Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.02G222200 Manihot esculenta HOM05D007201 ORTHO05D009122 3.3e-204 714.9 385 100.0
TAR626G0209 Trochodendron aralioides HOM05D007201 ORTHO05D009122 2.6e-100 369.8 400 52.5
Thecc.09G202300 Theobroma cacao HOM05D007201 ORTHO05D009122 9.8e-100 367.9 403 53.8
Potri.006G081100 Populus trichocarpa HOM05D007201 ORTHO05D009122 2.3e-96 356.7 442 52.5
FvH4_4g00131 Fragaria vesca HOM05D007201 ORTHO05D009122 5.0e-96 355.5 386 50.8
CSS0027843 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.1e-95 354.4 407 49.6
QL11p005700 Quercus lobata HOM05D007201 ORTHO05D009122 1.5e-95 354.0 402 51.2
Ciclev10008517m.g Citrus clementina HOM05D007201 ORTHO05D009122 7.3e-95 351.7 388 52.3
Atru.chr7.298 Acer truncatum HOM05D007201 ORTHO05D009122 9.5e-95 351.3 378 52.9
Gorai.012G009900 Gossypium raimondii HOM05D007201 ORTHO05D009122 2.1e-94 350.1 402 51.5
RcHm_v2.0_Chr4g0384751 Rosa chinensis HOM05D007201 ORTHO05D009122 3.6e-94 349.4 394 49.2
Sabra06G0061200 Salix brachista HOM05D007201 ORTHO05D009122 1.8e-93 347.1 461 46.9
Haze_21242 Corylus avellana HOM05D007201 ORTHO05D009122 2.2e-91 340.1 416 47.8
CiPaw.15G000100 Carya illinoinensis HOM05D007201 ORTHO05D009122 2.9e-91 339.7 411 46.2
Gohir.D04G008200 Gossypium hirsutum HOM05D007201 ORTHO05D009122 1.4e-90 337.4 390 51.0
COL.COLO4_09000 Corchorus olitorius HOM05D007201 ORTHO05D009122 1.9e-90 337.0 414 51.0
FAN12G0236 Fragaria x ananassa HOM05D007201 ORTHO05D009122 5.4e-90 335.5 386 48.7
Cfa012872 Carpinus fangiana HOM05D007201 ORTHO05D009122 1.0e-88 331.3 415 47.0
Actinidia03796 Actinidia chinensis HOM05D007201 ORTHO05D009122 1.7e-88 330.5 405 50.6
Rhsim03G0269700 Rhododendron simsii HOM05D007201 ORTHO05D009122 3.0e-88 329.7 403 48.6
Prupe.1G000600 Prunus persica HOM05D007201 ORTHO05D009122 1.1e-87 327.8 395 46.3
MELO3C010035.2 Cucumis melo HOM05D007201 ORTHO05D009122 3.3e-87 326.2 394 49.5
CsaV3_1G044360 Cucumis sativus L. HOM05D007201 ORTHO05D009122 1.6e-86 323.9 392 48.7
Nn8g41282 Nelumbo nucifera HOM05D007201 ORTHO05D009122 1.8e-85 320.5 388 49.7
PGSC0003DMG400002893 Solanum tuberosum HOM05D007201 ORTHO05D009122 7.1e-82 308.5 435 49.0
Sc10g0006090 Simmondsia chinensis HOM05D007201 ORTHO05D009122 1.7e-80 303.9 397 47.1
Eucgr.C00055 Eucalyptus grandis HOM05D007201 ORTHO05D009122 1.2e-78 297.7 401 46.1
Solyc12g009390.2 Solanum lycopersicum HOM05D007201 ORTHO05D009122 1.2e-78 297.7 445 46.1
PSO339G5324 Papaver somniferum HOM05D007201 ORTHO05D009122 8.1e-78 295.0 391 46.5
Cpa.g.sc46.114 Carica papaya HOM05D007201 ORTHO05D009122 1.1e-77 294.7 419 45.3
Lju50A20G7 Lonicera japonica HOM05D007201 ORTHO05D009122 3.1e-77 293.1 429 44.1
MD04G1000600 Malus domestica HOM05D007201 ORTHO05D009122 9.9e-76 288.1 397 43.1
HanXRQChr10g0309261 Helianthus annuus HOM05D007201 ORTHO05D009122 1.3e-75 287.7 288 55.2
Cc06_g23490 Coffea canephora HOM05D007201 ORTHO05D009122 1.9e-74 283.9 435 43.2
SHI24431 Sapria himalayana HOM05D007201 ORTHO05D009122 3.2e-74 283.1 284 54.9
arahy.Tifrunner.gnm1.ann1.X4HTYC Arachis hypogaea HOM05D007201 ORTHO05D009122 1.2e-73 281.2 431 43.6
