01G0647 Cannabis sativa HOM05D004874 ORTHO05D006796 0.0e+00 1127.9 1323 47.4
RcHm_v2.0_Chr2g0116231 Rosa chinensis HOM05D004874 ORTHO05D006796 0.0e+00 1127.5 1323 47.5
PSO675G8458 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1127.1 1329 47.5
Phvul.009G140100 Phaseolus vulgaris HOM05D004874 ORTHO05D006796 0.0e+00 1124.4 1326 46.8
Manes.13G077640 Manihot esculenta HOM05D004874 ORTHO05D006796 0.0e+00 1123.2 1338 47.5
Glyma.04G220000 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1122.8 1326 46.8
FAN28G2703 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1122.5 1343 47.0
CARHR113090 Cardamine hirsuta HOM05D004874 ORTHO05D006796 0.0e+00 1121.3 1320 47.0
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1120.9 1319 46.7
Glyma.06G145900 Glycine max HOM05D004874 ORTHO05D006796 0.0e+00 1120.9 1326 46.8
VMungo1309G2704 Vigna mungo HOM05D004874 ORTHO05D006796 0.0e+00 1120.9 1326 46.3
BcaC07g41106 Brassica carinata HOM05D004874 ORTHO05D006796 0.0e+00 1120.5 1326 46.9
Rhsim10G0151300 Rhododendron simsii HOM05D004874 ORTHO05D006796 0.0e+00 1120.5 1341 47.4
CSS0002284 Camellia sinensis var. sinensis HOM05D004874 ORTHO05D006796 0.0e+00 1119.0 1338 47.5
C08p41080 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1118.6 1326 46.8
HanXRQChr10g0295251 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1116.7 1323 47.0
PSO541G0735 Papaver somniferum HOM05D004874 ORTHO05D006796 0.0e+00 1115.1 1332 47.2
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 0.0e+00 1114.8 1319 47.0
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 0.0e+00 1113.6 1325 46.3
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1112.8 1332 46.7
BolC8t51674H Brassica oleracea HOM05D004874 ORTHO05D006796 0.0e+00 1112.4 1332 46.6
CsaV3_6G042450 Cucumis sativus L. HOM05D004874 ORTHO05D006796 0.0e+00 1110.9 1322 46.5
A09p57840 Brassica napus HOM05D004874 ORTHO05D006796 0.0e+00 1109.7 1320 47.0
ClCG01G016180 Citrullus lanatus HOM05D004874 ORTHO05D006796 0.0e+00 1109.0 1322 46.6
FAN19G0866 Fragaria x ananassa HOM05D004874 ORTHO05D006796 0.0e+00 1108.6 1366 46.6
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 0.0e+00 1108.2 1320 46.7
TPR.G23744 Trifolium pratense HOM05D004874 ORTHO05D006796 0.0e+00 1105.9 1322 46.4
AL4G11330 Arabidopsis lyrata HOM05D004874 ORTHO05D006796 0.0e+00 1105.1 1319 46.9
Lj1g0000337 Lotus japonicus HOM05D004874 ORTHO05D006796 0.0e+00 1102.0 1324 46.1
BraA09t41177Z Brassica rapa HOM05D004874 ORTHO05D006796 0.0e+00 1101.3 1326 46.7
HanXRQChr14g0446191 Helianthus annuus HOM05D004874 ORTHO05D006796 0.0e+00 1101.3 1330 46.8
Eucgr.H04838 Eucalyptus grandis HOM05D004874 ORTHO05D006796 0.0e+00 1100.9 1334 45.8
Potri.005G083800 Populus trichocarpa HOM05D004874 ORTHO05D006796 0.0e+00 1100.9 1349 46.4
AT2G22010 Arabidopsis thaliana HOM05D004874 ORTHO05D006796 0.0e+00 1099.0 1322 46.3
Lsat_1_v5_gn_2_65401 Lactuca sativa HOM05D004874 ORTHO05D006796 0.0e+00 1097.0 1336 46.7
Sopen04g023580 Solanum pennellii HOM05D004874 ORTHO05D006796 0.0e+00 1095.9 1334 46.3
CAN.G1728.1 Capsicum annuum HOM05D004874 ORTHO05D006796 0.0e+00 1094.7 1343 45.9
Cc07_g16070 Coffea canephora HOM05D004874 ORTHO05D006796 0.0e+00 1094.0 1332 46.5
