Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.03G202800 Manihot esculenta HOM05D004365 ORTHO05D005123 4.0e-65 251.1 114 100.0
MSTRG.21775 Avicennia marina HOM05D004365 ORTHO05D005123 3.0e-52 208.4 115 80.0
PGR004G2507 Punica granatum HOM05D004365 ORTHO05D005123 3.0e-52 208.4 115 80.9
HanXRQChr05g0145921 Helianthus annuus HOM05D004365 ORTHO05D005123 3.9e-52 208.0 115 79.1
Nn4g25611 Nelumbo nucifera HOM05D004365 ORTHO05D005123 3.9e-52 208.0 115 80.0
unitig_22.g6354 Utricularia gibba HOM05D004365 ORTHO05D005123 3.9e-52 208.0 115 80.0
QL06p011635 Quercus lobata HOM05D004365 ORTHO05D005123 5.0e-52 207.6 114 79.8
ECA246G3323 Erigeron canadensis HOM05D004365 ORTHO05D005123 6.6e-52 207.2 115 79.1
Actinidia13364 Actinidia chinensis HOM05D004365 ORTHO05D005123 8.6e-52 206.8 115 79.1
CSS0008168 Camellia sinensis var. sinensis HOM05D004365 ORTHO05D005123 1.5e-51 206.1 115 78.3
Oeu016485.1 Olea europaea HOM05D004365 ORTHO05D005123 1.5e-51 206.1 115 78.3
TWI73G0828 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.5e-51 206.1 115 79.1
TAR365G0998 Trochodendron aralioides HOM05D004365 ORTHO05D005123 1.9e-51 205.7 115 79.1
Ah.13g072000 Amaranthus hybridus HOM05D004365 ORTHO05D005123 2.5e-51 205.3 115 78.3
Lsat_1_v5_gn_6_116841 Lactuca sativa HOM05D004365 ORTHO05D005123 2.5e-51 205.3 115 78.3
Nitab4.5_0000647g0090 Nicotiana tabacum HOM05D004365 ORTHO05D005123 2.5e-51 205.3 115 78.3
Peaxi162Scf00164g01133 Petunia axillaris HOM05D004365 ORTHO05D005123 2.5e-51 205.3 115 78.3
Solyc05g053430.3 Solanum lycopersicum HOM05D004365 ORTHO05D005123 2.5e-51 205.3 115 78.3
Sopen05g031930 Solanum pennellii HOM05D004365 ORTHO05D005123 2.5e-51 205.3 115 78.3
PGSC0003DMG400027213 Solanum tuberosum HOM05D004365 ORTHO05D005123 2.5e-51 205.3 115 78.3
GSVIVG01035016001 Vitis vinifera HOM05D004365 ORTHO05D005123 2.5e-51 205.3 115 79.1
CANSAT54G2312 Cannabis sativa HOM05D004365 ORTHO05D005123 3.3e-51 204.9 115 78.3
CiPaw.01G139700 Carya illinoinensis HOM05D004365 ORTHO05D005123 4.3e-51 204.5 115 77.4
Manes.15G005400 Manihot esculenta HOM05D004365 ORTHO05D005123 4.3e-51 204.5 115 78.3
Lalb_Chr18g0058831 Lupinus albus HOM05D004365 ORTHO05D005123 5.6e-51 204.1 115 77.4
ClCG05G006460 Citrullus lanatus HOM05D004365 ORTHO05D005123 7.3e-51 203.8 115 77.4
Haze_01277 Corylus avellana HOM05D004365 ORTHO05D005123 7.3e-51 203.8 115 78.3
Sed0001961 Sechium edule HOM05D004365 ORTHO05D005123 7.3e-51 203.8 115 77.4
Sed0006030 Sechium edule HOM05D004365 ORTHO05D005123 7.3e-51 203.8 115 77.4
SMO174G0170 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 7.3e-51 203.8 114 80.7
Aa31LG8G4020 Aethionema arabicum HOM05D004365 ORTHO05D005123 9.5e-51 203.4 115 80.0
Aqoxy2G02775 Aquilegia oxysepala HOM05D004365 ORTHO05D005123 9.5e-51 203.4 115 77.4
DCAR_023347 Daucus carota HOM05D004365 ORTHO05D005123 9.5e-51 203.4 115 78.3
RcHm_v2.0_Chr4g0424591 Rosa chinensis HOM05D004365 ORTHO05D005123 9.5e-51 203.4 115 79.1
Ciclev10006256m.g Citrus clementina HOM05D004365 ORTHO05D005123 1.2e-50 203.0 115 79.1
Glyma.09G037400 Glycine max HOM05D004365 ORTHO05D005123 1.2e-50 203.0 115 78.3
