Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.12G064500 Manihot esculenta HOM05D006371 ORTHO05D008309 0.0e+00 1910.6 953 100.0
Potri.014G170300 Populus trichocarpa HOM05D006371 ORTHO05D008309 0.0e+00 1409.0 948 74.9
Sabra14G0129800 Salix brachista HOM05D006371 ORTHO05D008309 0.0e+00 1389.0 948 74.1
Cfa014202 Carpinus fangiana HOM05D006371 ORTHO05D008309 0.0e+00 1313.9 950 70.7
CiPaw.03G283700 Carya illinoinensis HOM05D006371 ORTHO05D008309 0.0e+00 1303.5 947 69.1
Ciclev10014166m.g Citrus clementina HOM05D006371 ORTHO05D008309 0.0e+00 1287.7 948 70.6
TWI36G0955 Tripterygium wilfordii HOM05D006371 ORTHO05D008309 0.0e+00 1281.9 968 69.2
QL04p067039 Quercus lobata HOM05D006371 ORTHO05D008309 0.0e+00 1274.2 949 69.1
MD09G1130200 Malus domestica HOM05D006371 ORTHO05D008309 0.0e+00 1217.6 982 65.3
Gohir.A11G148000 Gossypium hirsutum HOM05D006371 ORTHO05D008309 0.0e+00 1201.8 947 67.6
Gorai.007G165100 Gossypium raimondii HOM05D006371 ORTHO05D008309 0.0e+00 1199.5 947 67.6
RcHm_v2.0_Chr2g0155641 Rosa chinensis HOM05D006371 ORTHO05D008309 0.0e+00 1198.7 984 64.9
Duzib133G1082 Durio zibethinus HOM05D006371 ORTHO05D008309 0.0e+00 1198.3 953 66.3
FvH4_6g40410 Fragaria vesca HOM05D006371 ORTHO05D008309 0.0e+00 1195.6 983 64.7
FAN14G0004 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 1193.3 983 64.6
FAN05G5438 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 1192.9 983 64.8
FAN02G4613 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 1191.0 983 64.8
Gohir.D11G154800 Gossypium hirsutum HOM05D006371 ORTHO05D008309 0.0e+00 1190.3 947 67.2
Prupe.3G194900 Prunus persica HOM05D006371 ORTHO05D008309 0.0e+00 1189.1 981 64.4
Duzib211G0069 Durio zibethinus HOM05D006371 ORTHO05D008309 0.0e+00 1187.6 953 66.0
FAN09G0519 Fragaria x ananassa HOM05D006371 ORTHO05D008309 0.0e+00 1181.8 975 64.4
Eucgr.A01367 Eucalyptus grandis HOM05D006371 ORTHO05D008309 0.0e+00 1176.4 953 65.3
MELO3C024185.2 Cucumis melo HOM05D006371 ORTHO05D008309 0.0e+00 1172.5 946 65.9
CANSAT64G2089 Cannabis sativa HOM05D006371 ORTHO05D008309 0.0e+00 1169.8 956 65.2
Nn1g07560 Nelumbo nucifera HOM05D006371 ORTHO05D008309 0.0e+00 1164.8 959 65.1
Glyma.14G190200 Glycine max HOM05D006371 ORTHO05D008309 0.0e+00 1154.0 956 63.3
Glyma.02G223400 Glycine max HOM05D006371 ORTHO05D008309 0.0e+00 1149.0 956 63.1
GSVIVG01030124001 Vitis vinifera HOM05D006371 ORTHO05D008309 0.0e+00 1147.5 949 63.6
PGR031G1410 Punica granatum HOM05D006371 ORTHO05D008309 0.0e+00 1147.1 951 64.6
CsaV3_2G010080 Cucumis sativus L. HOM05D006371 ORTHO05D008309 0.0e+00 1142.1 944 64.0
arahy.Tifrunner.gnm1.ann1.YIC3VW Arachis hypogaea HOM05D006371 ORTHO05D008309 0.0e+00 1140.9 942 63.2
arahy.Tifrunner.gnm1.ann1.BM1T67 Arachis hypogaea HOM05D006371 ORTHO05D008309 0.0e+00 1139.8 939 63.4