Sabra05G0068900 Salix brachista HOM05D004874 ORTHO05D006796 0.0e+00 1094.0 1357 46.4
Ca_16889_v3 Cicer arietinum L. HOM05D004874 ORTHO05D006796 0.0e+00 1092.0 1323 46.3
Solyc04g054140.4 Solanum lycopersicum HOM05D004874 ORTHO05D006796 0.0e+00 1090.9 1339 46.3
Peaxi162Scf00323g00112 Petunia axillaris HOM05D004874 ORTHO05D006796 0.0e+00 1088.6 1316 47.1
Medtr3g094770 Medicago truncatula HOM05D004874 ORTHO05D006796 0.0e+00 1088.2 1323 46.0
Psat5g065960 Pisum sativum HOM05D004874 ORTHO05D006796 0.0e+00 1087.4 1323 46.3
Thhalv10000015m.g Eutrema salsugineum HOM05D004874 ORTHO05D006796 0.0e+00 1081.6 1319 46.0
Lalb_Chr11g0068041 Lupinus albus HOM05D004874 ORTHO05D006796 0.0e+00 1080.1 1320 45.4
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 0.0e+00 1075.8 1294 46.8
Migut.H02425 Erythranthe guttata HOM05D004874 ORTHO05D006796 2.8e-311 1072.4 1342 45.9
Oeu028379.4 Olea europaea HOM05D004874 ORTHO05D006796 4.7e-311 1071.6 1433 44.0
Lalb_Chr13g0296191 Lupinus albus HOM05D004874 ORTHO05D006796 1.1e-310 1070.5 1327 45.2
EL10Ac6g14746 Beta vulgaris HOM05D004874 ORTHO05D006796 4.3e-307 1058.5 1400 43.8
Manes.12G141800 Manihot esculenta HOM05D004874 ORTHO05D006796 4.3e-307 1058.5 1325 45.7
Zm00001eb328050 Zea mays HOM05D004874 ORTHO05D006796 1.1e-305 1053.9 1338 44.8
AUR62003312 Chenopodium quinoa HOM05D004874 ORTHO05D006796 5.9e-304 1048.1 1329 45.5
AUR62016271 Chenopodium quinoa HOM05D004874 ORTHO05D006796 7.7e-304 1047.7 1327 45.0
PGR102G1404 Punica granatum HOM05D004874 ORTHO05D006796 1.0e-303 1047.3 1334 44.9
Aa31LG7G14640 Aethionema arabicum HOM05D004874 ORTHO05D006796 1.3e-303 1047.0 1326 44.8
SalBow6G4347 Salvia bowleyana HOM05D004874 ORTHO05D006796 2.2e-303 1046.2 1231 48.1
Hund19660 Selenicereus undatus HOM05D004874 ORTHO05D006796 2.2e-303 1046.2 1282 46.3
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 7.2e-302 1041.2 1538 41.7
Sed0015455 Sechium edule HOM05D004874 ORTHO05D006796 1.0e-300 1037.3 1333 45.3
TAR628G0415 Trochodendron aralioides HOM05D004874 ORTHO05D006796 6.7e-300 1034.6 1250 47.4
SGA_v2.0_scaffold2G01299 Striga asiatica HOM05D004874 ORTHO05D006796 2.6e-296 1022.7 1430 42.4
CDE07G0820 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 5.0e-295 1018.5 1332 44.1
DCAR_014257 Daucus carota HOM05D004874 ORTHO05D006796 7.7e-288 994.6 1320 43.6
MELO3C007488.2 Cucumis melo HOM05D004874 ORTHO05D006796 5.0e-287 991.9 1327 43.6
TAR376G0110 Trochodendron aralioides HOM05D004874 ORTHO05D006796 1.2e-277 960.7 1090 49.2
Nitab4.5_0000156g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 5.9e-272 941.8 1086 48.5
PGSC0003DMG400012951 Solanum tuberosum HOM05D004874 ORTHO05D006796 5.0e-263 912.1 1089 47.0
MD01G1017400 Malus domestica HOM05D004874 ORTHO05D006796 5.7e-259 898.7 1089 46.6
unitig_899.g14600 Utricularia gibba HOM05D004874 ORTHO05D006796 2.9e-255 886.3 1217 42.4
CDE04G1796 Ceratophyllum demersum HOM05D004874 ORTHO05D006796 9.2e-249 864.8 1245 41.2
Duzib147G0760 Durio zibethinus HOM05D004874 ORTHO05D006796 5.8e-243 845.5 1320 39.4
CiPaw.04G092800 Carya illinoinensis HOM05D004874 ORTHO05D006796 2.1e-213 747.3 837 50.2
COL.COLO4_11028 Corchorus olitorius HOM05D004874 ORTHO05D006796 3.0e-207 726.9 1322 37.1
