Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G206900 Manihot esculenta HOM05D004820 ORTHO05D005946 1.1e-205 719.9 414 100.0
Atru.chr5.1456 Acer truncatum HOM05D004820 ORTHO05D005946 2.8e-177 625.5 420 83.6
Glyma.03G155000 Glycine max HOM05D004820 ORTHO05D005946 6.3e-177 624.4 415 84.1
Cpa.g.sc52.45 Carica papaya HOM05D004820 ORTHO05D005946 8.2e-177 624.0 422 86.0
Glyma.19G157200 Glycine max HOM05D004820 ORTHO05D005946 5.3e-176 621.3 412 83.5
Eucgr.K03365 Eucalyptus grandis HOM05D004820 ORTHO05D005946 2.6e-175 619.0 415 86.3
Potri.005G210600 Populus trichocarpa HOM05D004820 ORTHO05D005946 5.9e-175 617.8 419 85.9
VMungo1383G2933 Vigna mungo HOM05D004820 ORTHO05D005946 5.0e-174 614.8 414 83.8
TPR.G9917 Trifolium pratense HOM05D004820 ORTHO05D005946 6.5e-174 614.4 415 86.3
Thecc.01G277300 Theobroma cacao HOM05D004820 ORTHO05D005946 3.2e-173 612.1 417 86.6
CiPaw.08G106000 Carya illinoinensis HOM05D004820 ORTHO05D005946 1.2e-172 610.1 416 84.1
Sabra05G0160800 Salix brachista HOM05D004820 ORTHO05D005946 2.7e-172 609.0 425 85.2
Ca_08606_v3 Cicer arietinum L. HOM05D004820 ORTHO05D005946 7.9e-172 607.4 414 87.0
Ciclev10020348m.g Citrus clementina HOM05D004820 ORTHO05D005946 7.9e-172 607.4 417 83.0
Duzib138G0452 Durio zibethinus HOM05D004820 ORTHO05D005946 1.0e-171 607.1 417 82.7
Gohir.A08G066300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 3.0e-171 605.5 420 85.2
Gohir.D08G075000 Gossypium hirsutum HOM05D004820 ORTHO05D005946 6.7e-171 604.4 420 78.3
Gohir.A08G186300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 3.3e-170 602.1 417 83.0
Gohir.D08G204400 Gossypium hirsutum HOM05D004820 ORTHO05D005946 4.3e-170 601.7 417 83.0
Gorai.004G216400 Gossypium raimondii HOM05D004820 ORTHO05D005946 5.7e-170 601.3 417 83.0
TWI14G0518 Tripterygium wilfordii HOM05D004820 ORTHO05D005946 9.7e-170 600.5 413 80.1
Medtr7g095000 Medicago truncatula HOM05D004820 ORTHO05D005946 1.7e-169 599.7 414 85.3
Duzib211G0468 Durio zibethinus HOM05D004820 ORTHO05D005946 2.2e-169 599.4 417 86.3
CsaV3_7G028060 Cucumis sativus L. HOM05D004820 ORTHO05D005946 1.4e-168 596.7 422 83.4
CANSAT25G3765 Cannabis sativa HOM05D004820 ORTHO05D005946 2.4e-168 595.9 420 83.6
PGR044G0684 Punica granatum HOM05D004820 ORTHO05D005946 2.0e-167 592.8 416 85.6
arahy.Tifrunner.gnm1.ann1.HALK3W Arachis hypogaea HOM05D004820 ORTHO05D005946 2.6e-167 592.4 427 80.1
Nn4g26288 Nelumbo nucifera HOM05D004820 ORTHO05D005946 3.4e-167 592.0 423 80.6
arahy.Tifrunner.gnm1.ann1.JHLY8X Arachis hypogaea HOM05D004820 ORTHO05D005946 5.9e-167 591.3 427 79.9
TAR362G1079 Trochodendron aralioides HOM05D004820 ORTHO05D005946 7.7e-167 590.9 419 77.8
MELO3C015826.2 Cucumis melo HOM05D004820 ORTHO05D005946 3.8e-166 588.6 427 80.1
Phvul.005G035400 Phaseolus vulgaris HOM05D004820 ORTHO05D005946 3.8e-166 588.6 415 81.9
arahy.Tifrunner.gnm1.ann1.NQ54M2 Arachis hypogaea HOM05D004820 ORTHO05D005946 6.5e-166 587.8 427 79.9
