Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0011s0050 Marchantia polymorpha HOM05D003939 ORTHO05D005979 0.0e+00 3548.8 1848 100.0
Pp3c15_14600 Physcomitrium patens HOM05D003939 ORTHO05D005979 0.0e+00 2003.4 1839 59.7
AagrBONN_evm.TU.Sc2ySwM_344.3096 Anthoceros agrestis HOM05D003939 ORTHO05D005979 0.0e+00 1814.3 1816 56.1
SMO116G0168 Selaginella moellendorffii HOM05D003939 ORTHO05D005979 0.0e+00 1763.0 1834 54.2
Manes.01G097400 Manihot esculenta HOM05D003939 ORTHO05D005979 0.0e+00 1483.4 1808 47.0
Potri.017G092600 Populus trichocarpa HOM05D003939 ORTHO05D005979 0.0e+00 1482.6 1817 46.7
Nn3g17411 Nelumbo nucifera HOM05D003939 ORTHO05D005979 0.0e+00 1477.6 1779 47.1
Ciclev10010894m.g Citrus clementina HOM05D003939 ORTHO05D005979 0.0e+00 1474.1 1878 45.5
Duzib264G0523 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 1469.1 1821 46.0
QL02p067905 Quercus lobata HOM05D003939 ORTHO05D005979 0.0e+00 1468.0 1831 45.7
CSS0011135 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 0.0e+00 1465.7 1815 46.4
Thecc.04G092900 Theobroma cacao HOM05D003939 ORTHO05D005979 0.0e+00 1458.7 1886 45.0
CANSAT64G0725 Cannabis sativa HOM05D003939 ORTHO05D005979 0.0e+00 1457.6 1801 46.2
Cfa007652 Carpinus fangiana HOM05D003939 ORTHO05D005979 0.0e+00 1449.5 1893 45.3
COL.COLO4_21400 Corchorus olitorius HOM05D003939 ORTHO05D005979 0.0e+00 1449.5 1883 44.7
PGR083G1596 Punica granatum HOM05D003939 ORTHO05D005979 0.0e+00 1449.1 1842 45.3
MD17G1057600 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 1448.0 1839 46.2
Gorai.006G011000 Gossypium raimondii HOM05D003939 ORTHO05D005979 0.0e+00 1442.6 1888 44.9
RcHm_v2.0_Chr2g0166131 Rosa chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1441.0 1814 47.1
CAN.G381.1 Capsicum annuum HOM05D003939 ORTHO05D005979 0.0e+00 1440.2 1801 46.7
Gohir.A09G010200 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 1439.9 1817 46.0
FAN05G1397 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 1436.8 1813 46.9
FAN09G4101 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 1436.4 1817 46.8
Prupe.3G256700 Prunus persica HOM05D003939 ORTHO05D005979 0.0e+00 1436.4 1830 46.0
Eucgr.J01370 Eucalyptus grandis HOM05D003939 ORTHO05D005979 0.0e+00 1435.6 1821 45.2
Aqoxy3G03594 Aquilegia oxysepala HOM05D003939 ORTHO05D005979 0.0e+00 1434.9 1767 46.3
FvH4_6g47080 Fragaria vesca HOM05D003939 ORTHO05D005979 0.0e+00 1434.5 1817 46.8
TWI60G0125 Tripterygium wilfordii HOM05D003939 ORTHO05D005979 0.0e+00 1432.5 1817 46.1
Sabra17G0081700 Salix brachista HOM05D003939 ORTHO05D005979 0.0e+00 1432.2 1855 45.0
Sopen03g014250 Solanum pennellii HOM05D003939 ORTHO05D005979 0.0e+00 1431.0 1785 46.6
MD09G1064300 Malus domestica HOM05D003939 ORTHO05D005979 0.0e+00 1430.6 1816 46.0
FAN02G0596 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 1430.2 1824 46.7
