Gene: Os03g0102200

General Information

Structural Information

  • Species Oryza sativa ssp. japonica
  • Gene Identifier Os03g0102200
  • Transcript Identifier Os03t0102200-01
  • Gene Type Coding gene
  • Location chr03 : 148264-148752 : positive

Gene Family Information

  • ID HOM05D004365
  • #Genes/#Species 164/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Os03t0102200-01
  • MSU-ID LOC_Os03g01230.1
  • MSU-ID LOC_Os03g01230.2
  • uniprot Q10T38

Descriptions

  • Description Similar to DNA-directed RNA polymerase II 14.5 kDa polypeptide (EC 2.7.7.6) (RPB9) (RPB14.5).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006283
IBA
GOA Databasetranscription-coupled nucleotide-excision repair
GO:0080188
ISO
PLAZA Integrative Orthologygene silencing by RNA-directed DNA methylation AT4G16265
GO:0006379
IEA
GOA DatabasemRNA cleavage
GO:0006379
IEA
InterPromRNA cleavage
GO:0006351
IEA
GOA Databasetranscription, DNA-templated
GO:0006351
IEA
InterProtranscription, DNA-templated
GO:0001193
IBA
GOA Databasemaintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter
GO:0006367
IBA
GOA Databasetranscription initiation from RNA polymerase II promoter

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G16980
GO:0008270
IEA
GOA Databasezinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003899
IBA
IEA
GOA DatabaseDNA-directed 5'-3' RNA polymerase activity
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000418
ISO
PLAZA Integrative OrthologyRNA polymerase IV complex AT4G16265
GO:0000419
ISO
PLAZA Integrative OrthologyRNA polymerase V complex AT4G16265
GO:0005730
IEA
GOA Databasenucleolus
GO:0005665
IBA
GOA DatabaseRNA polymerase II, core complex
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012164 DNA-directed RNA polymerase subunit/transcription factor S
IPR034012 Pol II subunit B9, C-terminal zinc ribbon
IPR001529 DNA-directed RNA polymerase, M/15kDa subunit
IPR001222 Zinc finger, TFIIS-type
Mapman id Description
15.1.6.7 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I-V shared regulatory components.subunit 9