Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0022s0120 Marchantia polymorpha HOM05D005707 ORTHO05D007276 0.0e+00 1998.8 999 100.0
AagrBONN_evm.TU.Sc2ySwM_344.1573 Anthoceros agrestis HOM05D005707 ORTHO05D007276 0.0e+00 1443.7 985 72.8
Pp3c25_5560 Physcomitrium patens HOM05D005707 ORTHO05D007276 0.0e+00 1367.4 1022 68.0
SEGI_38374 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 0.0e+00 1303.1 1000 65.9
ATR0626G192 Amborella trichopoda HOM05D005707 ORTHO05D007276 0.0e+00 1255.0 996 63.0
SMO329G0026 Selaginella moellendorffii HOM05D005707 ORTHO05D007276 0.0e+00 1219.9 979 63.6
TAR626G1120 Trochodendron aralioides HOM05D005707 ORTHO05D007276 0.0e+00 1218.8 999 61.3
Nn1g03422 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1206.4 998 59.6
MELO3C025972.2 Cucumis melo HOM05D005707 ORTHO05D007276 0.0e+00 1204.9 999 61.2
MBI16_g36319_MAGBIO Magnolia biondii HOM05D005707 ORTHO05D007276 0.0e+00 1203.3 999 60.7
Eucgr.A01050 Eucalyptus grandis HOM05D005707 ORTHO05D007276 0.0e+00 1200.7 987 61.3
PGR142G3494 Punica granatum HOM05D005707 ORTHO05D007276 0.0e+00 1200.7 1000 60.1
Dinv07863 Davidia involucrata HOM05D005707 ORTHO05D007276 0.0e+00 1199.5 978 61.6
Sabra14G0126000 Salix brachista HOM05D005707 ORTHO05D007276 0.0e+00 1198.7 1002 60.0
Nitab4.5_0001082g0050 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1198.3 997 60.3
CANSAT64G1567 Cannabis sativa HOM05D005707 ORTHO05D007276 0.0e+00 1198.0 998 59.9
Cfa007084 Carpinus fangiana HOM05D005707 ORTHO05D007276 0.0e+00 1197.2 998 60.1
Manes.12G065301 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1196.8 993 60.0
Haze_03608 Corylus avellana HOM05D005707 ORTHO05D007276 0.0e+00 1195.6 998 59.6
Potri.014G165400 Populus trichocarpa HOM05D005707 ORTHO05D007276 0.0e+00 1195.3 1000 60.2
Nn1g03246 Nelumbo nucifera HOM05D005707 ORTHO05D007276 0.0e+00 1194.5 998 59.3
CsaV3_6G009510 Cucumis sativus L. HOM05D005707 ORTHO05D007276 0.0e+00 1194.1 995 60.3
PSO675G5925 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1193.7 982 61.3
CAN.G308.64 Capsicum annuum HOM05D005707 ORTHO05D007276 0.0e+00 1192.2 996 60.1
Solyc06g065170.4 Solanum lycopersicum HOM05D005707 ORTHO05D007276 0.0e+00 1192.2 997 59.8
ClCG02G009340 Citrullus lanatus HOM05D005707 ORTHO05D007276 0.0e+00 1191.8 979 61.8
Gohir.D11G156360 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1191.4 998 59.5
Peaxi162Scf00268g00614 Petunia axillaris HOM05D005707 ORTHO05D007276 0.0e+00 1191.4 996 60.0
Gorai.007G166700 Gossypium raimondii HOM05D005707 ORTHO05D007276 0.0e+00 1191.0 998 59.5
PSO732G0538 Papaver somniferum HOM05D005707 ORTHO05D007276 0.0e+00 1191.0 982 60.8
Manes.13G062700 Manihot esculenta HOM05D005707 ORTHO05D007276 0.0e+00 1188.7 998 59.3
Sopen06g023670 Solanum pennellii HOM05D005707 ORTHO05D007276 0.0e+00 1188.7 999 59.8
PGSC0003DMG400026068 Solanum tuberosum HOM05D005707 ORTHO05D007276 0.0e+00 1188.7 997 59.4
