Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G224001 Manihot esculenta HOM05D006136 ORTHO05D007244 0.0e+00 1181.8 596 100.0
Manes.11G052190 Manihot esculenta HOM05D006136 ORTHO05D007244 0.0e+00 1161.0 596 98.7
Cfa012873 Carpinus fangiana HOM05D006136 ORTHO05D007244 8.6e-127 458.4 645 44.3
GSVIVG01038350001 Vitis vinifera HOM05D006136 ORTHO05D007244 2.2e-122 443.7 613 44.0
CiPaw.07G237600 Carya illinoinensis HOM05D006136 ORTHO05D007244 3.2e-121 439.9 623 45.1
Potri.018G151300 Populus trichocarpa HOM05D006136 ORTHO05D007244 1.7e-119 434.1 590 46.3
QL05p072260 Quercus lobata HOM05D000321 ORTHO05D007244 7.3e-118 428.7 602 43.0
Dinv12632 Davidia involucrata HOM05D006136 ORTHO05D002774 1.2e-115 421.4 534 46.8
CSS0003139 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 1.5e-115 421.0 607 41.5
QL11p005727 Quercus lobata HOM05D006136 ORTHO05D007244 4.1e-113 412.9 771 36.7
Cpa.g.sc46.113 Carica papaya HOM05D006136 ORTHO05D007244 7.8e-112 408.7 756 37.6
TWI32G0914 Tripterygium wilfordii HOM05D006136 ORTHO05D007244 1.3e-111 407.9 659 40.8
Sabra18G0127000 Salix brachista HOM05D006136 ORTHO05D007244 2.5e-110 403.7 593 44.5
TAR626G0660 Trochodendron aralioides HOM05D006136 ORTHO05D007244 4.4e-107 392.9 612 40.7
Thecc.09G202200 Theobroma cacao HOM05D006136 ORTHO05D007244 2.1e-101 374.0 684 38.6
Lj9A583T57 Lonicera japonica HOM05D006136 ORTHO05D007244 8.1e-101 372.1 698 38.5
Ciclev10007497m.g Citrus clementina HOM05D006136 ORTHO05D007244 9.9e-99 365.2 789 35.7
Atru.chr7.1014 Acer truncatum HOM05D006136 ORTHO05D007244 2.2e-98 364.0 797 34.6
Glyma.09G084800 Glycine max HOM05D006136 ORTHO05D007244 7.1e-97 359.0 609 39.9
Prupe.1G000700 Prunus persica HOM05D006136 ORTHO05D007244 2.7e-96 357.1 633 38.7
arahy.Tifrunner.gnm1.ann1.46MDAV Arachis hypogaea HOM05D006136 ORTHO05D007244 7.8e-96 355.5 625 39.7
Haze_21244 Corylus avellana HOM05D006136 ORTHO05D007244 1.7e-95 354.4 571 42.0
Gorai.004G023000 Gossypium raimondii HOM05D006136 ORTHO05D007244 2.5e-94 350.5 694 36.2
Gohir.D08G026500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 7.3e-94 349.0 694 35.9
Lalb_Chr08g0233201 Lupinus albus HOM05D006136 ORTHO05D007244 9.6e-94 348.6 664 38.0
Duzib170G0744 Durio zibethinus HOM05D006136 ORTHO05D007244 2.1e-93 347.4 696 37.2
Glyma.15G193100 Glycine max HOM05D006136 ORTHO05D007244 3.6e-93 346.7 617 38.6
Gohir.A08G016500 Gossypium hirsutum HOM05D006136 ORTHO05D007244 4.7e-93 346.3 701 36.8
COL.COLO4_09001 Corchorus olitorius HOM05D006136 ORTHO05D007244 2.4e-92 344.0 713 36.2
RcHm_v2.0_Chr4g0384741 Rosa chinensis HOM05D006136 ORTHO05D007244 1.7e-90 337.8 677 36.2
CSS0019621 Camellia sinensis var. sinensis HOM05D006136 ORTHO05D007244 3.5e-88 330.1 452 43.6