PSO210G6722 Papaver somniferum HOM05D004365 ORTHO05D005123 1.2e-50 203.0 115 76.5
BcaC09g50324 Brassica carinata HOM05D004365 ORTHO05D005123 1.6e-50 202.6 115 79.1
BcaNung00211 Brassica carinata HOM05D004365 ORTHO05D005123 1.6e-50 202.6 115 79.1
A01p21300 Brassica napus HOM05D004365 ORTHO05D005123 1.6e-50 202.6 115 79.1
Hma1.2p1_0013F.1_g008720 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 1.6e-50 202.6 115 76.5
Phvul.009G256100 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 1.6e-50 202.6 115 79.1
Prupe.1G122000 Prunus persica HOM05D004365 ORTHO05D005123 1.6e-50 202.6 115 78.3
Sc05g0009630 Simmondsia chinensis HOM05D004365 ORTHO05D005123 2.1e-50 202.2 115 77.4
BcaB08g34342 Brassica carinata HOM05D004365 ORTHO05D005123 2.8e-50 201.8 115 79.1
BcaC07g37975 Brassica carinata HOM05D004365 ORTHO05D005123 2.8e-50 201.8 115 79.1
A08p12300 Brassica napus HOM05D004365 ORTHO05D005123 2.8e-50 201.8 115 79.1
BolC8t48354H Brassica oleracea HOM05D004365 ORTHO05D005123 2.8e-50 201.8 115 79.1
Cc03_g00970 Coffea canephora HOM05D004365 ORTHO05D005123 2.8e-50 201.8 115 77.4
TPR.G5757 Trifolium pratense HOM05D004365 ORTHO05D005123 2.8e-50 201.8 115 77.4
Ca_01870_v3 Cicer arietinum L. HOM05D004365 ORTHO05D005123 3.6e-50 201.4 115 78.3
MD16G1157100 Malus domestica HOM05D004365 ORTHO05D005123 3.6e-50 201.4 115 76.5
PSO761G0124 Papaver somniferum HOM05D004365 ORTHO05D005123 3.6e-50 201.4 115 76.5
SMO364G0316 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 3.6e-50 201.4 115 78.3
Thecc.04G297700 Theobroma cacao HOM05D004365 ORTHO05D005123 3.6e-50 201.4 115 79.1
Medtr2g034520 Medicago truncatula HOM05D004365 ORTHO05D005123 4.7e-50 201.1 115 77.4
HPP92_002026 Vanilla planifolia HOM05D004365 ORTHO05D005123 4.7e-50 201.1 115 76.5
AT3G16980 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 6.2e-50 200.7 115 79.1
AL3G29960 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 8.0e-50 200.3 115 78.3
AL7G38770 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 8.0e-50 200.3 115 78.3
AT4G16265 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 8.0e-50 200.3 115 78.3
Carub.0007s2525 Capsella rubella HOM05D004365 ORTHO05D005123 8.0e-50 200.3 115 78.3
Eucgr.H02666 Eucalyptus grandis HOM05D004365 ORTHO05D005123 8.0e-50 200.3 115 76.5
FvH4_4g19480 Fragaria vesca HOM05D004365 ORTHO05D005123 8.0e-50 200.3 115 77.4
FAN07G2773 Fragaria x ananassa HOM05D004365 ORTHO05D005123 8.0e-50 200.3 115 77.4
Gohir.A01G034300 Gossypium hirsutum HOM05D004365 ORTHO05D005123 8.0e-50 200.3 115 78.3
Gohir.D01G023535 Gossypium hirsutum HOM05D004365 ORTHO05D005123 8.0e-50 200.3 115 78.3
Gorai.002G030000 Gossypium raimondii HOM05D004365 ORTHO05D005123 8.0e-50 200.3 115 78.3
Lj6g0010863 Lotus japonicus HOM05D004365 ORTHO05D005123 8.0e-50 200.3 115 76.5
Mapoly0028s0097 Marchantia polymorpha HOM05D004365 ORTHO05D005123 8.0e-50 200.3 115 79.1
SEGI_37796 Sequoiadendron giganteum HOM05D004365 ORTHO05D005123 1.0e-49 199.9 115 75.7
Carub.0003s1673 Capsella rubella HOM05D004365 ORTHO05D005123 1.4e-49 199.5 115 78.3
CDE09G0896 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 1.4e-49 199.5 115 74.8