THA.LOC104808834 Tarenaya hassleriana HOM05D006371 ORTHO05D008309 0.0e+00 1138.3 958 63.4
Thecc.01G199300 Theobroma cacao HOM05D006371 ORTHO05D008309 0.0e+00 1135.9 950 64.1
TAR627G0565 Trochodendron aralioides HOM05D006371 ORTHO05D008309 0.0e+00 1135.6 855 68.8
Lalb_Chr04g0252451 Lupinus albus HOM05D006371 ORTHO05D008309 0.0e+00 1135.2 956 62.7
PSO541G0072 Papaver somniferum HOM05D006371 ORTHO05D008309 0.0e+00 1110.9 965 62.4
PSO675G4792 Papaver somniferum HOM05D006371 ORTHO05D008309 0.0e+00 1108.2 964 62.2
COL.COLO4_19652 Corchorus olitorius HOM05D006371 ORTHO05D008309 0.0e+00 1106.7 911 65.2
Sp3g23150 Schrenkiella parvula HOM05D006371 ORTHO05D008309 0.0e+00 1106.7 943 62.4
LjContig00155g0006571 Lotus japonicus HOM05D006371 ORTHO05D008309 0.0e+00 1105.5 951 61.4
AL3G41970 Arabidopsis lyrata HOM05D006371 ORTHO05D008309 0.0e+00 1101.7 942 62.5
Aa31sc575G10 Aethionema arabicum HOM05D006371 ORTHO05D008309 0.0e+00 1099.0 943 62.1
Carub.0003s2599 Capsella rubella HOM05D006371 ORTHO05D008309 0.0e+00 1096.3 950 61.9
Thhalv10002385m.g Eutrema salsugineum HOM05D006371 ORTHO05D008309 0.0e+00 1096.3 943 62.4
CARHR102110 Cardamine hirsuta HOM05D006371 ORTHO05D008309 0.0e+00 1094.0 942 62.2
BcaB06g26772 Brassica carinata HOM05D006371 ORTHO05D008309 0.0e+00 1093.6 941 61.6
Aqoxy3G02224 Aquilegia oxysepala HOM05D006371 ORTHO05D008309 0.0e+00 1081.2 956 61.7
Dinv40160 Davidia involucrata HOM05D006371 ORTHO05D008309 0.0e+00 1081.2 956 61.6
BcaC06g35860 Brassica carinata HOM05D006371 ORTHO05D008309 0.0e+00 1078.9 943 61.2
C07p10340 Brassica napus HOM05D006371 ORTHO05D008309 0.0e+00 1076.2 944 61.2
BolC7t41483H Brassica oleracea HOM05D006371 ORTHO05D008309 0.0e+00 1075.5 955 60.7
BraA07t28469Z Brassica rapa HOM05D006371 ORTHO05D008309 0.0e+00 1075.5 942 61.0
Dinv08538 Davidia involucrata HOM05D006371 ORTHO05D008309 5.9e-311 1070.8 850 67.1
CSS0032100 Camellia sinensis var. sinensis HOM05D006371 ORTHO05D008309 7.8e-311 1070.5 908 63.9
Ca_05557_v3 Cicer arietinum L. HOM05D006371 ORTHO05D008309 2.2e-310 1068.9 933 59.8
A07p06760 Brassica napus HOM05D006371 ORTHO05D008309 2.9e-310 1068.5 949 60.4
TPR.G13852 Trifolium pratense HOM05D006371 ORTHO05D008309 3.9e-307 1058.1 954 59.1
Actinidia02362 Actinidia chinensis HOM05D006371 ORTHO05D008309 1.4e-301 1039.6 985 57.7
Psat2g060760 Pisum sativum HOM05D006371 ORTHO05D008309 6.0e-300 1034.2 945 58.9
Medtr5g069430 Medicago truncatula HOM05D006371 ORTHO05D008309 2.4e-296 1022.3 961 57.1
ATR0751G221 Amborella trichopoda HOM05D006371 ORTHO05D008309 2.3e-291 1005.7 996 56.3
Sed0018275 Sechium edule HOM05D006371 ORTHO05D008309 1.3e-286 989.9 805 66.5
HPP92_003032 Vanilla planifolia HOM05D006371 ORTHO05D008309 2.9e-278 962.2 958 53.4
