Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G014500 Manihot esculenta HOM05D004763 ORTHO05D007492 0.0e+00 1327.0 675 100.0
CiPaw.14G125100 Carya illinoinensis HOM05D004763 ORTHO05D007492 0.0e+00 1196.0 674 89.3
Potri.003G211000 Populus trichocarpa HOM05D004763 ORTHO05D007492 0.0e+00 1184.1 669 89.5
Thecc.09G223100 Theobroma cacao HOM05D004763 ORTHO05D007492 0.0e+00 1181.8 668 88.8
Eucgr.B03662 Eucalyptus grandis HOM05D004763 ORTHO05D007492 0.0e+00 1178.7 673 87.8
Dinv36304 Davidia involucrata HOM05D004763 ORTHO05D007492 0.0e+00 1177.2 671 87.9
TWI34G0672 Tripterygium wilfordii HOM05D004763 ORTHO05D007492 0.0e+00 1175.2 671 87.5
GSVIVG01025336001 Vitis vinifera HOM05D004763 ORTHO05D007492 0.0e+00 1175.2 672 88.1
QL01p006243 Quercus lobata HOM05D004763 ORTHO05D007492 0.0e+00 1174.1 674 88.1
Gorai.013G250000 Gossypium raimondii HOM05D004763 ORTHO05D007492 0.0e+00 1173.3 665 88.4
Gohir.D13G219100 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1172.5 665 88.3
MELO3C014639.2 Cucumis melo HOM05D004763 ORTHO05D007492 0.0e+00 1171.0 673 87.5
Gohir.A13G215400 Gossypium hirsutum HOM05D004763 ORTHO05D007492 0.0e+00 1170.6 665 88.1
CsaV3_4G023800 Cucumis sativus L. HOM05D004763 ORTHO05D007492 0.0e+00 1167.5 673 87.5
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 0.0e+00 1166.8 675 87.0
Hund22081 Selenicereus undatus HOM05D004763 ORTHO05D007492 0.0e+00 1164.1 675 86.4
Nn7g36058 Nelumbo nucifera HOM05D004763 ORTHO05D007492 0.0e+00 1160.6 672 86.3
Glyma.13G342900 Glycine max HOM05D004763 ORTHO05D007492 0.0e+00 1157.9 672 86.0
arahy.Tifrunner.gnm1.ann1.P0K6XU Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1157.5 668 86.8
CSS0044360 Camellia sinensis var. sinensis HOM05D004763 ORTHO05D007492 0.0e+00 1157.5 668 86.4
TAR623G1126 Trochodendron aralioides HOM05D004763 ORTHO05D007492 0.0e+00 1155.2 667 86.5
arahy.Tifrunner.gnm1.ann1.VYK1P0 Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1154.0 668 86.4
Sc09g0000480 Simmondsia chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1154.0 676 85.7
arahy.Tifrunner.gnm1.ann1.GN3GFY Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1152.1 668 86.2
Hma1.2p1_1169F.1_g263300 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 0.0e+00 1152.1 668 85.9
Medtr2g098510 Medicago truncatula HOM05D004763 ORTHO05D007492 0.0e+00 1151.0 669 85.7
Sabra03G0153800 Salix brachista HOM05D004763 ORTHO05D007492 0.0e+00 1147.9 648 89.4
Sabra03G0156000 Salix brachista HOM05D004763 ORTHO05D007492 0.0e+00 1147.9 648 89.4
Phvul.005G150500 Phaseolus vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1146.0 671 85.8
Sed0013957 Sechium edule HOM05D004763 ORTHO05D007492 0.0e+00 1144.8 672 85.4
