Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.11G052190 Manihot esculenta HOM05D006136 ORTHO05D007244 0.0e+00 1179.5 596 100.0
Manes.02G224001 Manihot esculenta HOM05D006136 ORTHO05D007244 0.0e+00 1160.2 596 98.7
Cfa012873 Carpinus fangiana HOM05D006136 ORTHO05D007244 2.9e-127 459.9 645 44.5
GSVIVG01038350001 Vitis vinifera HOM05D006136 ORTHO05D007244 6.8e-124 448.7 621 44.0
CiPaw.07G237600 Carya illinoinensis HOM05D006136 ORTHO05D007244 1.1e-121 441.4 623 45.3
Potri.018G151300 Populus trichocarpa HOM05D006136 ORTHO05D007244 1.6e-120 437.6 590 46.4
QL05p072260 Quercus lobata HOM05D000321 ORTHO05D007244 7.3e-118 428.7 599 43.2
Dinv12632 Davidia involucrata HOM05D006136 ORTHO05D002774 4.0e-116 422.9 534 46.8
CSS0003139 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 3.4e-115 419.9 608 41.4
QL11p005727 Quercus lobata HOM05D006136 ORTHO05D007244 1.9e-113 414.1 771 36.8
Cpa.g.sc46.113 Carica papaya HOM05D006136 ORTHO05D007244 2.7e-112 410.2 756 37.7
TWI32G0914 Tripterygium wilfordii HOM05D006136 ORTHO05D007244 4.6e-112 409.5 672 40.3
Sabra18G0127000 Salix brachista HOM05D006136 ORTHO05D007244 1.7e-111 407.5 593 44.4
TAR626G0660 Trochodendron aralioides HOM05D006136 ORTHO05D007244 3.4e-107 393.3 612 40.7
Thecc.09G202200 Theobroma cacao HOM05D006136 ORTHO05D007244 7.3e-102 375.6 684 38.6
Ciclev10007497m.g Citrus clementina HOM05D006136 ORTHO05D007244 4.0e-100 369.8 789 36.0
Lj9A583T57 Lonicera japonica HOM05D006136 ORTHO05D007244 5.2e-100 369.4 710 38.0
Atru.chr7.1014 Acer truncatum HOM05D006136 ORTHO05D007244 7.6e-99 365.5 797 34.9
Glyma.09G084800 Glycine max HOM05D006136 ORTHO05D007244 1.4e-97 361.3 609 40.2
Prupe.1G000700 Prunus persica HOM05D006136 ORTHO05D007244 4.1e-97 359.8 633 39.2
Haze_21244 Corylus avellana HOM05D006136 ORTHO05D007244 4.6e-96 356.3 571 42.2
Gorai.004G023000 Gossypium raimondii HOM05D006136 ORTHO05D007244 3.0e-95 353.6 694 36.5
Gohir.D08G026500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 8.6e-95 352.1 694 36.2
arahy.Tifrunner.gnm1.ann1.46MDAV Arachis hypogaea HOM05D006136 ORTHO05D007244 3.3e-94 350.1 625 39.5
Lalb_Chr08g0233201 Lupinus albus HOM05D006136 ORTHO05D007244 3.3e-94 350.1 664 38.1
Gohir.A08G016500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 9.6e-94 348.6 696 36.5
Duzib170G0744 Durio zibethinus HOM05D006136 ORTHO05D007244 1.2e-93 348.2 696 37.2
COL.COLO4_09001 Corchorus olitorius HOM05D006136 ORTHO05D007244 1.1e-92 345.1 712 36.1
Glyma.15G193100 Glycine max HOM05D006136 ORTHO05D007244 3.1e-92 343.6 613 38.7
RcHm_v2.0_Chr4g0384741 Rosa chinensis HOM05D006136 ORTHO05D007244 3.8e-90 336.7 675 36.0
Oeu000955.1 Olea europaea HOM05D006136 ORTHO05D007244 1.6e-88 331.3 602 37.5