Lj6g0010551 Lotus japonicus HOM05D006136 ORTHO05D007244 6.0e-88 329.3 666 35.6
Phvul.009G217200 Phaseolus vulgaris HOM05D006136 ORTHO05D007244 6.0e-88 329.3 629 36.9
Oeu000955.1 Olea europaea HOM05D006136 ORTHO05D007244 1.0e-87 328.6 602 37.5
FAN17G2087 Fragaria x ananassa HOM05D006136 ORTHO05D007244 3.9e-87 326.6 663 36.0
MSTRG.26507 Avicennia marina HOM05D006136 ORTHO05D007244 6.6e-87 325.9 627 34.6
Eucgr.C02149 Eucalyptus grandis HOM05D006136 ORTHO05D007244 7.3e-86 322.4 687 36.1
MELO3C010014.2 Cucumis melo HOM05D006136 ORTHO05D007244 1.3e-85 321.6 671 35.5
DCAR_020445 Daucus carota HOM05D006136 ORTHO05D002774 5.3e-84 316.2 700 32.3
Rhsim08G0117200 Rhododendron simsii HOM05D006136 ORTHO05D007244 2.6e-83 313.9 693 35.9
VMungo1309G0146 Vigna mungo HOM05D006136 ORTHO05D007244 9.9e-83 312.0 634 36.3
EL10Ac2g03821 Beta vulgaris HOM05D006136 ORTHO05D007244 2.2e-82 310.8 658 34.7
Psat1g019160 Pisum sativum HOM05D006136 ORTHO05D007244 3.8e-82 310.1 698 33.1
Cc06_g23510 Coffea canephora HOM05D006136 ORTHO05D007244 4.9e-82 309.7 583 38.1
MD04G1000700 Malus domestica HOM05D006136 ORTHO05D007244 4.9e-82 309.7 724 34.1
vmacro17832 Vaccinium macrocarpon HOM05D006136 ORTHO05D007244 1.9e-81 307.8 657 36.2
FAN12G0507 Fragaria x ananassa HOM05D006136 ORTHO05D007244 2.1e-80 304.3 672 34.4
PGR044G0474 Punica granatum HOM05D006136 ORTHO05D007244 1.0e-79 302.0 649 34.5
SalBow5G5580 Salvia bowleyana HOM05D006136 ORTHO05D007244 1.0e-79 302.0 673 31.4
CsaV3_1G044190 Cucumis sativus L. HOM05D006136 ORTHO05D007244 1.7e-79 301.2 692 34.2
Medtr2g048340 Medicago truncatula HOM05D006136 ORTHO05D007244 6.6e-79 299.3 680 32.4
Sc06g0001020 Simmondsia chinensis HOM05D006136 ORTHO05D007244 2.5e-78 297.4 711 33.9
ECA234G2139 Erigeron canadensis HOM05D006136 ORTHO05D007244 3.3e-78 297.0 691 31.8
ClCG03G011600 Citrullus lanatus HOM05D006136 ORTHO05D007244 1.6e-77 294.7 685 33.1
Aqoxy7G02564 Aquilegia oxysepala HOM05D006136 ORTHO05D007244 3.1e-76 290.4 798 30.6
CANSAT01G2594 Cannabis sativa HOM05D006136 ORTHO05D007244 3.1e-76 290.4 657 34.4
Lsat_1_v5_gn_5_82020 Lactuca sativa HOM05D006136 ORTHO05D007244 6.9e-76 289.3 586 35.0
Ca_02520_v3 Cicer arietinum L. HOM05D006136 ORTHO05D007244 2.0e-75 287.7 566 35.5
HanXRQChr10g0309281 Helianthus annuus HOM05D006136 ORTHO05D007244 2.2e-74 284.3 676 32.7
Peaxi162Scf00474g00018 Petunia axillaris HOM05D006136 ORTHO05D007244 2.9e-74 283.9 671 33.2
MBI16_g40727_MAGBIO Magnolia biondii HOM05D006136 ORTHO05D007244 1.4e-73 281.6 628 35.0
PGSC0003DMG400013541 Solanum tuberosum HOM05D006136 ORTHO05D007244 2.4e-73 280.8 720 30.8
Migut.L01610 Erythranthe guttata HOM05D006136 ORTHO05D007244 2.3e-71 274.2 689 30.9
AUR62009114 Chenopodium quinoa HOM05D000163 ORTHO05D007244 3.9e-71 273.5 727 31.4