Phvul.011G018600 Phaseolus vulgaris HOM05D007201 ORTHO05D009122 4.6e-73 279.3 407 44.7
PGR142G4385 Punica granatum HOM05D007201 ORTHO05D009122 4.6e-73 279.3 394 46.7
Sopen12g004380 Solanum pennellii HOM05D007201 ORTHO05D009122 7.8e-73 278.5 433 46.4
VMungo1127G0228 Vigna mungo HOM05D007201 ORTHO05D009122 1.7e-72 277.3 413 43.3
Hund22525 Selenicereus undatus HOM05D007201 ORTHO05D009122 2.3e-72 276.9 396 44.7
Psat7g169960 Pisum sativum HOM05D007201 ORTHO05D009122 5.1e-72 275.8 397 49.4
arahy.Tifrunner.gnm1.ann1.G7GJBK Arachis hypogaea HOM05D007201 ORTHO05D009122 3.3e-71 273.1 436 42.9
Duzib168G1263 Durio zibethinus HOM05D007201 ORTHO05D009122 5.6e-71 272.3 403 52.1
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 7.3e-71 271.9 385 42.9
Peaxi162Scf00047g02450 Petunia axillaris HOM05D007201 ORTHO05D009122 1.6e-70 270.8 402 45.5
Dinv26498 Davidia involucrata HOM05D007201 ORTHO05D009122 8.1e-70 268.5 404 44.3
Aqoxy7G02518 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 2.4e-69 266.9 409 43.0
GSVIVG01034266001 Vitis vinifera HOM05D007201 ORTHO05D009122 2.0e-68 263.8 395 44.1
ECA240G0013 Erigeron canadensis HOM05D006383 ORTHO05D007815 2.6e-68 263.5 406 41.9
Lj3g0009807 Lotus japonicus HOM05D007201 ORTHO05D009122 3.4e-68 263.1 399 43.9
TPR.G28027 Trifolium pratense HOM05D007201 ORTHO05D009122 3.4e-68 263.1 460 40.9
vmacro22702 Vaccinium macrocarpon HOM05D007201 ORTHO05D009122 5.8e-68 262.3 506 38.3
Nitab4.5_0000073g0490 Nicotiana tabacum HOM05D007201 ORTHO05D009122 1.7e-67 260.8 455 42.2
Lsat_1_v5_gn_5_80700 Lactuca sativa HOM05D007201 ORTHO05D009122 3.8e-67 259.6 400 42.5
ECA234G1264 Erigeron canadensis HOM05D007201 ORTHO05D009122 4.9e-67 259.2 384 43.0
CANSAT25G2467 Cannabis sativa HOM05D007201 ORTHO05D009122 8.4e-67 258.5 538 33.6
FAN22G0406 Fragaria x ananassa HOM05D007201 ORTHO05D009122 5.4e-66 255.8 386 43.0
CAN.G1591.3 Capsicum annuum HOM05D007201 ORTHO05D009122 7.1e-66 255.4 257 56.4
Glyma.11G109000 Glycine max HOM05D007201 ORTHO05D009122 9.3e-66 255.0 412 42.0
Glyma.12G016400 Glycine max HOM05D007201 ORTHO05D009122 2.7e-65 253.4 400 41.0
Lalb_Chr19g0140031 Lupinus albus HOM05D007201 ORTHO05D009122 7.9e-65 251.9 382 47.4
FAN12G1512 Fragaria x ananassa HOM05D007201 ORTHO05D009122 3.9e-64 249.6 275 51.6
SGA_v2.0_scaffold21G09583 Striga asiatica HOM05D007201 ORTHO05D009122 1.9e-63 247.3 452 45.6
THA.LOC104809224 Tarenaya hassleriana HOM05D007201 ORTHO05D009122 9.6e-63 245.0 403 46.2
Carub.0002s2218 Capsella rubella HOM05D007201 ORTHO05D009122 6.2e-62 242.3 405 39.5
HPP92_017373 Vanilla planifolia HOM05D007201 ORTHO05D009122 8.1e-62 241.9 398 41.7
CSS0037159 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.4e-61 241.1 321 45.5
AL2G35270 Arabidopsis lyrata HOM05D007201 ORTHO05D009122 3.1e-61 240.0 452 42.3
Aqoxy37s001 Aquilegia oxysepala HOM05D007201 ORTHO05D009122 1.5e-60 237.7 282 49.3
Nitab4.5_0004827g0030 Nicotiana tabacum HOM05D007201 ORTHO05D009122 1.7e-59 234.2 349 49.3
Thhalv10018711m.g Eutrema salsugineum HOM05D007201 ORTHO05D009122 2.2e-59 233.8 407 41.0
CDE04G0352 Ceratophyllum demersum HOM05D007201 ORTHO05D009122 2.4e-58 230.3 342 44.4