Lj6g0010551 Lotus japonicus HOM05D006136 ORTHO05D007244 7.8e-88 328.9 666 35.7
CSS0019621 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 1.7e-87 327.8 452 43.4
Eucgr.C02149 Eucalyptus grandis HOM05D006136 ORTHO05D007244 2.3e-87 327.4 680 35.9
Phvul.009G217200 Phaseolus vulgaris HOM05D006136 ORTHO05D007244 2.3e-87 327.4 629 36.9
FAN17G2087 Fragaria x ananassa HOM05D006136 ORTHO05D007244 6.6e-87 325.9 666 36.0
MSTRG.26507 Avicennia marina HOM05D006136 ORTHO05D007244 3.3e-86 323.6 627 34.3
MELO3C010014.2 Cucumis melo HOM05D006136 ORTHO05D007244 2.8e-85 320.5 671 35.5
Rhsim08G0117200 Rhododendron simsii HOM05D006136 ORTHO05D007244 6.9e-84 315.8 693 36.4
DCAR_020445 Daucus carota HOM05D006136 ORTHO05D002774 2.0e-83 314.3 705 32.5
EL10Ac2g03821 Beta vulgaris HOM05D006136 ORTHO05D007244 4.4e-83 313.2 657 35.3
vmacro17832 Vaccinium macrocarpon HOM05D006136 ORTHO05D007244 1.7e-82 311.2 657 36.5
SalBow5G5580 Salvia bowleyana HOM05D006136 ORTHO05D007244 4.9e-82 309.7 672 32.0
Psat1g019160 Pisum sativum HOM05D006136 ORTHO05D007244 1.4e-81 308.1 694 32.9
Cc06_g23510 Coffea canephora HOM05D006136 ORTHO05D007244 1.9e-81 307.8 584 38.7
VMungo1309G0146 Vigna mungo HOM05D006136 ORTHO05D007244 4.2e-81 306.6 634 36.1
MD04G1000700 Malus domestica HOM05D006136 ORTHO05D007244 5.4e-81 306.2 724 34.0
PGR044G0474 Punica granatum HOM05D006136 ORTHO05D007244 2.1e-80 304.3 652 35.1
CsaV3_1G044190 Cucumis sativus L. HOM05D006136 ORTHO05D007244 3.5e-80 303.5 694 34.3
ECA234G2139 Erigeron canadensis HOM05D006136 ORTHO05D007244 1.0e-79 302.0 701 32.4
FAN12G0507 Fragaria x ananassa HOM05D006136 ORTHO05D007244 8.7e-79 298.9 674 33.5
Sc06g0001020 Simmondsia chinensis HOM05D006136 ORTHO05D007244 1.1e-78 298.5 712 34.0
CANSAT01G2594 Cannabis sativa HOM05D006136 ORTHO05D007244 9.6e-78 295.4 657 34.6
ClCG03G011600 Citrullus lanatus HOM05D006136 ORTHO05D007244 9.6e-78 295.4 689 33.5
Aqoxy7G02564 Aquilegia oxysepala HOM05D006136 ORTHO05D007244 1.6e-77 294.7 801 30.8
Medtr2g048340 Medicago truncatula HOM05D006136 ORTHO05D007244 2.1e-77 294.3 678 32.7
Ca_02520_v3 Cicer arietinum L. HOM05D006136 ORTHO05D007244 8.1e-77 292.4 566 35.7
Lsat_1_v5_gn_5_82020 Lactuca sativa HOM05D006136 ORTHO05D007244 1.1e-76 292.0 588 35.4
Peaxi162Scf00474g00018 Petunia axillaris HOM05D006136 ORTHO05D007244 2.4e-76 290.8 677 33.8
HanXRQChr10g0309281 Helianthus annuus HOM05D006136 ORTHO05D007244 6.9e-76 289.3 676 31.8
PGSC0003DMG400013541 Solanum tuberosum HOM05D006136 ORTHO05D007244 4.5e-75 286.6 723 31.5
MBI16_g40727_MAGBIO Magnolia biondii HOM05D006136 ORTHO05D007244 6.4e-74 282.7 633 35.2
CARHR271930 Cardamine hirsuta HOM05D006136 ORTHO05D007244 3.2e-73 280.4 748 31.7
Sp6g19810 Schrenkiella parvula HOM05D006136 ORTHO05D007244 3.2e-73 280.4 677 34.7