Duzib052G0793 Durio zibethinus HOM05D004365 ORTHO05D005123 1.4e-49 199.5 115 78.3
Thhalv10021989m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 1.4e-49 199.5 115 77.4
CDE02G0371 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 1.8e-49 199.1 115 73.9
THA.LOC104820300 Tarenaya hassleriana HOM05D004365 ORTHO05D005123 1.8e-49 199.1 115 76.5
Thhalv10026603m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 2.3e-49 198.7 115 77.4
Potri.008G106900 Populus trichocarpa HOM05D004365 ORTHO05D005123 2.3e-49 198.7 115 76.5
arahy.Tifrunner.gnm1.ann1.MX4EIU Arachis hypogaea HOM05D004365 ORTHO05D005123 3.1e-49 198.4 114 75.4
Cpa.g.sc9.86 Carica papaya HOM05D004365 ORTHO05D005123 5.2e-49 197.6 115 78.3
Glyma.15G142700 Glycine max HOM05D004365 ORTHO05D005123 5.2e-49 197.6 115 75.7
vmacro15189 Vaccinium macrocarpon HOM05D004365 ORTHO05D005123 5.2e-49 197.6 135 68.1
Psat6g078760 Pisum sativum HOM05D004365 ORTHO05D005123 6.8e-49 197.2 115 76.5
Sabra10G0110500 Salix brachista HOM05D004365 ORTHO05D005123 6.8e-49 197.2 115 76.5
Duzib212G0477 Durio zibethinus HOM05D004365 ORTHO05D005123 8.9e-49 196.8 115 77.4
Sabra08G0080800 Salix brachista HOM05D004365 ORTHO05D005123 8.9e-49 196.8 115 75.7
CARHR222650 Cardamine hirsuta HOM05D004365 ORTHO05D005123 1.5e-48 196.1 115 75.7
Pp3c18_17910 Physcomitrium patens HOM05D004365 ORTHO05D005123 1.5e-48 196.1 115 75.7
TWI09G0163 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.5e-48 196.1 115 75.7
MD13G1156200 Malus domestica HOM05D004365 ORTHO05D005123 2.0e-48 195.7 115 73.9
Nitab4.5_0006365g0010 Nicotiana tabacum HOM05D004365 ORTHO05D005123 7.5e-48 193.7 134 67.2
CARHR092230 Cardamine hirsuta HOM05D004365 ORTHO05D005123 9.8e-48 193.4 115 76.5
TWI53G1753 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.3e-47 193.0 114 74.6
Zm00001eb088460 Zea mays HOM05D004365 ORTHO05D005123 2.9e-47 191.8 115 72.2
Dinv44302 Davidia involucrata HOM05D004365 ORTHO05D005123 3.7e-47 191.4 115 73.0
arahy.Tifrunner.gnm1.ann1.79Y4XM Arachis hypogaea HOM05D004365 ORTHO05D005123 8.3e-47 190.3 107 80.4
arahy.Tifrunner.gnm1.ann1.C4ZZV2 Arachis hypogaea HOM05D004365 ORTHO05D005123 8.3e-47 190.3 107 80.4
Migut.N00047 Erythranthe guttata HOM05D004365 ORTHO05D005123 1.1e-46 189.9 105 80.0
TWI53G0542 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.9e-46 189.1 114 74.6
Os12g0560400 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 4.1e-46 188.0 105 79.0
BolC1t02605H Brassica oleracea HOM05D004365 ORTHO05D005123 5.4e-46 187.6 105 81.0
Hund03115 Selenicereus undatus HOM05D004365 ORTHO05D005123 5.4e-46 187.6 105 80.0
Hund11961 Selenicereus undatus HOM05D004365 ORTHO05D005123 7.0e-46 187.2 105 79.0
BraA08t33228Z Brassica rapa HOM05D004365 ORTHO05D005123 9.2e-46 186.8 105 81.0
SpUn0413_0020 Schrenkiella parvula HOM05D004365 ORTHO05D005123 2.7e-45 185.3 105 80.0
Lalb_Chr08g0234431 Lupinus albus HOM05D004365 ORTHO05D005123 4.6e-45 184.5 111 73.0
SalBow2G2782 Salvia bowleyana HOM05D004365 ORTHO05D005123 6.0e-45 184.1 127 67.7
A09p28560 Brassica napus HOM05D004365 ORTHO05D005123 1.7e-44 182.6 111 73.9