AUR62019250 Chenopodium quinoa HOM05D004763 ORTHO05D007492 0.0e+00 1142.1 671 85.4
Cc01_g04070 Coffea canephora HOM05D004763 ORTHO05D007492 0.0e+00 1142.1 671 84.6
CANSAT54G1729 Cannabis sativa HOM05D004763 ORTHO05D007492 0.0e+00 1140.6 677 86.0
Lalb_Chr14g0372291 Lupinus albus HOM05D004763 ORTHO05D007492 0.0e+00 1139.4 670 84.5
Cpa.g.sc84.111 Carica papaya HOM05D004763 ORTHO05D007492 0.0e+00 1138.3 699 82.7
HanXRQChr14g0451781 Helianthus annuus HOM05D004763 ORTHO05D007492 0.0e+00 1136.3 677 83.5
Psat5g288480 Pisum sativum HOM05D004763 ORTHO05D007492 0.0e+00 1131.7 671 83.9
arahy.Tifrunner.gnm1.ann1.X75IXN Arachis hypogaea HOM05D004763 ORTHO05D007492 0.0e+00 1130.2 706 81.3
COL.COLO4_09893 Corchorus olitorius HOM05D004763 ORTHO05D007492 0.0e+00 1128.6 664 85.2
Lj3g0020649 Lotus japonicus HOM05D004763 ORTHO05D007492 0.0e+00 1127.1 675 83.6
EL10Ac4g10318 Beta vulgaris HOM05D004763 ORTHO05D007492 0.0e+00 1126.3 661 85.3
THA.LOC104816912 Tarenaya hassleriana HOM05D004763 ORTHO05D007492 0.0e+00 1125.2 665 84.2
Duzib150G1218 Durio zibethinus HOM05D004763 ORTHO05D007492 0.0e+00 1124.0 688 83.7
ECA238G4453 Erigeron canadensis HOM05D004763 ORTHO05D007492 0.0e+00 1123.6 677 82.7
Aqoxy1G00185 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 0.0e+00 1123.2 669 83.9
PGR102G0325 Punica granatum HOM05D004763 ORTHO05D007492 0.0e+00 1122.5 675 84.6
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 0.0e+00 1122.5 660 84.8
Ciclev10014511m.g Citrus clementina HOM05D004763 ORTHO05D007492 0.0e+00 1120.5 663 84.9
Prupe.6G018600 Prunus persica HOM05D004763 ORTHO05D007492 0.0e+00 1116.7 687 82.4
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 0.0e+00 1116.7 644 86.8
Peaxi162Scf00773g00119 Petunia axillaris HOM05D004763 ORTHO05D007492 0.0e+00 1115.1 679 82.6
PSO339G3791 Papaver somniferum HOM05D004763 ORTHO05D007492 0.0e+00 1112.4 671 83.5
Sopen01g009200 Solanum pennellii HOM05D004763 ORTHO05D007492 0.0e+00 1105.9 668 82.2
MD03G1021100 Malus domestica HOM05D004763 ORTHO05D007492 0.0e+00 1104.7 669 82.8
Solyc01g014490.4 Solanum lycopersicum HOM05D004763 ORTHO05D007492 0.0e+00 1103.2 667 82.0
RcHm_v2.0_Chr5g0078101 Rosa chinensis HOM05D004763 ORTHO05D007492 0.0e+00 1098.6 660 82.9
Migut.D00558 Erythranthe guttata HOM05D004763 ORTHO05D007492 0.0e+00 1094.0 673 80.5
BcaC05g28282 Brassica carinata HOM05D004763 ORTHO05D007492 0.0e+00 1093.6 666 81.7
C05p43300 Brassica napus HOM05D004763 ORTHO05D007492 0.0e+00 1092.8 666 81.5
FvH4_3g43550 Fragaria vesca HOM05D004763 ORTHO05D007492 0.0e+00 1092.8 660 82.3
Nitab4.5_0006575g0020 Nicotiana tabacum HOM05D004763 ORTHO05D007492 0.0e+00 1092.8 688 81.4