CiPaw.07G002400 Carya illinoinensis HOM05D005707 ORTHO05D007276 0.0e+00 1186.4 997 60.1
Gohir.A11G149550 Gossypium hirsutum HOM05D005707 ORTHO05D007276 0.0e+00 1186.4 998 59.4
Nitab4.5_0000303g0290 Nicotiana tabacum HOM05D005707 ORTHO05D007276 0.0e+00 1186.0 997 59.8
Sed0013138 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1184.5 997 60.9
Prupe.3G200600 Prunus persica HOM05D005707 ORTHO05D007276 0.0e+00 1182.9 990 60.5
TWI75G1501 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1182.9 985 61.2
GSVIVG01030049001 Vitis vinifera HOM05D005707 ORTHO05D007276 0.0e+00 1182.9 1001 60.3
Oeu040469.1 Olea europaea HOM05D005707 ORTHO05D007276 0.0e+00 1182.2 996 59.4
Hma1.2p1_1267F.1_g271460 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 0.0e+00 1181.8 978 60.4
Glyma.07G119500 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1180.6 1006 59.7
Actinidia09778 Actinidia chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1180.2 995 59.7
HanXRQChr03g0075251 Helianthus annuus HOM05D005707 ORTHO05D007276 0.0e+00 1178.7 984 60.0
CSS0003308 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1178.3 1004 59.7
CSS0049316 Camellia sinensis var. sinensis HOM05D005707 ORTHO05D007276 0.0e+00 1178.3 1004 59.7
Lsat_1_v5_gn_0_5460 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1177.9 997 59.3
MD17G1113900 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1177.5 994 60.2
Atru.BG.42.p Acer truncatum HOM05D005707 ORTHO05D007276 0.0e+00 1177.2 978 60.3
VMungo0331G1616 Vigna mungo HOM05D005707 ORTHO05D007276 0.0e+00 1177.2 1005 59.2
ECA240G2058 Erigeron canadensis HOM05D005707 ORTHO05D007276 0.0e+00 1176.8 981 59.8
RcHm_v2.0_Chr2g0156491 Rosa chinensis HOM05D005707 ORTHO05D007276 0.0e+00 1175.6 981 60.8
THA.LOC104808851 Tarenaya hassleriana HOM05D005707 ORTHO05D007276 0.0e+00 1175.6 995 59.7
Duzib138G1526 Durio zibethinus HOM05D005707 ORTHO05D007276 0.0e+00 1174.5 1002 59.0
Glyma.03G104400 Glycine max HOM05D005707 ORTHO05D007276 0.0e+00 1174.5 1007 59.7
Lj1C792T2 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1174.5 997 59.4
MSTRG.14925 Avicennia marina HOM05D005707 ORTHO05D007276 0.0e+00 1174.1 985 59.6
MD09G1123500 Malus domestica HOM05D005707 ORTHO05D007276 0.0e+00 1173.7 985 60.6
A07p06540 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1172.5 977 60.5
Aqoxy2G03044 Aquilegia oxysepala HOM05D005707 ORTHO05D007276 0.0e+00 1172.1 1001 59.2
Carub.0003s2668 Capsella rubella HOM05D005707 ORTHO05D007276 0.0e+00 1172.1 983 59.9
Phvul.010G042100 Phaseolus vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1171.8 1007 58.7
Migut.M00030 Erythranthe guttata HOM05D005707 ORTHO05D007276 0.0e+00 1171.4 1000 59.4
FvH4_6g40910 Fragaria vesca HOM05D005707 ORTHO05D007276 0.0e+00 1171.4 978 60.3
TWI18G1214 Tripterygium wilfordii HOM05D005707 ORTHO05D007276 0.0e+00 1171.0 997 59.9
arahy.Tifrunner.gnm1.ann1.T3MKLR Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1170.6 1006 58.7