PSO013G0104 Papaver somniferum HOM05D003939 ORTHO05D005979 0.0e+00 1426.8 1817 46.0
Atru.chr8.419 Acer truncatum HOM05D003939 ORTHO05D005979 0.0e+00 1426.4 1618 49.1
GSVIVG01011514001 Vitis vinifera HOM05D003939 ORTHO05D005979 0.0e+00 1426.4 1804 46.1
ATR0064G076 Amborella trichopoda HOM05D003939 ORTHO05D005979 0.0e+00 1420.6 1531 51.5
Cc07_g03930 Coffea canephora HOM05D003939 ORTHO05D005979 0.0e+00 1417.5 1780 46.5
Dinv33821 Davidia involucrata HOM05D003939 ORTHO05D005979 0.0e+00 1417.5 1790 46.0
Sed0008583 Sechium edule HOM05D003939 ORTHO05D005979 0.0e+00 1405.2 1829 45.4
arahy.Tifrunner.gnm1.ann1.U2J8P8 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 1404.0 1831 44.7
Lj2g0019419 Lotus japonicus HOM05D003939 ORTHO05D005979 0.0e+00 1401.3 1887 44.9
DCAR_025422 Daucus carota HOM05D003939 ORTHO05D005979 0.0e+00 1399.8 1794 45.3
AUR62018173 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 1398.3 1794 46.0
Glyma.13G057300 Glycine max HOM05D003939 ORTHO05D005979 0.0e+00 1397.5 1801 45.4
AUR62042423 Chenopodium quinoa HOM05D003939 ORTHO05D005979 0.0e+00 1396.7 1791 46.0
MBI19_g03793_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D005979 0.0e+00 1396.3 1531 50.4
Migut.H00638 Erythranthe guttata HOM05D003939 ORTHO05D005979 0.0e+00 1394.0 1821 44.9
FAN14G2443 Fragaria x ananassa HOM05D003939 ORTHO05D005979 0.0e+00 1392.5 1817 46.0
SGA_v2.0_scaffold52G19175 Striga asiatica HOM05D003939 ORTHO05D005979 0.0e+00 1392.5 1805 45.5
Thhalv10012417m.g Eutrema salsugineum HOM05D003939 ORTHO05D005979 0.0e+00 1389.8 1816 45.3
arahy.Tifrunner.gnm1.ann1.HNPA74 Arachis hypogaea HOM05D003939 ORTHO05D005979 0.0e+00 1388.6 1867 43.9
Lalb_Chr06g0175001 Lupinus albus HOM05D003939 ORTHO05D005979 0.0e+00 1387.5 1801 45.3
Solyc03g059420.4 Solanum lycopersicum HOM05D003939 ORTHO05D005979 0.0e+00 1385.2 1598 48.2
BolC2t06707H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 1384.4 1819 44.8
VMungo0464G1977 Vigna mungo HOM05D003939 ORTHO05D005979 0.0e+00 1382.1 1933 44.2
Rhsim10G0043700 Rhododendron simsii HOM05D003939 ORTHO05D005979 0.0e+00 1381.3 1924 43.7
A02p03080 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1379.4 1816 45.0
vmacro05651 Vaccinium macrocarpon HOM05D003939 ORTHO05D005979 0.0e+00 1379.4 1809 44.9
THA.LOC104821002 Tarenaya hassleriana HOM05D003939 ORTHO05D005979 0.0e+00 1379.0 1853 43.8
C02p07770 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1378.2 1823 44.7
CsaV3_4G008740 Cucumis sativus L. HOM05D003939 ORTHO05D005979 0.0e+00 1378.2 1656 47.0
AL6G26400 Arabidopsis lyrata HOM05D003939 ORTHO05D005979 0.0e+00 1377.5 1807 44.5
AT5G15540 Arabidopsis thaliana HOM05D003939 ORTHO05D005979 0.0e+00 1376.3 1811 44.7
C09p61660 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1376.3 1813 44.5
BolC9t59004H Brassica oleracea HOM05D003939 ORTHO05D005979 0.0e+00 1376.3 1813 44.5
