Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.08G085100 Manihot esculenta HOM05D003522 ORTHO05D003993 1.9e-10 67.8 34 100.0
Atru.chr12.835 Acer truncatum HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Atru.chr7.568 Acer truncatum HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
AL3G53200 Arabidopsis lyrata HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
AT2G18740 Arabidopsis thaliana HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
AT4G30330 Arabidopsis thaliana HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
MSTRG.19883 Avicennia marina HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
MSTRG.26107 Avicennia marina HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
MSTRG.6452 Avicennia marina HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
EL10Ac6g15226 Beta vulgaris HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
BcaB03g16666 Brassica carinata HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
BcaB08g34822 Brassica carinata HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
BcaC04g22886 Brassica carinata HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
BcaC06g36458 Brassica carinata HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
A06p33110 Brassica napus HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
C03p59350 Brassica napus HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
BolC3t18199H Brassica oleracea HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
BolC7t40790H Brassica oleracea HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
BraA06t26241Z Brassica rapa HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
BraA07t27987Z Brassica rapa HOM05D003414 ORTHO05D003913 5.4e-10 66.2 33 97.0
CSS0040204 Camellia sinensis var. sinensis HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
CANSAT11G1348 Cannabis sativa HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Carub.0003s3301 Capsella rubella HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Carub.0007s1027 Capsella rubella HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Cpa.g.sc126.37 Carica papaya HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
CiPaw.07G188400 Carya illinoinensis HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
CiPaw.08G038400 Carya illinoinensis HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
CDE01G0803 Ceratophyllum demersum HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
CDE12G0561 Ceratophyllum demersum HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Ciclev10010045m.g Citrus clementina HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Cc04_g00460 Coffea canephora HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
COL.COLO4_22865 Corchorus olitorius HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
MELO3C017504.2 Cucumis melo HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
CsaV3_1G031190 Cucumis sativus L. HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Dinv37803 Davidia involucrata HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Dinv42765 Davidia involucrata HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Dinv43338 Davidia involucrata HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Duzib150G0286 Durio zibethinus HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Duzib168G1637 Durio zibethinus HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Migut.D00898 Erythranthe guttata HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Migut.J01787 Erythranthe guttata HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Thhalv10022941m.g Eutrema salsugineum HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Thhalv10026682m.g Eutrema salsugineum HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
FvH4_7g02280 Fragaria vesca HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
FAN01G2196 Fragaria x ananassa HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
FAN06G0337 Fragaria x ananassa HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
FAN10G2139 Fragaria x ananassa HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
FAN17G0034 Fragaria x ananassa HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