Psat3g064000 Pisum sativum HOM05D004820 ORTHO05D005946 1.4e-165 586.6 414 84.5
Lalb_Chr06g0162971 Lupinus albus HOM05D004820 ORTHO05D005946 1.2e-164 583.6 415 81.0
Lj4g0024215 Lotus japonicus HOM05D004820 ORTHO05D005946 2.1e-164 582.8 414 79.2
THA.LOC104801242 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 5.1e-163 578.2 419 81.1
Gorai.004G079300 Gossypium raimondii HOM05D004820 ORTHO05D005946 6.7e-163 577.8 422 75.1
THA.LOC104815940 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 6.7e-163 577.8 418 78.9
arahy.Tifrunner.gnm1.ann1.X2D3U2 Arachis hypogaea HOM05D004820 ORTHO05D005946 1.5e-162 576.6 427 78.0
Oeu041704.1 Olea europaea HOM05D004820 ORTHO05D005946 2.6e-162 575.9 421 81.7
SGA_v2.0_scaffold81G26015 Striga asiatica HOM05D004820 ORTHO05D005946 4.4e-162 575.1 418 75.8
QL12p021397 Quercus lobata HOM05D004820 ORTHO05D005946 1.7e-161 573.2 415 77.1
MD11G1284100 Malus domestica HOM05D004820 ORTHO05D005946 2.2e-161 572.8 417 82.0
Solyc09g065280.4 Solanum lycopersicum HOM05D004820 ORTHO05D005946 7.0e-160 567.8 413 74.3
Cc03_g10020 Coffea canephora HOM05D004820 ORTHO05D005946 5.9e-159 564.7 415 78.6
CAN.G590.6 Capsicum annuum HOM05D004820 ORTHO05D005946 1.0e-158 563.9 414 72.9
MD03G1263300 Malus domestica HOM05D004820 ORTHO05D005946 6.5e-158 561.2 417 80.8
Sopen09g027030 Solanum pennellii HOM05D004820 ORTHO05D005946 1.1e-157 560.5 413 78.0
Actinidia00769 Actinidia chinensis HOM05D004820 ORTHO05D005946 3.2e-157 558.9 424 80.0
Sed0001544 Sechium edule HOM05D004820 ORTHO05D005946 3.2e-157 558.9 423 79.7
Migut.N02046 Erythranthe guttata HOM05D004820 ORTHO05D005946 5.5e-157 558.1 420 71.0
PGSC0003DMG400019362 Solanum tuberosum HOM05D004820 ORTHO05D005946 3.6e-156 555.4 413 76.3
MSTRG.17449 Avicennia marina HOM05D004820 ORTHO05D005946 3.0e-155 552.4 416 80.5
Sc05g0005630 Simmondsia chinensis HOM05D004820 ORTHO05D005946 1.1e-154 550.4 419 73.5
CSS0006431 Camellia sinensis var. sinensis HOM05D004820 ORTHO05D005946 2.2e-153 546.2 397 82.6
PSO210G1690 Papaver somniferum HOM05D004820 ORTHO05D005946 3.7e-153 545.4 411 78.1
HPP92_018354 Vanilla planifolia HOM05D004820 ORTHO05D005946 1.6e-151 540.0 422 76.8
Aa31LG1G9390 Aethionema arabicum HOM05D004820 ORTHO05D005946 2.0e-151 539.7 426 73.0
PSO761G0350 Papaver somniferum HOM05D004820 ORTHO05D005946 1.0e-150 537.3 411 73.5
AL1G12610 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 1.3e-150 537.0 422 72.5
Prupe.8G239700 Prunus persica HOM05D004820 ORTHO05D005946 1.3e-150 537.0 417 78.9
AUR62027118 Chenopodium quinoa HOM05D004820 ORTHO05D005946 1.4e-144 516.9 414 68.8
Lsat_1_v5_gn_5_187781 Lactuca sativa HOM05D004820 ORTHO05D005946 3.1e-144 515.8 399 74.4
A09p68340 Brassica napus HOM05D004820 ORTHO05D005946 2.0e-143 513.1 418 66.7
CARHR002470 Cardamine hirsuta HOM05D004820 ORTHO05D005946 2.0e-143 513.1 335 78.2
Carub.0001s0228 Capsella rubella HOM05D004820 ORTHO05D005946 3.5e-143 512.3 334 78.7