Thhalv10002393m.g Eutrema salsugineum HOM05D005707 ORTHO05D007276 0.0e+00 1170.2 977 60.0
FAN14G2372 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1170.2 978 60.2
Zm00001eb420950 Zea mays HOM05D005707 ORTHO05D007276 0.0e+00 1170.2 998 58.1
Sp3g23690 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1169.8 977 60.2
SpUn0142_0010 Schrenkiella parvula HOM05D005707 ORTHO05D007276 0.0e+00 1169.8 977 60.2
AL3G42770 Arabidopsis lyrata HOM05D005707 ORTHO05D007276 0.0e+00 1169.5 984 59.8
BraA07t28449Z Brassica rapa HOM05D005707 ORTHO05D007276 0.0e+00 1169.1 977 60.6
BcaC06g35905 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1167.5 977 60.2
BolC7t41423H Brassica oleracea HOM05D005707 ORTHO05D007276 0.0e+00 1167.5 977 60.2
Ca_27368_v3 Cicer arietinum L. HOM05D005707 ORTHO05D007276 0.0e+00 1166.4 1011 58.8
FAN05G2777 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1165.6 978 59.8
Rhsim06G0174400 Rhododendron simsii HOM05D005707 ORTHO05D007276 0.0e+00 1165.6 997 59.0
Ciclev10018207m.g Citrus clementina HOM05D005707 ORTHO05D007276 0.0e+00 1165.2 978 59.8
Os04g0382700 Oryza sativa ssp. japonica HOM05D005707 ORTHO05D007276 0.0e+00 1164.8 987 58.1
C07p09820 Brassica napus HOM05D005707 ORTHO05D007276 0.0e+00 1164.4 977 60.1
Cc07_g12010 Coffea canephora HOM05D005707 ORTHO05D007276 0.0e+00 1164.1 982 59.9
Medtr1g019500 Medicago truncatula HOM05D005707 ORTHO05D007276 0.0e+00 1164.1 1012 58.8
CARHR103040 Cardamine hirsuta HOM05D005707 ORTHO05D007276 0.0e+00 1163.7 977 60.1
Lsat_1_v5_gn_9_90020 Lactuca sativa HOM05D005707 ORTHO05D007276 0.0e+00 1163.7 1003 58.8
Lj1g0027558 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1163.7 1009 58.9
Lalb_Chr19g0124221 Lupinus albus HOM05D005707 ORTHO05D007276 0.0e+00 1163.7 1011 59.1
Lj6g0020016 Lotus japonicus HOM05D005707 ORTHO05D007276 0.0e+00 1160.6 998 58.7
BcaB06g26833 Brassica carinata HOM05D005707 ORTHO05D007276 0.0e+00 1159.8 978 59.8
FAN02G0692 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1159.1 978 59.8
QL06p053011 Quercus lobata HOM05D005707 ORTHO05D007276 0.0e+00 1159.1 1011 58.8
Ah.15g094340 Amaranthus hybridus HOM05D005707 ORTHO05D007276 0.0e+00 1158.7 994 59.0
Lj8A134G73 Lonicera japonica HOM05D005707 ORTHO05D007276 0.0e+00 1158.7 994 58.8
Sed0020801 Sechium edule HOM05D005707 ORTHO05D007276 0.0e+00 1158.7 996 59.1
FAN09G4573 Fragaria x ananassa HOM05D005707 ORTHO05D007276 0.0e+00 1157.9 978 59.4
AT2G05170 Arabidopsis thaliana HOM05D005707 ORTHO05D007276 0.0e+00 1157.1 983 59.8
Hund18608 Selenicereus undatus HOM05D005707 ORTHO05D007276 0.0e+00 1157.1 1010 57.7
AUR62001346 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1148.7 994 58.5
arahy.Tifrunner.gnm1.ann1.DQM4AF Arachis hypogaea HOM05D005707 ORTHO05D007276 0.0e+00 1148.3 1040 56.7
AUR62025658 Chenopodium quinoa HOM05D005707 ORTHO05D007276 0.0e+00 1148.3 996 57.8
