Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0042s0060 Marchantia polymorpha HOM05D004763 ORTHO05D007492 0.0e+00 1315.8 667 100.0
Pp3c22_12720 Physcomitrium patens HOM05D004763 ORTHO05D007492 9.8e-289 996.5 666 76.4
AagrBONN_evm.TU.Sc2ySwM_344.3405 Anthoceros agrestis HOM05D004763 ORTHO05D007492 8.9e-274 946.8 646 72.9
CSS0044360 Camellia sinensis var. sinensis HOM05D004763 ORTHO05D007492 2.0e-270 935.6 669 69.4
Sc09g0000480 Simmondsia chinensis HOM05D004763 ORTHO05D007492 2.7e-270 935.3 666 69.5
AT3G20780 Arabidopsis thaliana HOM05D004763 ORTHO05D007492 3.5e-270 934.9 664 70.8
Gohir.D13G219100 Gossypium hirsutum HOM05D004763 ORTHO05D007492 3.5e-270 934.9 669 70.0
Gorai.013G250000 Gossypium raimondii HOM05D004763 ORTHO05D007492 1.3e-269 932.9 669 69.8
AL3G34700 Arabidopsis lyrata HOM05D004763 ORTHO05D007492 2.3e-269 932.2 668 70.4
Hund22081 Selenicereus undatus HOM05D004763 ORTHO05D007492 2.3e-269 932.2 665 69.8
Carub.0003s2074 Capsella rubella HOM05D004763 ORTHO05D007492 3.0e-269 931.8 668 70.1
Gohir.A13G215400 Gossypium hirsutum HOM05D004763 ORTHO05D007492 5.0e-269 931.0 669 69.7
Sp3g18800 Schrenkiella parvula HOM05D004763 ORTHO05D007492 6.6e-269 930.6 663 70.3
Nn7g36058 Nelumbo nucifera HOM05D004763 ORTHO05D007492 8.6e-269 930.2 665 70.8
Thhalv10020214m.g Eutrema salsugineum HOM05D004763 ORTHO05D007492 2.5e-268 928.7 666 70.3
PSO339G3791 Papaver somniferum HOM05D004763 ORTHO05D007492 4.3e-268 927.9 660 70.5
CiPaw.14G125100 Carya illinoinensis HOM05D004763 ORTHO05D007492 5.6e-268 927.5 667 69.3
GSVIVG01025336001 Vitis vinifera HOM05D004763 ORTHO05D007492 9.5e-268 926.8 665 69.8
THA.LOC104816912 Tarenaya hassleriana HOM05D004763 ORTHO05D007492 1.2e-267 926.4 665 70.1
TAR623G1126 Trochodendron aralioides HOM05D004763 ORTHO05D007492 1.2e-267 926.4 666 70.3
Thecc.09G223100 Theobroma cacao HOM05D004763 ORTHO05D007492 1.6e-267 926.0 669 69.7
EL10Ac4g10318 Beta vulgaris HOM05D004763 ORTHO05D007492 2.8e-267 925.2 660 69.5
BcaC05g28282 Brassica carinata HOM05D004763 ORTHO05D007492 2.8e-267 925.2 665 69.6
C05p43300 Brassica napus HOM05D004763 ORTHO05D007492 4.7e-267 924.5 665 69.5
BcaB06g26148 Brassica carinata HOM05D004763 ORTHO05D007492 3.1e-266 921.8 670 69.3
CsaV3_4G023800 Cucumis sativus L. HOM05D004763 ORTHO05D007492 4.0e-266 921.4 662 69.8
CANSAT54G1729 Cannabis sativa HOM05D004763 ORTHO05D007492 5.2e-266 921.0 671 69.3
TWI34G0672 Tripterygium wilfordii HOM05D004763 ORTHO05D007492 1.2e-265 919.8 665 69.2
Aqoxy1G00185 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 1.5e-265 919.5 648 69.3
Hma1.2p1_1169F.1_g263300 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 3.4e-265 918.3 664 68.7