AL3G34700 Arabidopsis lyrata HOM05D004763 ORTHO05D007492 0.0e+00 1091.3 662 82.3
Carub.0003s2074 Capsella rubella HOM05D004763 ORTHO05D007492 0.0e+00 1090.5 662 82.5
Sp3g18800 Schrenkiella parvula HOM05D004763 ORTHO05D007492 0.0e+00 1088.6 666 81.7
AT3G20780 Arabidopsis thaliana HOM05D004763 ORTHO05D007492 0.0e+00 1087.8 663 82.1
BcaB06g26148 Brassica carinata HOM05D004763 ORTHO05D007492 0.0e+00 1082.0 670 80.9
HPP92_020536 Vanilla planifolia HOM05D004763 ORTHO05D007492 0.0e+00 1081.2 665 80.8
Nitab4.5_0003069g0050 Nicotiana tabacum HOM05D004763 ORTHO05D007492 0.0e+00 1080.1 675 82.1
FAN16G3272 Fragaria x ananassa HOM05D004763 ORTHO05D007492 0.0e+00 1078.5 670 80.7
A05p28000 Brassica napus HOM05D004763 ORTHO05D007492 0.0e+00 1078.2 680 80.0
Thhalv10020214m.g Eutrema salsugineum HOM05D004763 ORTHO05D007492 4.6e-312 1074.7 666 81.1
BraA05t21683Z Brassica rapa HOM05D004763 ORTHO05D007492 2.3e-311 1071.6 688 79.1
SGA_v2.0_scaffold1G00797 Striga asiatica HOM05D004763 ORTHO05D007492 6.0e-310 1067.0 731 75.2
BolC5t33062H Brassica oleracea HOM05D004763 ORTHO05D007492 2.3e-309 1065.1 697 77.5
Rhsim01G0189300 Rhododendron simsii HOM05D004763 ORTHO05D007492 6.6e-309 1063.5 755 74.0
ATR0605G091 Amborella trichopoda HOM05D004763 ORTHO05D007492 8.1e-307 1056.6 667 79.6
Os09g0279600 Oryza sativa ssp. japonica HOM05D004763 ORTHO05D007492 1.4e-306 1055.8 648 79.8
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 2.1e-302 1042.0 643 80.9
Lsat_1_v5_gn_2_101121 Lactuca sativa HOM05D004763 ORTHO05D007492 8.1e-299 1030.0 695 76.0
Actinidia39377 Actinidia chinensis HOM05D004763 ORTHO05D007492 4.9e-296 1020.8 672 78.6
Aa31LG8G7590 Aethionema arabicum HOM05D004763 ORTHO05D007492 3.1e-290 1001.5 644 79.0
Ah.04g161760 Amaranthus hybridus HOM05D004763 ORTHO05D007492 1.2e-286 989.6 666 77.2
Atru.chr3.2503 Acer truncatum HOM05D004763 ORTHO05D007492 5.1e-285 984.2 582 84.0
Ca_01270_v3 Cicer arietinum L. HOM05D004763 ORTHO05D007492 2.2e-280 968.8 597 81.4
DCAR_024396 Daucus carota HOM05D004763 ORTHO05D007492 4.2e-279 964.5 674 74.2
Pp3c22_12720 Physcomitrium patens HOM05D004763 ORTHO05D007492 5.6e-276 954.1 667 72.4
AagrBONN_evm.TU.Sc2ySwM_344.3405 Anthoceros agrestis HOM05D004763 ORTHO05D007492 2.0e-273 945.7 646 72.0
CARHR096610 Cardamine hirsuta HOM05D004763 ORTHO05D007492 5.8e-273 944.1 591 80.2
Lj4g0010878 Lotus japonicus HOM05D004763 ORTHO05D007492 3.2e-271 938.3 675 73.5
Aqoxy381s001 Aquilegia oxysepala HOM05D004763 ORTHO05D007492 2.0e-265 919.1 655 73.7
SMO116G0144 Selaginella moellendorffii HOM05D004763 ORTHO05D007492 1.0e-264 916.8 652 70.7
Mapoly0042s0060 Marchantia polymorpha HOM05D004763 ORTHO05D007492 3.2e-263 911.8 667 69.1