DCAR_012906 Daucus carota HOM05D005707 ORTHO05D007276 0.0e+00 1144.8 980 58.7
EL10Ac7g18165 Beta vulgaris HOM05D005707 ORTHO05D007276 0.0e+00 1139.4 992 57.7
TPR.G3804 Trifolium pratense HOM05D005707 ORTHO05D007276 0.0e+00 1139.4 1008 57.8
Aa31LG9G17700 Aethionema arabicum HOM05D005707 ORTHO05D007276 0.0e+00 1136.7 994 57.9
SGA_v2.0_scaffold73G24514 Striga asiatica HOM05D005707 ORTHO05D007276 0.0e+00 1122.1 985 57.5
vmacro12103 Vaccinium macrocarpon HOM05D005707 ORTHO05D007276 0.0e+00 1109.0 999 57.3
unitig_37.g12597 Utricularia gibba HOM05D005707 ORTHO05D007276 0.0e+00 1092.4 980 55.8
COL.COLO4_09234 Corchorus olitorius HOM05D005707 ORTHO05D007276 0.0e+00 1076.6 1008 55.1
Thecc.01G191800 Theobroma cacao HOM05D005707 ORTHO05D007276 6.6e-297 1024.2 873 59.1
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 2.1e-295 1019.2 993 53.8
DCAR_028089 Daucus carota HOM05D005707 ORTHO05D007276 2.7e-290 1002.3 892 57.5
Psat6g013160 Pisum sativum HOM05D005707 ORTHO05D007276 4.6e-282 974.9 886 57.2
Lalb_Chr01g0023301 Lupinus albus HOM05D005707 ORTHO05D007276 1.8e-270 936.4 774 60.7
Sc15g0001000 Simmondsia chinensis HOM05D005707 ORTHO05D007276 8.9e-262 907.5 740 62.0
Cpa.g.sc211.13 Carica papaya HOM05D005707 ORTHO05D007276 5.1e-249 865.1 998 47.3
CBR_g20017 Chara braunii HOM05D005707 ORTHO05D007276 7.6e-245 851.3 1034 46.3
Hma1.2p1_2056F.1_g312820 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 2.1e-231 806.6 633 62.7
Hma1.2p1_1267F.1_g271470 Hydrangea macrophylla HOM05D005707 ORTHO05D007276 1.0e-228 797.7 631 62.4
CDE12G0215 Ceratophyllum demersum HOM05D005707 ORTHO05D007276 3.7e-223 779.2 761 55.2
Lsat_1_v5_gn_9_104540 Lactuca sativa HOM05D005707 ORTHO05D007276 3.6e-162 576.6 461 62.3
HPP92_028369 Vanilla planifolia HOM05D005707 ORTHO05D007276 2.4e-137 494.2 473 53.3
Cre02.g095074 Chlamydomonas reinhardtii HOM05D005707 ORTHO05D007276 2.1e-117 427.9 1109 29.1
PRCOL_00006472 Prasinoderma coloniale HOM05D005707 ORTHO05D007276 2.6e-112 411.0 682 38.9
HPP92_028368 Vanilla planifolia HOM05D005707 ORTHO05D007276 2.6e-104 384.4 305 59.0
SEGI_06176 Sequoiadendron giganteum HOM05D005707 ORTHO05D007276 4.3e-62 244.2 302 45.7
Lalb_Chr01g0023291 Lupinus albus HOM05D005707 ORTHO05D007276 3.9e-55 221.1 203 55.2
Nn6g32392 Nelumbo nucifera HOM05D005707 ORTHO05D007276 4.9e-50 204.1 173 57.2
HPP92_014038 Vanilla planifolia HOM05D005707 ORTHO05D007276 6.4e-50 203.8 176 59.1
Nn6g32391 Nelumbo nucifera HOM05D005707 ORTHO05D007276 3.5e-40 171.4 124 64.5
Peaxi162Scf00585g00082 Petunia axillaris HOM05D000636 ORTHO05D002338 4.3e-38 164.5 131 61.1
HPP92_014037 Vanilla planifolia HOM05D005707 ORTHO05D048631 4.1e-33 147.9 140 56.4
HPP92_014036 Vanilla planifolia HOM05D005707 ORTHO05D007276 8.6e-31 140.2 199 39.7
Nn2g13354 Nelumbo nucifera HOM05D005707 ORTHO05D007276 3.0e-23 115.2 64 76.6
VMungo0331G0660 Vigna mungo HOM05D000100 ORTHO05D000052 4.5e-11 74.7 80 50.0


User provided reference genes

Program Settings