Nitab4.5_0000807g0150 Nicotiana tabacum HOM05D006136 ORTHO05D007244 7.1e-73 279.3 750 31.5
AUR62009114 Chenopodium quinoa HOM05D000163 ORTHO05D007244 1.2e-72 278.5 726 31.3
Migut.L01610 Erythranthe guttata HOM05D006136 ORTHO05D007244 6.0e-72 276.2 689 31.2
AUR62039148 Chenopodium quinoa HOM05D006136 ORTHO05D007244 5.1e-71 273.1 724 31.5
Thhalv10012942m.g Eutrema salsugineum HOM05D006136 ORTHO05D007244 1.1e-70 271.9 673 34.9
FAN12G3399 Fragaria x ananassa HOM05D006136 ORTHO05D007244 5.6e-70 269.6 453 38.2
PSO478G4925 Papaver somniferum HOM05D006136 ORTHO05D007244 7.4e-70 269.2 721 30.5
Nn5g26953 Nelumbo nucifera HOM05D006136 ORTHO05D007244 4.0e-68 263.5 501 37.5
FAN22G1396 Fragaria x ananassa HOM05D006136 ORTHO05D007244 5.3e-68 263.1 600 34.3
Actinidia33603 Actinidia chinensis HOM05D006136 ORTHO05D007244 1.2e-67 261.9 327 46.8
AL8G34230 Arabidopsis lyrata HOM05D006136 ORTHO05D007244 2.6e-67 260.8 776 30.5
Nitab4.5_0000170g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 1.9e-65 254.6 757 29.7
PSO782G1690 Papaver somniferum HOM05D006136 ORTHO05D007244 7.1e-65 252.7 439 37.6
THA.LOC104803376 Tarenaya hassleriana HOM05D006136 ORTHO05D007244 1.0e-63 248.8 737 31.5
Sopen07g022390 Solanum pennellii HOM05D006136 ORTHO05D007244 3.9e-63 246.9 514 35.2
AT5G58130 Arabidopsis thaliana HOM05D006136 ORTHO05D007244 4.3e-62 243.4 424 40.8
C09p50030 Brassica napus HOM05D006136 ORTHO05D007244 7.4e-62 242.7 729 30.2
Carub.0008s1868 Capsella rubella HOM05D006136 ORTHO05D007244 9.6e-62 242.3 448 38.8
A10p16060 Brassica napus HOM05D006136 ORTHO05D007244 2.1e-61 241.1 381 41.5
BolC9t57856H Brassica oleracea HOM05D006136 ORTHO05D007244 2.8e-61 240.7 716 30.0
Os02g0138200 Oryza sativa ssp. japonica HOM05D006136 ORTHO05D007244 2.8e-61 240.7 606 32.7
SGA_v2.0_scaffold21G09584 Striga asiatica HOM05D006136 ORTHO05D007244 1.1e-60 238.8 632 31.8
BcaB08g36165 Brassica carinata HOM05D006136 ORTHO05D007244 1.4e-60 238.4 406 39.9
Aa31LG3G13960 Aethionema arabicum HOM05D006136 ORTHO05D007244 4.1e-60 236.9 428 40.0
BcaC04g19905 Brassica carinata HOM05D006136 ORTHO05D007244 5.3e-60 236.5 724 29.6
BraA10t43623Z Brassica rapa HOM05D006136 ORTHO05D007244 1.5e-59 235.0 381 40.7
ATR0626G098 Amborella trichopoda HOM05D006136 ORTHO05D007244 1.0e-58 232.3 609 30.7
Zm00001eb209220 Zea mays HOM05D006136 ORTHO05D007244 1.0e-58 232.3 606 32.3
RcHm_v2.0_Chr5g0003141 Rosa chinensis HOM05D006136 ORTHO05D007244 6.5e-58 229.6 598 33.1
HPP92_017041 Vanilla planifolia HOM05D006136 ORTHO05D007244 2.3e-55 221.1 457 33.7
TPR.G18712 Trifolium pratense HOM05D006136 ORTHO05D007244 8.7e-55 219.2 620 29.8
unitig_699.g19255 Utricularia gibba HOM05D006136 ORTHO05D007244 1.9e-54 218.0 423 35.7