BraA09t38417Z Brassica rapa HOM05D004365 ORTHO05D005123 1.7e-44 182.6 111 73.9
EL10Ac3g05464 Beta vulgaris HOM05D004365 ORTHO05D005123 3.9e-44 181.4 115 69.6
Os03g0102200 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 3.9e-44 181.4 115 68.7
BcaC04g21057 Brassica carinata HOM05D004365 ORTHO05D005123 2.5e-43 178.7 111 72.1
C09p36150 Brassica napus HOM05D004365 ORTHO05D005123 3.3e-43 178.3 111 72.1
BolC9t56454H Brassica oleracea HOM05D004365 ORTHO05D005123 3.3e-43 178.3 111 72.1
Glyma.07G241200 Glycine max HOM05D004365 ORTHO05D005123 4.0e-41 171.4 115 63.5
Phvul.003G112600 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 6.8e-41 170.6 115 62.6
Potri.010G142500 Populus trichocarpa HOM05D004365 ORTHO05D005123 6.8e-41 170.6 93 78.5
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 1.2e-40 169.9 115 63.5
Sp7g14780 Schrenkiella parvula HOM05D004365 ORTHO05D005123 1.2e-40 169.9 130 63.8
Lj4g0028172 Lotus japonicus HOM05D004365 ORTHO05D005123 1.5e-40 169.5 115 65.2
HPP92_005120 Vanilla planifolia HOM05D004365 ORTHO05D005123 9.8e-40 166.8 114 61.4
arahy.Tifrunner.gnm1.ann1.2XVX11 Arachis hypogaea HOM05D004365 ORTHO05D005123 2.2e-39 165.6 113 65.5
VMungo1215G2752 Vigna mungo HOM05D004365 ORTHO05D005123 8.3e-39 163.7 115 60.9
Dinv15193 Davidia involucrata HOM05D004365 ORTHO05D005123 1.4e-38 162.9 98 75.5
VMungo1309G0143 Vigna mungo HOM05D004365 ORTHO05D005123 8.6e-36 153.7 88 78.4
DCAR_027008 Daucus carota HOM05D004365 ORTHO05D005123 9.5e-35 150.2 180 45.6
ATR0665G356 Amborella trichopoda HOM05D004365 ORTHO05D005123 4.7e-34 147.9 88 73.9
Rhsim02G0004900 Rhododendron simsii HOM05D004365 ORTHO05D005123 4.0e-33 144.8 90 73.3
TPR.G10905 Trifolium pratense HOM05D004365 ORTHO05D005123 4.0e-33 144.8 88 70.5
AUR62041403 Chenopodium quinoa HOM05D004365 ORTHO05D005123 8.9e-33 143.7 93 71.0
Sabra10G0110300 Salix brachista HOM05D004365 ORTHO05D005123 8.9e-33 143.7 115 60.0
Os07g0615800 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.5e-32 142.9 115 51.3
SGA_v2.0_scaffold119G32662 Striga asiatica HOM05D004365 ORTHO05D005123 2.6e-32 142.1 84 77.4
BraA01t02037Z Brassica rapa HOM05D004365 ORTHO05D005123 1.3e-31 139.8 81 79.0
AUR62016130 Chenopodium quinoa HOM05D004365 ORTHO05D005123 2.2e-31 139.0 80 77.5
FAN12G3053 Fragaria x ananassa HOM05D004365 ORTHO05D005123 3.8e-31 138.3 80 78.8
FAN12G1077 Fragaria x ananassa HOM05D004365 ORTHO05D005123 8.4e-31 137.1 82 75.6
FvH4_3g15650 Fragaria vesca HOM05D004365 ORTHO05D005123 1.4e-30 136.3 80 78.8
BcaB04g18375 Brassica carinata HOM05D004365 ORTHO05D005123 1.9e-30 136.0 80 77.5
Atru.chr4.3028 Acer truncatum HOM05D004365 ORTHO05D005123 9.2e-30 133.7 79 75.9
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 9.2e-30 133.7 77 79.2
Haze_26633 Corylus avellana HOM05D004365 ORTHO05D005123 2.7e-29 132.1 109 54.1
Zm00001eb138580 Zea mays HOM05D004365 ORTHO05D005123 3.5e-29 131.7 81 71.6
Zm00001eb086380 Zea mays HOM05D004365 ORTHO05D005123 4.6e-29 131.3 80 72.5
Zm00001eb230190 Zea mays HOM05D004365 ORTHO05D005123 4.6e-29 131.3 81 71.6
MCO01G087 Micromonas commoda HOM05D004365 ORTHO05D005123 6.6e-28 127.5 109 51.4