Peaxi162Scf00773g00119 Petunia axillaris HOM05D004763 ORTHO05D007492 7.5e-265 917.1 666 69.1
CBR_g31022 Chara braunii HOM05D004763 ORTHO05D007492 1.3e-264 916.4 665 69.9
Medtr2g098510 Medicago truncatula HOM05D004763 ORTHO05D007492 1.3e-264 916.4 666 68.8
SMO116G0144 Selaginella moellendorffii HOM05D004763 ORTHO05D007492 1.7e-264 916.0 655 71.3
A05p28000 Brassica napus HOM05D004763 ORTHO05D007492 3.7e-264 914.8 679 68.3
Manes.14G014500 Manihot esculenta HOM05D004763 ORTHO05D007492 6.4e-264 914.1 667 69.1
Glyma.13G342900 Glycine max HOM05D004763 ORTHO05D007492 8.3e-264 913.7 664 68.7
Phvul.005G150500 Phaseolus vulgaris HOM05D004763 ORTHO05D007492 8.3e-264 913.7 667 69.0
Psat5g288480 Pisum sativum HOM05D004763 ORTHO05D007492 8.3e-264 913.7 666 68.5
Cc01_g04070 Coffea canephora HOM05D004763 ORTHO05D007492 1.1e-263 913.3 666 68.5
QL01p006243 Quercus lobata HOM05D004763 ORTHO05D007492 1.4e-263 912.9 664 69.3
arahy.Tifrunner.gnm1.ann1.GN3GFY Arachis hypogaea HOM05D004763 ORTHO05D007492 2.4e-263 912.1 668 68.7
MELO3C014639.2 Cucumis melo HOM05D004763 ORTHO05D007492 3.2e-263 911.8 662 69.2
Potri.003G211000 Populus trichocarpa HOM05D004763 ORTHO05D007492 4.1e-263 911.4 659 69.0
HPP92_020536 Vanilla planifolia HOM05D004763 ORTHO05D007492 5.4e-263 911.0 663 69.1
Dinv36304 Davidia involucrata HOM05D004763 ORTHO05D007492 9.2e-263 910.2 666 68.8
ATR0605G091 Amborella trichopoda HOM05D004763 ORTHO05D007492 1.2e-262 909.8 661 69.1
arahy.Tifrunner.gnm1.ann1.VYK1P0 Arachis hypogaea HOM05D004763 ORTHO05D007492 2.1e-262 909.1 668 68.6
AUR62019250 Chenopodium quinoa HOM05D004763 ORTHO05D007492 2.1e-262 909.1 665 69.3
Sopen01g009200 Solanum pennellii HOM05D004763 ORTHO05D007492 2.1e-262 909.1 665 67.7
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 3.5e-262 908.3 659 69.2
Cpa.g.sc84.111 Carica papaya HOM05D004763 ORTHO05D007492 4.6e-262 907.9 693 67.1
COL.COLO4_09893 Corchorus olitorius HOM05D004763 ORTHO05D007492 4.6e-262 907.9 662 68.7
arahy.Tifrunner.gnm1.ann1.P0K6XU Arachis hypogaea HOM05D004763 ORTHO05D007492 6.0e-262 907.5 668 68.6
BraA05t21683Z Brassica rapa HOM05D004763 ORTHO05D007492 6.0e-262 907.5 687 67.4
Solyc01g014490.4 Solanum lycopersicum HOM05D004763 ORTHO05D007492 7.8e-262 907.1 665 67.4
HanXRQChr14g0451781 Helianthus annuus HOM05D004763 ORTHO05D007492 1.3e-261 906.4 669 69.2
Eucgr.B03662 Eucalyptus grandis HOM05D004763 ORTHO05D007492 2.3e-261 905.6 644 70.2
Migut.D00558 Erythranthe guttata HOM05D004763 ORTHO05D007492 3.0e-261 905.2 666 67.9
Lalb_Chr14g0372291 Lupinus albus HOM05D004763 ORTHO05D007492 3.9e-261 904.8 666 68.5