EL10Ac8g18597 Beta vulgaris HOM05D004820 ORTHO05D005946 5.0e-142 508.4 415 66.0
AUR62012894 Chenopodium quinoa HOM05D004820 ORTHO05D005946 1.5e-141 506.9 415 69.2
FvH4_2g23380 Fragaria vesca HOM05D004820 ORTHO05D005946 7.2e-141 504.6 418 73.2
FAN15G1635 Fragaria x ananassa HOM05D004820 ORTHO05D005946 2.1e-140 503.1 418 74.6
RcHm_v2.0_Chr6g0290841 Rosa chinensis HOM05D004820 ORTHO05D005946 2.7e-140 502.7 423 74.2
Ah.01g024010 Amaranthus hybridus HOM05D004820 ORTHO05D005946 4.7e-140 501.9 415 69.6
FAN20G0972 Fragaria x ananassa HOM05D004820 ORTHO05D005946 1.0e-139 500.7 423 69.5
C08p52910 Brassica napus HOM05D004820 ORTHO05D005946 2.3e-139 499.6 418 69.6
HanXRQChr01g0003021 Helianthus annuus HOM05D004820 ORTHO05D005946 6.8e-139 498.0 397 74.3
AT1G03140 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 8.8e-139 497.7 322 79.2
FAN27G0992 Fragaria x ananassa HOM05D004820 ORTHO05D005946 8.8e-139 497.7 427 73.3
BcaC07g42265 Brassica carinata HOM05D004820 ORTHO05D005946 2.0e-138 496.5 417 67.1
Thhalv10009621m.g Eutrema salsugineum HOM05D004820 ORTHO05D005946 5.7e-138 495.0 325 77.8
FAN24G1940 Fragaria x ananassa HOM05D004820 ORTHO05D005946 5.7e-138 495.0 436 70.4
BolC8t52807H Brassica oleracea HOM05D004820 ORTHO05D005946 7.5e-138 494.6 418 69.4
SEGI_11361 Sequoiadendron giganteum HOM05D004820 ORTHO05D005946 1.1e-136 490.7 412 68.0
QL03p020183 Quercus lobata HOM05D004820 ORTHO05D005946 2.4e-136 489.6 385 74.3
Sp1g02160 Schrenkiella parvula HOM05D004820 ORTHO05D005946 7.7e-135 484.6 325 76.9
A08p37470 Brassica napus HOM05D004820 ORTHO05D005946 3.8e-134 482.3 335 74.9
BraA08t35645Z Brassica rapa HOM05D004820 ORTHO05D005946 3.8e-134 482.3 335 74.9
BolC8t46841H Brassica oleracea HOM05D004820 ORTHO05D005946 6.6e-134 481.5 335 74.6
Mapoly0140s0012 Marchantia polymorpha HOM05D004820 ORTHO05D005946 9.5e-133 477.6 418 61.2
C08p00420 Brassica napus HOM05D004820 ORTHO05D005946 1.5e-130 470.3 417 66.9
ECA248G2754 Erigeron canadensis HOM05D004820 ORTHO05D005946 2.0e-130 469.9 391 68.5
Zm00001eb324990 Zea mays HOM05D004820 ORTHO05D005946 6.4e-129 464.9 441 63.5
Lj4g0011679 Lotus japonicus HOM05D004820 ORTHO05D005946 1.1e-128 464.2 398 70.6
Zm00001eb426860 Zea mays HOM05D004820 ORTHO05D005946 2.4e-128 463.0 408 62.3
Pp3c21_19780 Physcomitrium patens HOM05D004820 ORTHO05D005946 3.2e-128 462.6 417 59.7
AL1G45340 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 1.0e-126 457.6 419 62.5
Os07g0571900 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 1.1e-125 454.1 439 62.9
Zm00001eb426810 Zea mays HOM05D004820 ORTHO05D005946 1.5e-125 453.8 411 61.1
Zm00001eb426800 Zea mays HOM05D004820 ORTHO05D005946 5.6e-125 451.8 408 61.3
Zm00001eb426820 Zea mays HOM05D004820 ORTHO05D005946 1.2e-124 450.7 410 61.2
Zm00001eb426850 Zea mays HOM05D004820 ORTHO05D005946 4.4e-122 442.2 390 62.1
SMO356G0463 Selaginella moellendorffii HOM05D004820 ORTHO05D005946 5.2e-115 418.7 392 63.8
