Gene: AT2G18740
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT2G18740
- Transcript Identifier AT2G18740.1
- Gene Type Coding gene
- Location Chr2 : 8123334-8124710 : positive
Gene Family Information
- ID HOM05D003522
- #Genes/#Species 194/92
- Phylogenetic origin
- ID ORTHO05D003993
- #Genes/#Species 195/93
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT2G18740.1
- uniprot Q9ZV45
Descriptions
- Description Small nuclear ribonucleoprotein family protein
- Computational description Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT4G30330.1); Has 728 Blast hits to 728 proteins in 213 species: Archae - 91; Bacteria - 0; Metazoa - 243; Fungi - 159; Plants - 127; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000398 | IEA | GOA Database | mRNA splicing, via spliceosome | |
| GO:0000398 | IEA | InterPro | mRNA splicing, via spliceosome | |
| GO:0008380 | IEA | GOA Database | RNA splicing | |
| GO:0008380 | IMP | Gene Ontology | RNA splicing | 1 |
| GO:0006397 | IEA | GOA Database | mRNA processing | |
| GO:0000387 | IEA | GOA Database | spliceosomal snRNP assembly | |
| GO:0000387 | IBA | Gene Ontology | spliceosomal snRNP assembly | 2 |
| GO:0048509 | IMP | Gene Ontology | regulation of meristem development | 3 |
| GO:0043484 | IMP | Gene Ontology | regulation of RNA splicing | 3 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003723 | IEA | GOA Database | RNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005687 | IEA | GOA Database | U4 snRNP | |
| GO:0005687 | IBA | Gene Ontology | U4 snRNP | 2 |
| GO:0005681 | IEA | GOA Database | spliceosomal complex | |
| GO:0005681 | IEA | InterPro | spliceosomal complex | |
| GO:0005829 | IDA | GOA Database | cytosol | |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA ISM | Gene Ontology | nucleus | 1 |
| GO:0005682 | IEA | GOA Database | U5 snRNP | |
| GO:0005682 | IBA | Gene Ontology | U5 snRNP | 2 |
| GO:0005685 | IEA | GOA Database | U1 snRNP | |
| GO:0005685 | IBA | Gene Ontology | U1 snRNP | 2 |
| GO:0005686 | IEA | GOA Database | U2 snRNP | |
| GO:0005686 | IBA | Gene Ontology | U2 snRNP | 2 |
| GO:0046540 | IEA | GOA Database | U4/U6 x U5 tri-snRNP complex | |
| GO:0046540 | IBA | Gene Ontology | U4/U6 x U5 tri-snRNP complex | 2 |
| GO:0071011 | IBA | Gene Ontology | precatalytic spliceosome | 2 |
| GO:0005737 | IDA | Gene Ontology | cytoplasm | 1 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 16.2.2.5 | RNA processing.pre-mRNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.component Sm-E |