FAN22G0545 Fragaria x ananassa HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Gohir.A08G234900 Gossypium hirsutum HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Gohir.D08G255300 Gossypium hirsutum HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Gorai.004G272400 Gossypium raimondii HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Hma1.2p1_1104F.1_g257440 Hydrangea macrophylla HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Manes.05G188200 Manihot esculenta HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Manes.06G037450 Manihot esculenta HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Nitab4.5_0000033g0430 Nicotiana tabacum HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Nitab4.5_0000782g0190 Nicotiana tabacum HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Oeu004017.1 Olea europaea HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Os02g0126700 Oryza sativa ssp. japonica HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Peaxi162Scf00171g00327 Petunia axillaris HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Peaxi162Scf00643g00641 Petunia axillaris HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Potri.006G174000 Populus trichocarpa HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Potri.018G096200 Populus trichocarpa HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Prupe.1G094500 Prunus persica HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Prupe.4G278600 Prunus persica HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
QL02p096594 Quercus lobata HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
QL08p040368 Quercus lobata HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
RcHm_v2.0_Chr1g0319581 Rosa chinensis HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
RcHm_v2.0_Chr4g0403921 Rosa chinensis HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Sabra06G0133600 Salix brachista HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Sp3g32240 Schrenkiella parvula HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Sp7g28200 Schrenkiella parvula HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Sed0017254 Sechium edule HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Sed0019676 Sechium edule HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Sc03g0004630 Simmondsia chinensis HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Solyc03g098470.3 Solanum lycopersicum HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Solyc06g072280.3 Solanum lycopersicum HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Sopen03g029210 Solanum pennellii HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Sopen06g028650 Solanum pennellii HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
PGSC0003DMG400010156 Solanum tuberosum HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
PGSC0003DMG400025548 Solanum tuberosum HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
PGSC0003DMG400027050 Solanum tuberosum HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
THA.LOC104803508 Tarenaya hassleriana HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Thecc.06G016400 Theobroma cacao HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Thecc.09G164300 Theobroma cacao HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
TWI15G0209 Tripterygium wilfordii HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
TWI60G1574 Tripterygium wilfordii HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
TWI63G0474 Tripterygium wilfordii HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
unitig_92.g28119 Utricularia gibba HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
Zm00001eb338420 Zea mays HOM05D003522 ORTHO05D003993 5.4e-10 66.2 33 97.0
arahy.Tifrunner.gnm1.ann1.341EN6 Arachis hypogaea HOM05D003522 ORTHO05D003993 7.1e-10 65.9 33 93.9
arahy.Tifrunner.gnm1.ann1.QJ4IDW Arachis hypogaea HOM05D003522 ORTHO05D003993 7.1e-10 65.9 33 93.9
Ca_06194_v3 Cicer arietinum L. HOM05D003522 ORTHO05D003993 7.1e-10 65.9 33 93.9
Glyma.04G208600 Glycine max HOM05D003522 ORTHO05D003993 7.1e-10 65.9 33 93.9
Glyma.06G157100 Glycine max HOM05D003522 ORTHO05D003993 7.1e-10 65.9 33 93.9
Glyma.13G093400 Glycine max HOM05D003522 ORTHO05D003993 7.1e-10 65.9 33 93.9
Glyma.17G067100 Glycine max HOM05D003522 ORTHO05D003993 7.1e-10 65.9 33 93.9
Lj4g0002134 Lotus japonicus HOM05D003522 ORTHO05D003993 7.1e-10 65.9 33 93.9
Lj5g0004975 Lotus japonicus HOM05D003522 ORTHO05D003993 7.1e-10 65.9 33 93.9
Lalb_Chr07g0180191 Lupinus albus HOM05D003522 ORTHO05D003993 7.1e-10 65.9 33 93.9