Carub.0006s1371 Capsella rubella HOM05D003939 ORTHO05D005979 0.0e+00 1376.3 1816 45.6
Nitab4.5_0002960g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1375.5 1595 48.1
MSTRG.3009 Avicennia marina HOM05D003939 ORTHO05D005979 0.0e+00 1373.2 1825 44.5
Phvul.004G035100 Phaseolus vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 1372.5 1873 44.0
Medtr6g015060 Medicago truncatula HOM05D003939 ORTHO05D005979 0.0e+00 1370.9 1882 43.5
Sc10g0004620 Simmondsia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1369.4 1614 48.0
Sp6g28560 Schrenkiella parvula HOM05D003939 ORTHO05D005979 0.0e+00 1367.1 1835 44.5
BraA02t05278Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1362.1 1820 44.3
ECA246G3607 Erigeron canadensis HOM05D003939 ORTHO05D005979 0.0e+00 1360.9 1797 45.3
A10p23410 Brassica napus HOM05D003939 ORTHO05D005979 0.0e+00 1359.7 1820 44.9
BraA10t44409Z Brassica rapa HOM05D003939 ORTHO05D005979 0.0e+00 1359.7 1820 44.9
Ca_04301_v3 Cicer arietinum L. HOM05D003939 ORTHO05D005979 0.0e+00 1351.3 1648 47.0
Actinidia01988 Actinidia chinensis HOM05D003939 ORTHO05D005979 0.0e+00 1349.7 1521 50.1
Duzib187G1101 Durio zibethinus HOM05D003939 ORTHO05D005979 0.0e+00 1345.9 1889 42.5
Hund13156 Selenicereus undatus HOM05D003939 ORTHO05D005979 0.0e+00 1338.9 1904 43.6
HanXRQChr17g0546541 Helianthus annuus HOM05D003939 ORTHO05D005979 0.0e+00 1334.3 1800 44.9
Aa31LG11G14050 Aethionema arabicum HOM05D003939 ORTHO05D005979 0.0e+00 1333.9 1832 43.6
Lsat_1_v5_gn_3_98161 Lactuca sativa HOM05D003939 ORTHO05D005979 0.0e+00 1317.8 1846 44.4
EL10Ac2g03123 Beta vulgaris HOM05D003939 ORTHO05D005979 0.0e+00 1313.5 1854 43.6
MELO3C016065.2 Cucumis melo HOM05D003939 ORTHO05D005979 0.0e+00 1308.5 1814 44.9
ClCG07G007360 Citrullus lanatus HOM05D003939 ORTHO05D005979 0.0e+00 1307.7 1534 48.2
TPR.G10018 Trifolium pratense HOM05D003939 ORTHO05D005979 0.0e+00 1303.9 1785 43.6
Peaxi162Scf00451g00326 Petunia axillaris HOM05D003939 ORTHO05D005979 0.0e+00 1302.0 1592 46.8
Haze_14442 Corylus avellana HOM05D003939 ORTHO05D005979 0.0e+00 1291.2 1488 48.9
Ah.10g032070 Amaranthus hybridus HOM05D003939 ORTHO05D005979 0.0e+00 1280.8 1885 42.1
Nitab4.5_0001637g0010 Nicotiana tabacum HOM05D003939 ORTHO05D005979 0.0e+00 1265.4 1601 45.8
Lju41A4T71 Lonicera japonica HOM05D003939 ORTHO05D005979 0.0e+00 1243.4 1524 46.5
Zm00001eb298600 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1242.3 1774 43.0
Zm00001eb118180 Zea mays HOM05D003939 ORTHO05D005979 0.0e+00 1221.8 1645 44.1
Psat1g067400 Pisum sativum HOM05D003939 ORTHO05D005979 0.0e+00 1219.1 1896 41.2
SEGI_00927 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 0.0e+00 1219.1 1148 58.3
CBR_g19320 Chara braunii HOM05D003939 ORTHO05D005979 0.0e+00 1217.6 1532 47.3
SHI25772 Sapria himalayana HOM05D003939 ORTHO05D005979 0.0e+00 1199.5 1740 42.5