FvH4_3g43550 Fragaria vesca HOM05D004763 ORTHO05D007492 5.1e-261 904.4 665 67.8
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 5.1e-261 904.4 645 70.1
ECA238G4453 Erigeron canadensis HOM05D004763 ORTHO05D007492 1.1e-260 903.3 669 68.8
Ciclev10014511m.g Citrus clementina HOM05D004763 ORTHO05D007492 2.5e-260 902.1 641 70.8
RcHm_v2.0_Chr5g0078101 Rosa chinensis HOM05D004763 ORTHO05D007492 9.5e-260 900.2 665 67.7
Sed0013957 Sechium edule HOM05D004763 ORTHO05D007492 1.6e-259 899.4 662 68.1
BolC5t33062H Brassica oleracea HOM05D004763 ORTHO05D007492 2.1e-259 899.0 696 66.1
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 2.8e-259 898.7 674 67.1
FAN16G3272 Fragaria x ananassa HOM05D004763 ORTHO05D007492 2.8e-259 898.7 675 67.1
Os09g0279600 Oryza sativa ssp. japonica HOM05D004763 ORTHO05D007492 1.8e-258 896.0 646 69.5
MD03G1021100 Malus domestica HOM05D004763 ORTHO05D007492 2.3e-258 895.6 650 69.1
Sabra03G0153800 Salix brachista HOM05D004763 ORTHO05D007492 6.8e-258 894.0 648 69.0
Sabra03G0156000 Salix brachista HOM05D004763 ORTHO05D007492 6.8e-258 894.0 648 69.0
Lj3g0020649 Lotus japonicus HOM05D004763 ORTHO05D007492 8.9e-258 893.6 665 68.0
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 6.4e-256 887.5 664 67.6
Prupe.6G018600 Prunus persica HOM05D004763 ORTHO05D007492 1.1e-255 886.7 667 66.6
Nitab4.5_0006575g0020 Nicotiana tabacum HOM05D004763 ORTHO05D007492 1.4e-255 886.3 691 66.6
arahy.Tifrunner.gnm1.ann1.X75IXN Arachis hypogaea HOM05D004763 ORTHO05D007492 1.2e-254 883.2 706 64.4
Duzib150G1218 Durio zibethinus HOM05D004763 ORTHO05D007492 7.8e-254 880.6 692 65.8
Nitab4.5_0003069g0050 Nicotiana tabacum HOM05D004763 ORTHO05D007492 8.1e-251 870.5 678 66.7
PGR102G0325 Punica granatum HOM05D004763 ORTHO05D007492 2.9e-248 862.1 640 67.8
Aa31LG8G7590 Aethionema arabicum HOM05D004763 ORTHO05D007492 9.3e-247 857.1 650 67.7
SGA_v2.0_scaffold1G00797 Striga asiatica HOM05D004763 ORTHO05D007492 7.3e-244 847.4 687 63.3
Rhsim01G0189300 Rhododendron simsii HOM05D004763 ORTHO05D007492 1.9e-239 832.8 750 59.2
Ah.04g161760 Amaranthus hybridus HOM05D004763 ORTHO05D007492 2.7e-230 802.4 665 62.6
Lsat_1_v5_gn_2_101121 Lactuca sativa HOM05D004763 ORTHO05D007492 6.0e-230 801.2 690 61.9
Actinidia39377 Actinidia chinensis HOM05D004763 ORTHO05D007492 4.3e-228 795.0 666 62.2
CARHR096610 Cardamine hirsuta HOM05D004763 ORTHO05D007492 4.5e-225 785.0 590 67.3
Atru.chr3.2503 Acer truncatum HOM05D004763 ORTHO05D007492 6.5e-224 781.2 580 67.6
Aqoxy381s001 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 1.0e-221 773.9 654 62.1