Cc07_g11500 Coffea canephora HOM05D006371 ORTHO05D008309 2.3e-275 952.6 978 56.2
Lj4C228G6 Lonicera japonica HOM05D006371 ORTHO05D008309 4.8e-273 944.9 1011 53.9
Os08g0323600 Oryza sativa ssp. japonica HOM05D006371 ORTHO05D008309 1.2e-268 930.2 1017 52.1
MBI15_g38530_MAGBIO Magnolia biondii HOM05D006371 ORTHO05D008309 9.7e-266 920.6 780 61.8
AT2G04270 Arabidopsis thaliana HOM05D006371 ORTHO05D008309 1.1e-264 917.1 714 68.6
Migut.D00896 Erythranthe guttata HOM05D006371 ORTHO05D008309 2.9e-262 909.1 947 56.4
EL10Ac6g13348 Beta vulgaris HOM05D006371 ORTHO05D008309 1.5e-261 906.7 988 52.7
Sc07g0001260 Simmondsia chinensis HOM05D006371 ORTHO05D008309 1.5e-261 906.7 961 53.7
MSTRG.10896 Avicennia marina HOM05D006371 ORTHO05D008309 6.1e-260 901.4 768 64.8
ECA232G0409 Erigeron canadensis HOM05D006371 ORTHO05D008309 1.5e-258 896.7 916 55.6
SalBow7G3887 Salvia bowleyana HOM05D006371 ORTHO05D008309 2.2e-257 892.9 827 60.7
Ah.02g129050 Amaranthus hybridus HOM05D006371 ORTHO05D008309 1.4e-256 890.2 757 64.5
AUR62039632 Chenopodium quinoa HOM05D006371 ORTHO05D008309 4.1e-256 888.6 963 54.4
HanXRQChr09g0256951 Helianthus annuus HOM05D006371 ORTHO05D008309 5.4e-256 888.3 911 55.5
Solyc02g083140.3 Solanum lycopersicum HOM05D006371 ORTHO05D008309 2.0e-255 886.3 991 52.5
PGSC0003DMG400001545 Solanum tuberosum HOM05D006371 ORTHO05D008309 2.2e-254 882.9 994 52.0
CAN.G890.8 Capsicum annuum HOM05D006371 ORTHO05D008309 5.2e-251 871.7 709 66.1
ClCG02G003000 Citrullus lanatus HOM05D006371 ORTHO05D008309 5.2e-251 871.7 782 61.6
Sopen02g027900 Solanum pennellii HOM05D006371 ORTHO05D008309 2.0e-250 869.8 943 53.8
Cpa.g.sc136.51 Carica papaya HOM05D006371 ORTHO05D008309 5.7e-250 868.2 596 74.8
Atru.chr6.3429 Acer truncatum HOM05D006371 ORTHO05D008309 1.4e-248 863.6 685 65.0
Peaxi162Scf00300g00515 Petunia axillaris HOM05D006371 ORTHO05D008309 2.4e-248 862.8 1013 51.8
Nitab4.5_0005413g0050 Nicotiana tabacum HOM05D006371 ORTHO05D008309 4.1e-248 862.1 948 53.8
AUR62040011 Chenopodium quinoa HOM05D006371 ORTHO05D008309 7.7e-247 857.8 913 54.2
Lsat_1_v5_gn_4_142580 Lactuca sativa HOM05D006371 ORTHO05D008309 1.2e-244 850.5 950 53.4
ECA238G3451 Erigeron canadensis HOM05D006371 ORTHO05D008309 4.4e-242 842.0 834 58.0
Phvul.008G190000 Phaseolus vulgaris HOM05D006371 ORTHO05D008309 2.3e-235 819.7 772 57.6
Haze_12588 Corylus avellana HOM05D006371 ORTHO05D008309 2.7e-231 806.2 646 64.1
Hund03659 Selenicereus undatus HOM05D006371 ORTHO05D008309 5.6e-229 798.5 1009 47.9
Oeu049652.2 Olea europaea HOM05D006371 ORTHO05D008309 1.8e-227 793.5 1039 47.9
Zm00001eb038720 Zea mays HOM05D006371 ORTHO05D008309 9.2e-224 781.2 805 55.7
CDE02G2282 Ceratophyllum demersum HOM05D006371 ORTHO05D008309 9.6e-213 744.6 752 54.0
Hund03661 Selenicereus undatus HOM05D006371 ORTHO05D008309 3.2e-208 729.6 1028 44.9