CBR_g31022 Chara braunii HOM05D004763 ORTHO05D007492 3.3e-260 901.7 664 68.1
Hma1.2p1_1169F.1_g263310 Hydrangea macrophylla HOM05D004763 ORTHO05D007492 2.1e-259 899.0 509 86.2
FAN21G2003 Fragaria x ananassa HOM05D004763 ORTHO05D007492 2.4e-258 895.6 634 73.2
FAN11G2145 Fragaria x ananassa HOM05D004763 ORTHO05D007492 4.8e-251 871.3 697 66.7
FAN11G0713 Fragaria x ananassa HOM05D004763 ORTHO05D007492 1.9e-247 859.4 697 65.7
Potri.T085401 Populus trichocarpa HOM05D004763 ORTHO05D007492 2.9e-240 835.5 443 93.5
Zm00001eb308780 Zea mays HOM05D004763 ORTHO05D007492 6.1e-214 748.0 464 76.9
Cre01.g019750 Chlamydomonas reinhardtii HOM05D004763 ORTHO05D007492 4.9e-203 711.8 670 55.2
ClCG02G023620 Citrullus lanatus HOM05D004763 ORTHO05D007492 4.6e-185 652.1 375 89.3
SEGI_32015 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 8.1e-182 641.3 382 80.6
Lsat_1_v5_gn_1_127001 Lactuca sativa HOM05D004763 ORTHO05D007492 3.1e-181 639.4 550 61.6
MBI01_g15753_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D007492 9.2e-178 627.9 365 86.0
MCO09G243 Micromonas commoda HOM05D004763 ORTHO05D007492 3.9e-176 622.5 678 51.3
CAN.G646.1 Capsicum annuum HOM05D004763 ORTHO05D007492 9.6e-175 617.8 367 85.0
PRCOL_00005940 Prasinoderma coloniale HOM05D004763 ORTHO05D007492 6.2e-174 615.1 649 51.9
PGSC0003DMG401029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 7.6e-172 608.2 388 80.7
Lju1319A4T15 Lonicera japonica HOM05D004763 ORTHO05D007492 2.0e-148 530.4 306 85.6
Lj1A366T12 Lonicera japonica HOM05D004763 ORTHO05D007492 3.5e-145 519.6 367 74.4
Lsat_1_v5_gn_1_127121 Lactuca sativa HOM05D004763 ORTHO05D007492 6.3e-142 508.8 645 48.4
CAN.G442.1 Capsicum annuum HOM05D004763 ORTHO05D007492 1.7e-139 500.7 305 80.7
PGSC0003DMG402029907 Solanum tuberosum HOM05D004763 ORTHO05D007492 2.1e-137 493.8 304 79.9
Lj1C366G5 Lonicera japonica HOM05D004763 ORTHO05D007492 5.7e-119 432.6 298 74.8
Lsat_1_v5_gn_1_126981 Lactuca sativa HOM05D004763 ORTHO05D007492 2.0e-111 407.5 474 50.0
Actinidia06319 Actinidia chinensis HOM05D004763 ORTHO05D007492 2.0e-84 317.8 216 75.9
SEGI_39045 Sequoiadendron giganteum HOM05D004763 ORTHO05D007492 6.2e-81 306.2 214 72.4
Eucgr.B03660 Eucalyptus grandis HOM05D004763 ORTHO05D007492 1.1e-74 285.4 175 82.9
Lju1319C4G3 Lonicera japonica HOM05D004763 ORTHO05D014896 4.3e-58 230.3 234 58.5
TPR.G29742 Trifolium pratense HOM05D004763 ORTHO05D007492 1.2e-55 222.2 247 51.4
TPR.G29743 Trifolium pratense HOM05D004763 ORTHO05D007492 1.7e-54 218.4 218 57.8
Oeu036968.1 Olea europaea HOM05D004763 ORTHO05D007492 5.1e-51 206.8 104 91.3
Lsat_1_v5_gn_1_126941 Lactuca sativa HOM05D004763 ORTHO05D007492 1.6e-49 201.8 221 49.3