Ca_01270_v3 Cicer arietinum L. HOM05D004763 ORTHO05D007492 1.1e-218 763.8 596 65.3
DCAR_024396 Daucus carota HOM05D004763 ORTHO05D007492 1.4e-218 763.5 660 61.1
Hma1.2p1_1169F.1_g263310 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 1.1e-215 753.8 509 70.3
FAN21G2003 Fragaria x ananassa HOM05D004763 ORTHO05D007492 2.8e-211 739.2 638 61.8
FAN11G2145 Fragaria x ananassa HOM05D004763 ORTHO05D007492 1.4e-207 726.9 702 56.1
Lj4g0010878 Lotus japonicus HOM05D004763 ORTHO05D007492 2.3e-205 719.5 663 58.8
Cre01.g019750 Chlamydomonas reinhardtii HOM05D004763 ORTHO05D007492 2.2e-203 713.0 691 54.6
FAN11G0713 Fragaria x ananassa HOM05D004763 ORTHO05D007492 2.2e-203 713.0 702 55.0
Potri.T085401 Populus trichocarpa HOM05D004763 ORTHO05D007492 5.3e-194 681.8 443 75.8
Zm00001eb308780 Zea mays HOM05D004763 ORTHO05D007492 1.6e-185 653.7 463 67.8
MCO09G243 Micromonas commoda HOM05D004763 ORTHO05D007492 1.8e-178 630.2 666 52.4
PRCOL_00005940 Prasinoderma coloniale HOM05D004763 ORTHO05D007492 4.4e-172 609.0 676 51.0
Lsat_1_v5_gn_1_127001 Lactuca sativa HOM05D004763 ORTHO05D007492 1.6e-161 573.9 525 56.6
SEGI_32015 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 2.3e-160 570.1 382 73.6
MBI01_g15753_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D007492 1.9e-138 497.3 353 72.5
CAN.G646.1 Capsicum annuum HOM05D004763 ORTHO05D007492 1.5e-135 487.6 358 68.2
PGSC0003DMG401029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 2.8e-134 483.4 379 65.2
ClCG02G023620 Citrullus lanatus HOM05D004763 ORTHO05D007492 2.4e-133 480.3 363 68.3
Lsat_1_v5_gn_1_127121 Lactuca sativa HOM05D004763 ORTHO05D007492 8.7e-120 435.3 577 45.6
Lju1319A4T15 Lonicera japonica HOM05D004763 ORTHO05D007492 5.3e-117 426.0 305 67.2
PGSC0003DMG402029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 5.3e-117 426.0 305 67.5
CAN.G442.1 Capsicum annuum HOM05D004763 ORTHO05D007492 2.2e-115 420.6 306 67.0
Lj1A366T12 Lonicera japonica HOM05D004763 ORTHO05D007492 3.2e-106 390.2 365 57.5
Lsat_1_v5_gn_1_126981 Lactuca sativa HOM05D004763 ORTHO05D007492 1.6e-97 361.3 465 46.7
Lj1C366G5 Lonicera japonica HOM05D004763 ORTHO05D007492 1.9e-95 354.4 297 61.3
SEGI_39045 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 3.9e-80 303.5 215 70.2
Actinidia06319 Actinidia chinensis HOM05D004763 ORTHO05D007492 1.4e-64 251.9 214 59.3
Lsat_1_v5_gn_1_126941 Lactuca sativa HOM05D004763 ORTHO05D007492 3.0e-48 197.6 151 62.3
Eucgr.B03660 Eucalyptus grandis HOM05D004763 ORTHO05D007492 2.9e-46 191.0 156 60.3
Oeu036968.1 Olea europaea HOM05D004763 ORTHO05D007492 2.3e-43 181.4 104 76.0
Lju1319C4G3 Lonicera japonica HOM05D004763 ORTHO05D014896 3.9e-43 180.6 185 58.9