Gohir.D09G009300 Gossypium hirsutum HOM05D003939 ORTHO05D005979 0.0e+00 1148.3 1388 46.5
PSO063G3321 Papaver somniferum HOM05D003939 ORTHO05D005979 2.5e-294 1016.5 1491 41.9
TAR371G0557 Trochodendron aralioides HOM05D003939 ORTHO05D005979 1.4e-276 957.6 918 56.1
HPP92_012299 Vanilla planifolia HOM05D003939 ORTHO05D005979 4.8e-253 879.4 997 49.9
Os07g0110400 Oryza sativa ssp. japonica HOM05D003939 ORTHO05D005979 1.1e-233 815.1 883 51.5
Oeu007060.1 Olea europaea HOM05D003939 ORTHO05D005979 7.3e-225 785.8 925 49.0
Glyma.19G029100 Glycine max HOM05D003939 ORTHO05D005979 4.4e-206 723.4 1042 41.7
CARHR197770 Cardamine hirsuta HOM05D003939 ORTHO05D005979 2.3e-178 631.3 648 51.7
SEGI_06328 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 2.5e-148 531.6 490 58.6
TAR371G1006 Trochodendron aralioides HOM05D003939 ORTHO05D005979 3.8e-141 507.7 841 40.4
HPP92_012253 Vanilla planifolia HOM05D003939 ORTHO05D005979 3.7e-136 491.1 934 36.4
Psat0s5863g0080 Pisum sativum HOM05D003939 ORTHO05D005979 3.7e-128 464.5 520 49.2
CiPaw.03G089600 Carya illinoinensis HOM05D003939 ORTHO05D005979 1.7e-117 429.1 683 40.1
Glyma.19G029000 Glycine max HOM05D003939 ORTHO05D005979 5.2e-114 417.5 509 47.5
HPP92_012298 Vanilla planifolia HOM05D003939 ORTHO05D005979 5.2e-114 417.5 755 37.1
SEGI_04445 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 5.0e-109 401.0 282 74.5
PGSC0003DMG400012376 Solanum tuberosum HOM05D003939 ORTHO05D005979 1.6e-102 379.4 450 48.9
SEGI_32509 Sequoiadendron giganteum HOM05D003939 ORTHO05D005979 5.6e-100 370.9 411 50.9
CDE04G2810 Ceratophyllum demersum HOM05D003939 ORTHO05D005979 3.1e-98 365.2 486 44.7
CSS0005126 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 2.1e-94 352.4 491 44.6
DCAR_026524 Daucus carota HOM05D003939 ORTHO05D005979 8.6e-93 347.1 562 40.6
Cpa.g.sc2744.1 Carica papaya HOM05D003939 ORTHO05D005979 4.4e-89 334.7 438 44.5
Cre06.g278269 Chlamydomonas reinhardtii HOM05D003939 ORTHO05D005979 1.6e-78 299.7 1550 23.9
CSS0039149 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 3.3e-76 292.0 480 40.6
HPP92_012254 Vanilla planifolia HOM05D003939 ORTHO05D005979 1.1e-74 287.0 329 46.8
Hma1.2p1_0481F.1_g162010 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 3.3e-68 265.4 338 46.7
Cpa.g.sc14.167 Carica papaya HOM05D003939 ORTHO05D005979 2.6e-65 255.8 302 46.0
Psat0s5863g0040 Pisum sativum HOM05D003939 ORTHO05D005979 3.7e-59 235.3 258 49.2
Gohir.1Z049344 Gossypium hirsutum HOM05D003939 ORTHO05D005979 2.6e-57 229.2 465 36.6
MCO01G540 Micromonas commoda HOM05D003939 ORTHO05D005979 8.7e-53 214.2 513 28.8
Prupe.2G279500 Prunus persica HOM05D003939 ORTHO05D005979 3.9e-45 188.7 387 34.1
BolC9t58997H Brassica oleracea HOM05D003939 ORTHO05D005979 6.7e-37 161.4 120 62.5
Psat0s9359g0040 Pisum sativum HOM05D003939 ORTHO05D005979 7.9e-30 137.9 197 42.6