Lsat_1_v5_gn_1_127201 Lactuca sativa HOM05D004763 ORTHO05D007492 8.4e-38 162.9 416 32.0
Lsat_1_v5_gn_1_127161 Lactuca sativa HOM05D004763 ORTHO05D007492 2.1e-36 158.3 173 52.0
MBI09_g40619_MAGBIO Magnolia biondii HOM05D004763 ORTHO05D019264 8.7e-35 152.9 87 85.1
MBI04_g09599_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 1.1e-34 152.5 87 85.1
MBI02_g24793_MAGBIO Magnolia biondii HOM05D000103 ORTHO05D019264 9.6e-34 149.4 87 83.9
Aa31LG8G7550 Aethionema arabicum HOM05D004763 ORTHO05D007492 1.3e-33 149.1 466 33.0
Ca_01269_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 1.3e-33 149.1 86 89.5
Thecc.03G073800 Theobroma cacao HOM05D004763 ORTHO05D019264 6.9e-32 143.3 107 67.3
PGSC0003DMG400012096 Solanum tuberosum HOM05D004763 ORTHO05D014896 1.4e-29 135.6 86 79.1
PGSC0003DMG401017076 Solanum tuberosum HOM05D004763 ORTHO05D026177 1.1e-24 119.4 112 56.2
arahy.Tifrunner.gnm1.ann1.50I1V9 Arachis hypogaea HOM05D004763 ORTHO05D014896 4.6e-20 104.0 68 80.9
arahy.Tifrunner.gnm1.ann1.F7UR4V Arachis hypogaea HOM05D004763 ORTHO05D014896 4.6e-20 104.0 68 80.9
arahy.Tifrunner.gnm1.ann1.G1IAFF Arachis hypogaea HOM05D004763 ORTHO05D014896 6.1e-20 103.6 82 69.5
Lju1319A4T14 Lonicera japonica HOM05D004763 ORTHO05D019264 5.1e-19 100.5 54 88.9
Lsat_1_v5_gn_3_118680 Lactuca sativa HOM05D004763 ORTHO05D007492 1.5e-18 99.0 55 85.5
PGSC0003DMG400026817 Solanum tuberosum HOM05D004763 ORTHO05D026177 1.7e-17 95.5 82 67.1
Sopen04g015550 Solanum pennellii HOM05D000004 ORTHO05D000002 5.3e-16 90.5 96 57.3
arahy.Tifrunner.gnm1.ann1.65KXHR Arachis hypogaea HOM05D004763 ORTHO05D014896 7.7e-15 86.7 49 89.8
TWI60G1170 Tripterygium wilfordii HOM05D004763 ORTHO05D014896 1.7e-14 85.5 49 87.8
Lsat_1_v5_gn_1_125620 Lactuca sativa HOM05D004763 ORTHO05D007492 1.1e-13 82.8 197 33.0
arahy.Tifrunner.gnm1.ann1.YT3XVJ Arachis hypogaea HOM05D012186 ORTHO05D009594 3.2e-13 81.3 98 54.1
Solyc11g028310.3 Solanum lycopersicum HOM05D004763 ORTHO05D026177 7.2e-13 80.1 63 71.4
Lsat_1_v5_gn_1_126960 Lactuca sativa HOM05D004763 ORTHO05D012314 2.7e-12 78.2 68 52.9
Aa31LG8G7540 Aethionema arabicum HOM05D004763 ORTHO05D007492 8.8e-11 73.2 68 58.8
PGSC0003DMG400019106 Solanum tuberosum HOM05D004763 ORTHO05D007492 9.7e-10 69.7 37 86.5
Solyc12g036030.1 Solanum lycopersicum HOM05D004763 ORTHO05D026177 1.4e-08 65.9 105 42.9
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 1.4e-08 65.9 42 73.8
Solyc11g028340.3 Solanum lycopersicum HOM05D004763 ORTHO05D019264 1.5e-07 62.4 44 63.6
Lsat_1_v5_gn_8_146221 Lactuca sativa HOM05D004763 ORTHO05D014896 5.0e-06 57.4 33 84.8


User provided reference genes

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