TPR.G29743 Trifolium pratense HOM05D004763 ORTHO05D007492 5.6e-42 176.8 212 47.6
TPR.G29742 Trifolium pratense HOM05D004763 ORTHO05D007492 4.4e-39 167.2 246 44.7
Lsat_1_v5_gn_1_127161 Lactuca sativa HOM05D004763 ORTHO05D007492 3.3e-34 151.0 157 52.9
Lsat_1_v5_gn_1_127201 Lactuca sativa HOM05D004763 ORTHO05D007492 2.2e-30 138.3 391 28.9
Aa31LG8G7550 Aethionema arabicum HOM05D004763 ORTHO05D007492 1.3e-27 129.0 460 30.9
MBI04_g09599_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 2.5e-26 124.8 130 53.1
MBI09_g40619_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D019264 1.6e-25 122.1 86 70.9
Ca_01269_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 2.1e-25 121.7 86 73.3
MBI02_g24793_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 2.1e-25 121.7 130 52.3
Thecc.03G073800 Theobroma cacao HOM05D004763 ORTHO05D019264 8.4e-22 109.8 96 56.2
PGSC0003DMG400012096 Solanum tuberosum HOM05D004763 ORTHO05D014896 1.4e-21 109.0 86 64.0
PGSC0003DMG401017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 7.8e-20 103.2 126 44.4
Lsat_1_v5_gn_3_118680 Lactuca sativa HOM05D004763 ORTHO05D007492 1.6e-17 95.5 55 83.6
TWI60G1170 Tripterygium wilfordii HOM05D004763 ORTHO05D014896 4.9e-14 84.0 49 83.7
arahy.Tifrunner.gnm1.ann1.50I1V9 Arachis hypogaea HOM05D004763 ORTHO05D014896 2.4e-13 81.6 68 63.2
arahy.Tifrunner.gnm1.ann1.F7UR4V Arachis hypogaea HOM05D004763 ORTHO05D014896 5.4e-13 80.5 68 61.8
arahy.Tifrunner.gnm1.ann1.G1IAFF Arachis hypogaea HOM05D004763 ORTHO05D014896 5.4e-13 80.5 82 56.1
Lsat_1_v5_gn_1_125620 Lactuca sativa HOM05D004763 ORTHO05D007492 9.3e-13 79.7 210 32.4
Lju1319A4T14 Lonicera japonica HOM05D004763 ORTHO05D019264 1.1e-10 72.8 52 67.3
Lsat_1_v5_gn_1_126960 Lactuca sativa HOM05D004763 ORTHO05D012314 2.1e-09 68.6 68 47.1
arahy.Tifrunner.gnm1.ann1.65KXHR Arachis hypogaea HOM05D004763 ORTHO05D014896 3.6e-09 67.8 47 68.1
PGSC0003DMG400019106 Solanum tuberosum HOM05D004763 ORTHO05D007492 3.6e-09 67.8 37 83.8
arahy.Tifrunner.gnm1.ann1.YT3XVJ Arachis hypogaea HOM05D012186 ORTHO05D009594 5.3e-08 63.9 62 54.8
Solyc11g028310.3 Solanum lycopersicum HOM05D004763 ORTHO05D026177 6.9e-08 63.5 62 58.1
Solyc11g028340.3 Solanum lycopersicum HOM05D004763 ORTHO05D019264 7.6e-07 60.1 47 55.3
Sopen04g015550 Solanum pennellii HOM05D000004 ORTHO05D000002 2.9e-06 58.2 133 38.3
Lsat_1_v5_gn_8_146221 Lactuca sativa HOM05D004763 ORTHO05D014896 3.8e-06 57.8 74 48.6
PGSC0003DMG400026817 Solanum tuberosum HOM05D004763 ORTHO05D026177 3.8e-06 57.8 81 46.9


User provided reference genes

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