Eucgr.H02672 Eucalyptus grandis HOM05D004365 ORTHO05D005123 8.6e-28 127.1 84 69.0
AL7G38230 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 4.6e-21 104.8 61 77.0
Zm00001eb270680 Zea mays HOM05D004365 ORTHO05D005123 2.3e-20 102.4 89 61.8
AagrBONN_evm.TU.Sc2ySwM_117.3306 Anthoceros agrestis HOM05D004365 ORTHO05D005123 3.9e-20 101.7 109 47.7
Cre12.g505750 Chlamydomonas reinhardtii HOM05D004365 ORTHO05D005123 2.5e-19 99.0 111 42.3
PRCOL_00000204 Prasinoderma coloniale HOM05D004365 ORTHO05D005123 2.5e-19 99.0 111 45.9
Zm00001eb137030 Zea mays HOM05D004365 ORTHO05D005123 7.3e-19 97.4 61 73.8
Zm00001eb327460 Zea mays HOM05D004365 ORTHO05D005123 8.1e-18 94.0 93 43.0
Hma1.2p1_0096F.1_g047650 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 6.9e-17 90.9 56 71.4
SHI00177 Sapria himalayana HOM05D004365 ORTHO05D005123 1.2e-16 90.1 71 59.2
Hma1.2p1_0234F.1_g098400 Hydrangea macrophylla HOM05D001088 ORTHO05D005123 2.2e-15 85.9 82 51.2
Mapoly0020s0069 Marchantia polymorpha HOM05D004365 ORTHO05D005123 1.1e-14 83.6 116 36.2
BcaB01g01499 Brassica carinata HOM05D004365 ORTHO05D005123 2.4e-14 82.4 48 72.9
Cfa024902 Carpinus fangiana HOM05D004365 ORTHO05D005123 4.6e-13 78.2 65 49.2
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 6.2e-10 67.8 110 34.5
Os11g0676650 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.4e-09 66.6 63 50.8
SMO304G0059 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 1.8e-09 66.2 105 36.2
AagrBONN_evm.TU.Sc2ySwM_344.170 Anthoceros agrestis HOM05D001942 ORTHO05D001996 3.1e-09 65.5 104 32.7
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 4.0e-09 65.1 112 30.4
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 2.0e-08 62.8 113 33.6
TAR374G1259 Trochodendron aralioides HOM05D006029 ORTHO05D007439 2.0e-08 62.8 111 30.6
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 7.6e-08 60.8 111 30.6
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 9.9e-08 60.5 111 30.6
Nn1g00349 Nelumbo nucifera HOM05D006029 ORTHO05D007439 9.9e-08 60.5 111 30.6
Phvul.008G101000 Phaseolus vulgaris HOM05D006029 ORTHO05D007439 9.9e-08 60.5 118 31.4
CAN.G694.9 Capsicum annuum HOM05D006029 ORTHO05D007439 3.8e-07 58.5 111 28.8
Rhsim01G0175700 Rhododendron simsii HOM05D006029 ORTHO05D007439 6.4e-07 57.8 113 29.2
vmacro12594 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 8.4e-07 57.4 113 29.2
GSVIVG01027190001 Vitis vinifera HOM05D006029 ORTHO05D007439 1.1e-06 57.0 118 28.8
Mapoly0122s0031 Marchantia polymorpha HOM05D004365 ORTHO05D253640 1.4e-06 56.6 84 35.7
Peaxi162Scf00156g00617 Petunia axillaris HOM05D006029 ORTHO05D007439 2.4e-06 55.8 118 29.7
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 2.4e-06 55.8 114 27.2
Solyc05g055890.3 Solanum lycopersicum HOM05D006029 ORTHO05D007439 2.4e-06 55.8 112 33.9
Sopen05g034290 Solanum pennellii HOM05D006029 ORTHO05D007439 2.4e-06 55.8 112 33.9
PGSC0003DMG402023468 Solanum tuberosum HOM05D006029 ORTHO05D007439 3.2e-06 55.5 112 33.9
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 5.5e-06 54.7 111 27.9


User provided reference genes

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