Gene: AT4G30330
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G30330
- Transcript Identifier AT4G30330.1
- Gene Type Coding gene
- Location Chr4 : 14836773-14837919 : negative
Gene Family Information
- ID HOM05D003522
- #Genes/#Species 194/92
- Phylogenetic origin
- ID ORTHO05D003993
- #Genes/#Species 195/93
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT4G30330.1
- uniprot Q8LAK5
Descriptions
- Description Small nuclear ribonucleoprotein family protein
- Computational description Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT2G18740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000398 | IEA | GOA Database | mRNA splicing, via spliceosome | |
| GO:0000398 | IEA | InterPro | mRNA splicing, via spliceosome | |
| GO:0008380 | IEA | GOA Database | RNA splicing | |
| GO:0006397 | IEA | GOA Database | mRNA processing | |
| GO:0000387 | IEA | GOA Database | spliceosomal snRNP assembly | |
| GO:0000387 | IBA | Gene Ontology | spliceosomal snRNP assembly | 1 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003723 | IEA | GOA Database | RNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005686 | IEA | GOA Database | U2 snRNP | |
| GO:0005686 | IBA | Gene Ontology | U2 snRNP | 1 |
| GO:0005681 | IEA | GOA Database | spliceosomal complex | |
| GO:0005681 | IEA | InterPro | spliceosomal complex | |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0005682 | IEA | GOA Database | U5 snRNP | |
| GO:0005682 | IBA | Gene Ontology | U5 snRNP | 1 |
| GO:0005685 | IEA | GOA Database | U1 snRNP | |
| GO:0005685 | IBA | Gene Ontology | U1 snRNP | 1 |
| GO:0005687 | IEA | GOA Database | U4 snRNP | |
| GO:0005687 | IBA | Gene Ontology | U4 snRNP | 1 |
| GO:0046540 | IEA | GOA Database | U4/U6 x U5 tri-snRNP complex | |
| GO:0046540 | IBA | Gene Ontology | U4/U6 x U5 tri-snRNP complex | 1 |
| GO:0071011 | IBA | Gene Ontology | precatalytic spliceosome | 1 |
| GO:0005829 | RCA | Gene Ontology | cytosol | 2 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 16.2.2.5 | RNA processing.pre-mRNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.component Sm-E |