Nitab4.5_0000807g0150 Nicotiana tabacum HOM05D006136 ORTHO05D007244 5.1e-71 273.1 736 31.1
CARHR271930 Cardamine hirsuta HOM05D006136 ORTHO05D007244 8.7e-71 272.3 750 31.5
Sp6g19810 Schrenkiella parvula HOM05D006136 ORTHO05D007244 1.5e-70 271.6 677 34.1
AUR62039148 Chenopodium quinoa HOM05D006136 ORTHO05D007244 7.4e-70 269.2 724 31.4
FAN12G3399 Fragaria x ananassa HOM05D006136 ORTHO05D007244 9.6e-70 268.9 453 38.2
FAN22G1396 Fragaria x ananassa HOM05D006136 ORTHO05D007244 3.1e-68 263.8 598 34.4
Thhalv10012942m.g Eutrema salsugineum HOM05D006136 ORTHO05D007244 9.0e-68 262.3 660 34.1
Actinidia33603 Actinidia chinensis HOM05D006136 ORTHO05D007244 1.2e-67 261.9 327 46.8
AL8G34230 Arabidopsis lyrata HOM05D006136 ORTHO05D007244 2.9e-66 257.3 776 30.3
PSO478G4925 Papaver somniferum HOM05D006136 ORTHO05D007244 3.8e-66 256.9 434 37.8
Nn5g26953 Nelumbo nucifera HOM05D006136 ORTHO05D007244 6.5e-66 256.1 501 37.3
PSO782G1690 Papaver somniferum HOM05D006136 ORTHO05D007244 4.2e-65 253.4 434 37.6
Nitab4.5_0000170g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 4.6e-64 250.0 746 29.6
THA.LOC104803376 Tarenaya hassleriana HOM05D006136 ORTHO05D007244 4.3e-62 243.4 736 31.0
C09p50030 Brassica napus HOM05D006136 ORTHO05D007244 7.4e-62 242.7 719 30.6
AT5G58130 Arabidopsis thaliana HOM05D006136 ORTHO05D007244 1.3e-61 241.9 424 40.3
BolC9t57856H Brassica oleracea HOM05D006136 ORTHO05D007244 1.6e-61 241.5 719 30.5
Carub.0008s1868 Capsella rubella HOM05D006136 ORTHO05D007244 1.6e-61 241.5 439 38.0
Sopen07g022390 Solanum pennellii HOM05D006136 ORTHO05D007244 1.6e-61 241.5 514 34.6
SGA_v2.0_scaffold21G09584 Striga asiatica HOM05D006136 ORTHO05D007244 4.8e-61 240.0 632 31.5
A10p16060 Brassica napus HOM05D006136 ORTHO05D007244 6.2e-61 239.6 380 42.1
BcaB08g36165 Brassica carinata HOM05D006136 ORTHO05D007244 5.3e-60 236.5 394 39.3
BraA10t43623Z Brassica rapa HOM05D006136 ORTHO05D007244 6.9e-60 236.1 380 41.6
Aa31LG3G13960 Aethionema arabicum HOM05D006136 ORTHO05D007244 9.0e-60 235.7 428 39.7
Os02g0138200 Oryza sativa ssp. japonica HOM05D006136 ORTHO05D007244 2.0e-59 234.6 606 32.0
BcaC04g19905 Brassica carinata HOM05D006136 ORTHO05D007244 4.5e-59 233.4 723 29.6
Zm00001eb209220 Zea mays HOM05D006136 ORTHO05D007244 1.0e-58 232.3 606 32.8
ATR0626G098 Amborella trichopoda HOM05D006136 ORTHO05D007244 1.3e-58 231.9 608 30.4
RcHm_v2.0_Chr5g0003141 Rosa chinensis HOM05D006136 ORTHO05D007244 2.9e-58 230.7 606 33.2
unitig_699.g19255 Utricularia gibba HOM05D006136 ORTHO05D007244 2.1e-56 224.6 424 34.9
HPP92_017041 Vanilla planifolia HOM05D006136 ORTHO05D007244 8.7e-55 219.2 452 33.4
TPR.G18712 Trifolium pratense HOM05D006136 ORTHO05D007244 7.4e-54 216.1 622 29.6