HPP92_012255 Vanilla planifolia HOM05D003939 ORTHO05D005979 2.6e-28 132.9 383 30.8
SEGI_31617 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 8.5e-24 117.9 299 31.1
CiPaw.03G089700 Carya illinoinensis HOM05D003939 ORTHO05D005979 4.2e-23 115.5 110 53.6
ClCG07G007370 Citrullus lanatus HOM05D003939 ORTHO05D005979 2.7e-22 112.8 308 28.6
CSS0004390 Camellia sinensis var. sinensis HOM05D003939 ORTHO05D005979 6.7e-21 108.2 241 32.8
Psat5g278520 Pisum sativum HOM05D003939 ORTHO05D030477 7.4e-20 104.8 95 52.6
Cpa.g.c43937 Carica papaya HOM05D003939 ORTHO05D005979 3.7e-19 102.4 70 68.6
SEGI_38119 Sequoiadendron giganteum HOM05D003939 ORTHO05D050928 4.8e-19 102.1 150 40.0
C09p61570 Brassica napus HOM05D003939 ORTHO05D005979 1.4e-18 100.5 72 62.5
CAN.G61.23 Capsicum annuum HOM05D003939 ORTHO05D005979 1.8e-18 100.1 118 42.4
Psat3g154360 Pisum sativum HOM05D003939 ORTHO05D030477 1.0e-16 94.4 93 49.5
Psat3g154320 Pisum sativum HOM05D003939 ORTHO05D030477 6.5e-16 91.7 94 47.9
TPR.G3973 Trifolium pratense HOM05D003939 ORTHO05D005979 5.2e-13 82.0 153 35.9
arahy.Tifrunner.gnm1.ann1.HI697U Arachis hypogaea HOM05D001278 ORTHO05D005979 9.8e-12 77.8 81 44.4
arahy.Tifrunner.gnm1.ann1.BV8AZF Arachis hypogaea HOM05D001278 ORTHO05D004786 2.2e-11 76.6 69 49.3
Glyma.01G130950 Glycine max HOM05D003939 ORTHO05D005979 2.2e-11 76.6 97 38.1
TAR376G0271 Trochodendron aralioides HOM05D003939 ORTHO05D009412 2.2e-11 76.6 50 70.0
MELO3C001621.2 Cucumis melo HOM05D003939 ORTHO05D005979 4.8e-11 75.5 78 51.3
MELO3C000805.2 Cucumis melo HOM05D003939 ORTHO05D005979 6.3e-11 75.1 86 43.0
TAR376G0356 Trochodendron aralioides HOM05D003939 ORTHO05D009412 6.3e-11 75.1 50 68.0
TAR629G0495 Trochodendron aralioides HOM05D003939 ORTHO05D005979 1.8e-10 73.6 59 59.3
Hma1.2p1_0481F.1_g162040 Hydrangea macrophylla HOM05D003939 ORTHO05D013368 3.5e-09 69.3 81 50.6
Atru.chr8.420 Acer truncatum HOM05D003939 ORTHO05D013368 7.7e-09 68.2 70 51.4
C09p61560 Brassica napus HOM05D003939 ORTHO05D013368 7.7e-09 68.2 102 42.2
Solyc03g059400.1 Solanum lycopersicum HOM05D003939 ORTHO05D013368 7.7e-09 68.2 69 53.6
Nitab4.5_0001637g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 1.3e-08 67.4 67 55.2
Nitab4.5_0002960g0020 Nicotiana tabacum HOM05D003939 ORTHO05D013368 6.5e-08 65.1 67 53.7
MELO3C001721.2 Cucumis melo HOM05D003939 ORTHO05D005979 1.6e-06 60.5 44 63.6
ATR0035G002 Amborella trichopoda HOM05D003939 ORTHO05D013368 2.7e-06 59.7 69 46.4
ATR1045G001 Amborella trichopoda HOM05D003939 ORTHO05D013368 2.7e-06 59.7 69 46.4
MBI06_g03947_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 2.7e-06 59.7 117 28.2
MBI19_g03794_MAGBIO Magnolia biondii HOM05D003939 ORTHO05D013368 3.6e-06 59.3 109 40.4
Hma1.2p1_0481F.1_g162030 Hydrangea macrophylla HOM05D003939 ORTHO05D005979 4.7e-06 58.9 168 25.6


User provided reference genes

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