SGA_v2.0_scaffold68G22808 Striga asiatica HOM05D006371 ORTHO05D008309 4.6e-207 725.7 959 47.3
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 4.3e-205 719.2 712 57.7
Hma1.2p1_0315F.1_g122770 Hydrangea macrophylla HOM05D006371 ORTHO05D008309 3.4e-202 709.5 730 54.2
vmacro20507 Vaccinium macrocarpon HOM05D006371 ORTHO05D008309 1.6e-183 647.5 1056 40.7
Mapoly0111s0056 Marchantia polymorpha HOM05D006371 ORTHO05D008309 6.5e-177 625.5 940 41.8
DCAR_023137 Daucus carota HOM05D006371 ORTHO05D008309 1.8e-174 617.5 474 68.8
Nitab4.5_0023804g0010 Nicotiana tabacum HOM05D006371 ORTHO05D008309 7.4e-165 585.5 496 64.3
AagrBONN_evm.TU.Sc2ySwM_368.983 Anthoceros agrestis HOM05D006371 ORTHO05D008309 5.2e-158 562.8 926 39.2
Rhsim10G0203500 Rhododendron simsii HOM05D006371 ORTHO05D008309 1.4e-155 554.7 1095 36.9
Pp3c4_14910 Physcomitrium patens HOM05D006371 ORTHO05D008309 1.5e-149 534.6 711 43.5
SMO117G0275 Selaginella moellendorffii HOM05D006371 ORTHO05D008309 1.5e-125 454.9 571 45.7
Haze_12589 Corylus avellana HOM05D006371 ORTHO05D008309 1.9e-99 368.2 425 52.5
SEGI_21719 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 3.0e-65 254.6 208 63.5
AUR62026198 Chenopodium quinoa HOM05D006371 ORTHO05D008309 1.3e-63 249.2 246 55.3
Ca_28887_v3 Cicer arietinum L. HOM05D006371 ORTHO05D008309 2.7e-50 204.9 347 34.3
MD17G1105600 Malus domestica HOM05D006371 ORTHO05D008309 2.8e-47 194.9 197 60.4
MCO12G287 Micromonas commoda HOM05D006371 ORTHO05D008309 2.3e-41 175.3 334 34.4
SEGI_30134 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 1.7e-36 159.1 561 28.3
CBR_g28919 Chara braunii HOM05D006371 ORTHO05D000048 1.3e-23 116.3 123 50.4
SEGI_19700 Sequoiadendron giganteum HOM05D006371 ORTHO05D008309 9.5e-19 100.1 74 67.6
MD17G1105400 Malus domestica HOM05D006371 ORTHO05D008309 6.1e-18 97.4 87 62.1
CBR_g28922 Chara braunii HOM05D000019 ORTHO05D000048 2.6e-16 92.0 273 30.0
CBR_g28910 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-15 89.0 130 40.8
AUR62026199 Chenopodium quinoa HOM05D000691 ORTHO05D000378 7.0e-14 84.0 71 63.4
CSS0035540 Camellia sinensis var. sinensis HOM05D006371 ORTHO05D008309 1.7e-12 79.3 87 43.7
FAN09G2267 Fragaria x ananassa HOM05D006371 ORTHO05D008309 2.5e-11 75.5 62 48.4
MD17G1105500 Malus domestica HOM05D006371 ORTHO05D008309 1.8e-09 69.3 41 85.4
AUR62026201 Chenopodium quinoa HOM05D006371 ORTHO05D008309 3.4e-08 65.1 38 86.8
Sc07g0006540 Simmondsia chinensis HOM05D003809 ORTHO05D003935 2.2e-07 62.4 85 32.9
Hma1.2p1_0053F.1_g030840 Hydrangea macrophylla HOM05D001486 ORTHO05D017058 7.0e-06 57.4 45 60.0
Lalb_Chr03g0043131 Lupinus albus HOM05D003809 ORTHO05D003935 9.2e-06 57.0 79 31.6


User provided reference genes

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