FAN01G2715 Fragaria x ananassa HOM05D004874 ORTHO05D006796 7.1e-201 705.7 990 43.3
Ah.02g124400 Amaranthus hybridus HOM05D004874 ORTHO05D006796 3.1e-196 690.3 909 44.0
Oeu030684.1 Olea europaea HOM05D004874 ORTHO05D006796 1.9e-193 681.0 793 48.4
MSTRG.2539 Avicennia marina HOM05D004874 ORTHO05D006796 7.4e-190 669.1 793 47.7
Lj2C562G3 Lonicera japonica HOM05D004874 ORTHO05D006796 4.5e-187 659.8 878 44.0
MBI02_g13022_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 1.9e-185 654.4 876 43.9
Cpa.g.sc196.7 Carica papaya HOM05D004874 ORTHO05D006796 6.7e-183 646.0 871 43.4
FAN06G3019 Fragaria x ananassa HOM05D004874 ORTHO05D006796 2.2e-181 641.0 997 41.4
vmacro12908 Vaccinium macrocarpon HOM05D004874 ORTHO05D006796 3.5e-171 607.1 809 43.3
FAN06G4447 Fragaria x ananassa HOM05D004874 ORTHO05D006796 9.4e-169 599.0 995 39.8
FAN10G0201 Fragaria x ananassa HOM05D004874 ORTHO05D006796 1.7e-165 588.2 742 45.8
HPP92_016848 Vanilla planifolia HOM05D004874 ORTHO05D006796 2.2e-165 587.8 643 50.9
HPP92_016847 Vanilla planifolia HOM05D004874 ORTHO05D006796 1.0e-135 489.2 656 42.1
Lj2A562T49 Lonicera japonica HOM05D004874 ORTHO05D006796 1.7e-133 481.9 482 52.9
FAN03G2613 Fragaria x ananassa HOM05D004874 ORTHO05D006796 5.4e-124 450.3 524 47.7
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 4.0e-119 434.1 1451 28.7
Oeu030685.1 Olea europaea HOM05D004874 ORTHO05D006796 9.9e-118 429.5 531 45.8
FvH4_7g04730 Fragaria vesca HOM05D004874 ORTHO05D006796 8.1e-112 409.8 593 42.3
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 7.1e-100 370.2 1327 26.8
MBI02_g44126_MAGBIO Magnolia biondii HOM05D004874 ORTHO05D006796 1.4e-92 345.9 377 51.7
Cpa.g.sc196.6 Carica papaya HOM05D004874 ORTHO05D006796 1.8e-87 328.9 334 53.0
Cc07_g14920 Coffea canephora HOM05D004874 ORTHO05D006796 5.3e-87 327.4 405 44.9
Ah.02g124390 Amaranthus hybridus HOM05D004874 ORTHO05D006796 6.0e-83 313.9 347 50.1
Os07g0626900 Oryza sativa ssp. japonica HOM05D004874 ORTHO05D006796 4.8e-64 251.1 272 47.8
FvH4_7g04731 Fragaria vesca HOM05D004874 ORTHO05D006796 6.8e-26 124.4 135 47.4
Nitab4.5_0010573g0010 Nicotiana tabacum HOM05D004874 ORTHO05D006796 1.0e-21 110.5 155 40.0
Solyc05g055570.3 Solanum lycopersicum HOM05D004874 ORTHO05D014502 4.3e-20 105.1 106 53.8
HanXRQChr11g0324541 Helianthus annuus HOM05D004874 ORTHO05D006796 1.2e-19 103.6 79 60.8
Sabra07G0068700 Salix brachista HOM05D004874 ORTHO05D006796 3.3e-12 79.0 155 35.5
HanXRQChr11g0341101 Helianthus annuus HOM05D004874 ORTHO05D006796 6.2e-11 74.7 50 68.0
HanXRQChr12g0385291 Helianthus annuus HOM05D004874 ORTHO05D006796 3.4e-09 68.9 44 72.7
PRCOL_00005975 Prasinoderma coloniale HOM05D000032 ORTHO05D028824 4.4e-09 68.6 153 28.1
MCO11G679 Micromonas commoda HOM05D000032 ORTHO05D028824 9.8e-09 67.4 162 28.4
Nitab4.5_0000904g0190 Nicotiana tabacum HOM05D004874 ORTHO05D006796 1.4e-07 63.5 46 65.2
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 1.4e-07 63.5 214 25.7
CBR_g19286 Chara braunii HOM05D004797 ORTHO05D005752 3.2e-07 62.4 234 28.2
Haze_26842 Corylus avellana HOM05D000032 ORTHO05D028824 4.6e-06 58.5 110 24.5
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 6.0e-06 58.2 94 40.4


User provided reference genes

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