Lalb_Chr12g0199151 Lupinus albus HOM05D003522 ORTHO05D003993 7.1e-10 65.9 33 93.9
Lalb_Chr13g0300421 Lupinus albus HOM05D003522 ORTHO05D003993 7.1e-10 65.9 33 93.9
Medtr2g104440 Medicago truncatula HOM05D003522 ORTHO05D003993 7.1e-10 65.9 33 93.9
Medtr5g072530 Medicago truncatula HOM05D003522 ORTHO05D003993 7.1e-10 65.9 33 93.9
Phvul.003G149400 Phaseolus vulgaris HOM05D003522 ORTHO05D003993 7.1e-10 65.9 33 93.9
Phvul.009G153200 Phaseolus vulgaris HOM05D003522 ORTHO05D003993 7.1e-10 65.9 33 93.9
Psat6g004960 Pisum sativum HOM05D003522 ORTHO05D003993 7.1e-10 65.9 33 93.9
Actinidia21860 Actinidia chinensis HOM05D003522 ORTHO05D003993 1.2e-09 65.1 33 93.9
Aa31LG8G15860 Aethionema arabicum HOM05D003522 ORTHO05D003993 1.2e-09 65.1 33 93.9
CSS0025026 Camellia sinensis var. sinensis HOM05D003522 ORTHO05D003993 1.2e-09 65.1 33 93.9
SalBow6G5940 Salvia bowleyana HOM05D000567 ORTHO05D003993 1.2e-09 65.1 33 93.9
THA.LOC104803931 Tarenaya hassleriana HOM05D003522 ORTHO05D003993 1.2e-09 65.1 33 93.9
unitig_37.g12145 Utricularia gibba HOM05D003522 ORTHO05D003993 1.2e-09 65.1 33 93.9
HPP92_018528 Vanilla planifolia HOM05D003522 ORTHO05D003993 1.2e-09 65.1 33 93.9
GSVIVG01008301001 Vitis vinifera HOM05D003522 ORTHO05D003993 1.2e-09 65.1 33 93.9
CAN.G929.30 Capsicum annuum HOM05D003522 ORTHO05D003993 1.6e-09 64.7 33 93.9
Eucgr.L02749 Eucalyptus grandis HOM05D003522 ORTHO05D003993 1.6e-09 64.7 33 93.9
Hma1.2p1_1261F.1_g271100 Hydrangea macrophylla HOM05D003522 ORTHO05D003993 1.6e-09 64.7 33 93.9
MD13G1262900 Malus domestica HOM05D003522 ORTHO05D003993 2.1e-09 64.3 33 93.9
ATR0580G403 Amborella trichopoda HOM05D003522 ORTHO05D003993 2.7e-09 63.9 33 90.9
ATR0763G200 Amborella trichopoda HOM05D003522 ORTHO05D003993 2.7e-09 63.9 33 90.9
CARHR109330 Cardamine hirsuta HOM05D003522 ORTHO05D003993 2.7e-09 63.9 33 90.9
MBI14_g26429_MAGBIO Magnolia biondii HOM05D003522 ORTHO05D003993 2.7e-09 63.9 33 90.9
Mapoly0127s0039 Marchantia polymorpha HOM05D003522 ORTHO05D003993 2.7e-09 63.9 33 90.9
Nitab4.5_0001678g0020 Nicotiana tabacum HOM05D003522 ORTHO05D003993 2.7e-09 63.9 33 93.9
Nitab4.5_0005074g0050 Nicotiana tabacum HOM05D003522 ORTHO05D003993 2.7e-09 63.9 33 90.9
PSO063G7604 Papaver somniferum HOM05D003522 ORTHO05D003993 2.7e-09 63.9 33 90.9
PSO170G2534 Papaver somniferum HOM05D003522 ORTHO05D003993 2.7e-09 63.9 33 90.9
PSO782G1667 Papaver somniferum HOM05D003522 ORTHO05D003993 2.7e-09 63.9 33 90.9
PSO782G3457 Papaver somniferum HOM05D003522 ORTHO05D003993 2.7e-09 63.9 33 90.9
Psat6g015920 Pisum sativum HOM05D003522 ORTHO05D003993 2.7e-09 63.9 32 93.8
PGR044G2568 Punica granatum HOM05D003522 ORTHO05D003993 2.7e-09 63.9 33 90.9
TAR383G1055 Trochodendron aralioides HOM05D003522 ORTHO05D003993 2.7e-09 63.9 33 90.9
TAR626G0766 Trochodendron aralioides HOM05D003522 ORTHO05D003993 2.7e-09 63.9 33 90.9
TAR636G2407 Trochodendron aralioides HOM05D003522 ORTHO05D003993 2.7e-09 63.9 33 90.9
AagrBONN_evm.TU.Sc2ySwM_228.3104 Anthoceros agrestis HOM05D003522 ORTHO05D003993 3.5e-09 63.5 33 90.9
Sabra18G0083100 Salix brachista HOM05D003522 ORTHO05D003993 4.6e-09 63.2 33 90.9
Zm00001eb410720 Zea mays HOM05D003522 ORTHO05D003993 4.6e-09 63.2 33 93.9
Nn2g14329 Nelumbo nucifera HOM05D003522 ORTHO05D003993 6.0e-09 62.8 33 87.9
Psat6g014800 Pisum sativum HOM05D003522 ORTHO05D003993 6.0e-09 62.8 32 90.6
HanXRQChr10g0311551 Helianthus annuus HOM05D003522 ORTHO05D003993 1.3e-08 61.6 31 93.5
Lsat_1_v5_gn_5_137520 Lactuca sativa HOM05D003522 ORTHO05D003993 1.3e-08 61.6 31 93.5
SMO347G0208 Selaginella moellendorffii HOM05D003522 ORTHO05D003993 2.3e-08 60.8 33 84.8
Pp3c14_15210 Physcomitrium patens HOM05D003522 ORTHO05D003993 3.0e-08 60.5 31 90.3
Pp3c17_6070 Physcomitrium patens HOM05D003522 ORTHO05D003993 3.0e-08 60.5 31 90.3
Pp3c2_10270 Physcomitrium patens HOM05D003522 ORTHO05D003993 3.0e-08 60.5 31 90.3
ECA234G0975 Erigeron canadensis HOM05D003522 ORTHO05D003993 5.1e-08 59.7 31 90.3
MCO12G107 Micromonas commoda HOM05D003522 ORTHO05D003993 6.6e-08 59.3 31 87.1
PRCOL_00004725 Prasinoderma coloniale HOM05D003522 ORTHO05D003993 8.6e-08 58.9 33 78.8
Prupe.1G136300 Prunus persica HOM05D003522 ORTHO05D003993 7.3e-07 55.8 33 81.8
Psat6g005000 Pisum sativum HOM05D003522 ORTHO05D003993 9.5e-07 55.5 29 86.2
Cre08.g385200 Chlamydomonas reinhardtii HOM05D003522 ORTHO05D003993 1.6e-06 54.7 31 74.2


User provided reference genes

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