SEGI_05126 Sequoiadendron giganteum HOM05D006136 ORTHO05D007244 1.2e-48 198.7 230 47.8
PGR044G0304 Punica granatum HOM05D006136 ORTHO05D007244 4.6e-48 196.8 593 31.7
GSVIVG01038333001 Vitis vinifera HOM05D006136 ORTHO05D007244 5.7e-46 189.9 189 53.4
CDE05G3219 Ceratophyllum demersum HOM05D006136 ORTHO05D007244 2.2e-37 161.4 407 31.9
Lj1g0026291 Lotus japonicus HOM05D006136 ORTHO05D007244 2.6e-35 154.5 321 35.5
Solyc07g042740.3 Solanum lycopersicum HOM05D006136 ORTHO05D007244 7.7e-35 152.9 196 42.9
arahy.Tifrunner.gnm1.ann1.27MYTD Arachis hypogaea HOM05D006136 ORTHO05D007244 4.0e-31 140.6 140 55.0
arahy.Tifrunner.gnm1.ann1.QC7K1D Arachis hypogaea HOM05D006136 ORTHO05D007244 1.1e-28 132.5 95 67.4
arahy.Tifrunner.gnm1.ann1.Q88MA9 Arachis hypogaea HOM05D006136 ORTHO05D007244 3.5e-27 127.5 105 60.0
Mapoly0169s0023 Marchantia polymorpha HOM05D006136 ORTHO05D007244 7.7e-27 126.3 197 40.6
FvH4_4g00130 Fragaria vesca HOM05D006136 ORTHO05D007244 2.5e-25 121.3 418 29.9
arahy.Tifrunner.gnm1.ann1.SWI1TY Arachis hypogaea HOM05D006136 ORTHO05D007244 2.3e-23 114.8 269 32.3
Sed0020259 Sechium edule HOM05D006136 ORTHO05D007244 3.0e-23 114.4 468 26.1
AagrBONN_evm.TU.Sc2ySwM_228.2439 Anthoceros agrestis HOM05D006136 ORTHO05D007244 8.8e-23 112.8 338 29.6
SMO367G1245 Selaginella moellendorffii HOM05D006136 ORTHO05D007244 1.1e-20 105.9 662 24.3
Hund03317 Selenicereus undatus HOM05D006136 ORTHO05D007244 1.1e-20 105.9 484 26.2
Pp3c1_8430 Physcomitrium patens HOM05D006136 ORTHO05D007244 1.1e-17 95.9 98 49.0
Glyma.07G231200 Glycine max HOM05D003235 ORTHO05D007244 6.1e-16 90.1 76 53.9
Solyc07g042700.4 Solanum lycopersicum HOM05D006136 ORTHO05D007244 8.8e-15 86.3 157 36.3
Nitab4.5_0002310g0140 Nicotiana tabacum HOM05D006136 ORTHO05D007244 3.4e-14 84.3 193 32.1
Hma1.2p1_2895F.1_g329976 Hydrangea macrophylla HOM05D006136 ORTHO05D007244 8.3e-13 79.7 59 67.8
CBR_g39420 Chara braunii HOM05D006136 ORTHO05D007244 4.1e-12 77.4 145 35.9
Lsat_1_v5_gn_5_81880 Lactuca sativa HOM05D006136 ORTHO05D007244 5.9e-11 73.6 177 28.2
TPR.G20669 Trifolium pratense HOM05D006136 ORTHO05D007244 1.9e-09 68.6 78 47.4
BcaC03g14120 Brassica carinata HOM05D009052 ORTHO05D011796 3.6e-08 64.3 114 40.4
C02p13590 Brassica napus HOM05D006136 ORTHO05D007244 2.3e-07 61.6 76 48.7
BolC2t07471H Brassica oleracea HOM05D006136 ORTHO05D007244 2.3e-07 61.6 76 48.7
VMungo1309G2339 Vigna mungo HOM05D006136 ORTHO05D007244 6.8e-07 60.1 157 30.6
MBI16_g40728_MAGBIO Magnolia biondii HOM05D006136 ORTHO05D007244 1.2e-06 59.3 74 47.3
TPR.G24042 Trifolium pratense HOM05D006136 ORTHO05D007244 2.6e-06 58.2 44 63.6


User provided reference genes

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