PGR044G0304 Punica granatum HOM05D006136 ORTHO05D007244 7.2e-49 199.5 593 31.9
GSVIVG01038333001 Vitis vinifera HOM05D006136 ORTHO05D007244 1.8e-47 194.9 189 54.0
SEGI_05126 Sequoiadendron giganteum HOM05D006136 ORTHO05D007244 2.3e-47 194.5 231 46.8
Solyc07g042740.3 Solanum lycopersicum HOM05D006136 ORTHO05D007244 4.8e-37 160.2 196 44.4
CDE05G3219 Ceratophyllum demersum HOM05D006136 ORTHO05D007244 1.4e-36 158.7 232 40.9
Lj1g0026291 Lotus japonicus HOM05D006136 ORTHO05D007244 2.4e-36 157.9 321 36.1
arahy.Tifrunner.gnm1.ann1.27MYTD Arachis hypogaea HOM05D006136 ORTHO05D007244 1.8e-31 141.7 140 53.6
arahy.Tifrunner.gnm1.ann1.QC7K1D Arachis hypogaea HOM05D006136 ORTHO05D007244 1.1e-28 132.5 95 67.4
arahy.Tifrunner.gnm1.ann1.Q88MA9 Arachis hypogaea HOM05D006136 ORTHO05D007244 3.5e-27 127.5 93 64.5
Mapoly0169s0023 Marchantia polymorpha HOM05D006136 ORTHO05D007244 1.0e-26 125.9 197 38.1
FvH4_4g00130 Fragaria vesca HOM05D006136 ORTHO05D007244 9.4e-25 119.4 464 28.7
Sed0020259 Sechium edule HOM05D006136 ORTHO05D007244 8.0e-24 116.3 468 26.3
AagrBONN_evm.TU.Sc2ySwM_228.2439 Anthoceros agrestis HOM05D006136 ORTHO05D007244 4.0e-23 114.0 342 29.8
arahy.Tifrunner.gnm1.ann1.SWI1TY Arachis hypogaea HOM05D006136 ORTHO05D007244 4.0e-23 114.0 269 32.3
Hund03317 Selenicereus undatus HOM05D006136 ORTHO05D007244 5.7e-22 110.2 484 26.4
SMO367G1245 Selaginella moellendorffii HOM05D006136 ORTHO05D007244 2.2e-21 108.2 659 25.5
Pp3c1_8430 Physcomitrium patens HOM05D006136 ORTHO05D007244 1.1e-17 95.9 98 49.0
Glyma.07G231200 Glycine max HOM05D003235 ORTHO05D007244 1.4e-15 89.0 76 53.9
Solyc07g042700.4 Solanum lycopersicum HOM05D006136 ORTHO05D007244 2.0e-14 85.1 157 36.3
Nitab4.5_0002310g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 5.7e-14 83.6 193 32.1
Hma1.2p1_2895F.1_g329976 Hydrangea macrophylla HOM05D006136 ORTHO05D007244 1.1e-12 79.3 59 67.8
CBR_g39420 Chara braunii HOM05D006136 ORTHO05D007244 3.1e-12 77.8 145 35.2
Lsat_1_v5_gn_5_81880 Lactuca sativa HOM05D006136 ORTHO05D007244 4.5e-11 73.9 177 28.2
TPR.G20669 Trifolium pratense HOM05D006136 ORTHO05D007244 2.5e-09 68.2 78 47.4
BcaC03g14120 Brassica carinata HOM05D009052 ORTHO05D011796 2.1e-08 65.1 120 38.3
C02p13590 Brassica napus HOM05D006136 ORTHO05D007244 2.3e-07 61.6 76 48.7
BolC2t07471H Brassica oleracea HOM05D006136 ORTHO05D007244 2.3e-07 61.6 76 48.7
MBI16_g40728_MAGBIO Magnolia biondii HOM05D006136 ORTHO05D007244 3.0e-07 61.2 74 47.3
VMungo1309G2339 Vigna mungo HOM05D006136 ORTHO05D007244 8.9e-07 59.7 157 30.6
TPR.G24042 Trifolium pratense HOM05D006136 ORTHO05D007244 2.6e-06 58.2 44 63.6


User provided reference genes

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