ATR0626G320 Amborella trichopoda HOM05D007201 ORTHO05D009122 5.5e-58 229.2 410 40.5
A07p40900 Brassica napus HOM05D007201 ORTHO05D009122 1.6e-57 227.6 420 41.7
CARHR068690 Cardamine hirsuta HOM05D007201 ORTHO05D009122 2.7e-57 226.9 443 41.8
CSS0027553 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 6.0e-57 225.7 280 48.9
EL10Ac2g03602 Beta vulgaris HOM05D007201 ORTHO05D009122 1.3e-56 224.6 456 38.2
C06p49330 Brassica napus HOM05D007201 ORTHO05D009122 1.3e-56 224.6 424 40.3
Medtr4g078160 Medicago truncatula HOM05D007201 ORTHO05D009122 2.3e-56 223.8 430 39.5
BraA07t31630Z Brassica rapa HOM05D007201 ORTHO05D009122 3.0e-56 223.4 424 41.0
Os06g0704300 Oryza sativa ssp. japonica HOM05D007201 ORTHO05D009122 2.1e-54 217.2 404 36.1
BcaC08g47362 Brassica carinata HOM05D007201 ORTHO05D009122 4.0e-53 213.0 415 41.0
BolC6t39968H Brassica oleracea HOM05D007201 ORTHO05D009122 6.9e-53 212.2 435 39.3
Aa31LG4G5550 Aethionema arabicum HOM05D007201 ORTHO05D009122 1.2e-52 211.5 269 46.1
SEGI_05170 Sequoiadendron giganteum HOM05D007201 ORTHO05D009122 1.2e-52 211.5 288 43.8
Sp5g30480 Schrenkiella parvula HOM05D007201 ORTHO05D009122 5.8e-52 209.1 454 36.6
Zm00001eb227240 Zea mays HOM05D007201 ORTHO05D009122 1.4e-50 204.5 403 34.2
AT1G75340 Arabidopsis thaliana HOM05D007201 ORTHO05D009122 6.0e-49 199.1 446 38.8
unitig_8.g3542 Utricularia gibba HOM05D007201 ORTHO05D009122 1.8e-48 197.6 384 40.6
AUR62027959 Chenopodium quinoa HOM05D007201 ORTHO05D009122 5.7e-47 192.6 212 50.9
Pp3c7_12210 Physcomitrium patens HOM05D007201 ORTHO05D009122 1.4e-32 144.8 424 30.4
Oeu000954.1 Olea europaea HOM05D007201 ORTHO05D009122 2.3e-32 144.1 249 41.0
FAN17G0247 Fragaria x ananassa HOM05D007201 ORTHO05D009122 3.9e-32 143.3 92 66.3
Migut.L01609 Erythranthe guttata HOM05D007201 ORTHO05D009122 1.7e-30 137.9 382 32.7
Gohir.A05G407400 Gossypium hirsutum HOM05D007201 ORTHO05D009122 1.4e-26 124.8 235 39.1
ClCG03G010480 Citrullus lanatus HOM05D007201 ORTHO05D009122 1.2e-25 121.7 211 39.8
Mapoly0005s0044 Marchantia polymorpha HOM05D007201 ORTHO05D009122 6.1e-25 119.4 427 33.5
AagrBONN_evm.TU.Sc2ySwM_117.2509 Anthoceros agrestis HOM05D007201 ORTHO05D009122 1.1e-18 98.6 325 36.3
CSS0006520 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 5.5e-18 96.3 67 65.7
CSS0048863 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 5.5e-18 96.3 67 65.7
CBR_g15955 Chara braunii HOM05D007201 ORTHO05D009122 3.3e-15 87.0 217 30.4
CSS0018491 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.3e-14 85.1 89 50.6
CSS0038290 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 2.7e-12 77.4 89 50.6
CSS0012149 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.9e-10 71.2 79 50.6
CSS0032596 Camellia sinensis var. sinensis HOM05D007201 ORTHO05D009122 1.9e-10 71.2 79 50.6
Sed0005629 Sechium edule HOM05D007201 ORTHO05D009122 4.2e-10 70.1 88 52.3
FAN17G2523 Fragaria x ananassa HOM05D007201 ORTHO05D009122 1.0e-08 65.5 60 51.7
Cre06.g254700 Chlamydomonas reinhardtii HOM05D007201 ORTHO05D009122 1.7e-06 58.2 72 36.1


User provided reference genes

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