SpUn0083_0020 Schrenkiella parvula HOM05D004820 ORTHO05D005946 3.7e-113 412.5 374 60.4
Sp5g11480 Schrenkiella parvula HOM05D004820 ORTHO05D005946 2.1e-111 406.8 374 59.6
Lalb_Chr02g0142711 Lupinus albus HOM05D004820 ORTHO05D005946 1.3e-105 387.5 225 86.2
PGSC0003DMG400010602 Solanum tuberosum HOM05D004820 ORTHO05D005946 2.2e-105 386.7 424 53.5
COL.COLO4_09079 Corchorus olitorius HOM05D004820 ORTHO05D005946 3.8e-105 386.0 448 60.5
Zm00001eb216840 Zea mays HOM05D004820 ORTHO05D005946 6.0e-103 378.6 403 58.3
Rhsim01G0274100 Rhododendron simsii HOM05D004820 ORTHO05D005946 2.3e-102 376.7 290 70.3
PGSC0003DMG400010600 Solanum tuberosum HOM05D004820 ORTHO05D005946 2.2e-97 360.1 414 52.4
CBR_g23335 Chara braunii HOM05D004820 ORTHO05D005946 3.8e-97 359.4 442 55.0
AT1G54590 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 1.2e-90 337.8 294 65.0
Oeu028072.3 Olea europaea HOM05D004820 ORTHO05D005946 5.8e-90 335.5 282 79.4
Solyc07g052190.1 Solanum lycopersicum HOM05D004820 ORTHO05D005946 1.1e-85 321.2 270 62.6
SHI31236 Sapria himalayana HOM05D004820 ORTHO05D005946 1.4e-80 304.3 279 62.7
GSVIVG01001158001 Vitis vinifera HOM05D004820 ORTHO05D005946 7.9e-79 298.5 160 92.5
Sopen07g025700 Solanum pennellii HOM05D004820 ORTHO05D005946 2.1e-76 290.4 337 49.9
CAN.G198.19 Capsicum annuum HOM05D004820 ORTHO05D005946 5.3e-75 285.8 349 49.6
Zm00001eb426870 Zea mays HOM05D004820 ORTHO05D005946 3.4e-74 283.1 167 84.4
Sopen07g025830 Solanum pennellii HOM05D004820 ORTHO05D005946 1.9e-69 267.3 246 61.0
Cpa.g.sc52.46 Carica papaya HOM05D004820 ORTHO05D005946 1.7e-65 254.2 139 92.8
Solyc07g052050.2 Solanum lycopersicum HOM05D004820 ORTHO05D005946 5.3e-59 232.6 157 73.9
SHI31234 Sapria himalayana HOM05D004820 ORTHO05D005946 5.0e-57 226.1 128 88.3
HanXRQChr15g0487721 Helianthus annuus HOM05D004820 ORTHO05D005946 8.2e-52 208.8 162 65.4
Lj1g0027313 Lotus japonicus HOM05D004820 ORTHO05D005946 2.3e-46 190.7 159 62.9
Zm00001eb426830 Zea mays HOM05D004820 ORTHO05D005946 6.7e-46 189.1 115 83.5
Os03g0701100 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 3.7e-44 183.3 280 47.9
Sopen07g025690 Solanum pennellii HOM05D004820 ORTHO05D005946 1.8e-43 181.0 125 73.6
MCO06G052 Micromonas commoda HOM05D004820 ORTHO05D005946 2.5e-40 170.6 156 52.6
Sopen07g025610 Solanum pennellii HOM05D004820 ORTHO05D005946 1.2e-39 168.3 251 41.8
Cre13.g567750 Chlamydomonas reinhardtii HOM05D004820 ORTHO05D005946 4.1e-35 153.3 413 34.1
Gohir.D05G222300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 9.8e-29 132.1 64 98.4
Gohir.D11G242500 Gossypium hirsutum HOM05D004820 ORTHO05D005946 2.8e-28 130.6 64 96.9
Gorai.009G229700 Gossypium raimondii HOM05D004820 ORTHO05D005946 2.8e-28 130.6 64 96.9
CARHR182160 Cardamine hirsuta HOM05D004820 ORTHO05D005946 4.8e-28 129.8 116 60.3
BraA09t42170Z Brassica rapa HOM05D004820 ORTHO05D005946 1.4e-27 128.3 153 53.6
Gorai.011G187700 Gossypium raimondii HOM05D004820 ORTHO05D005946 1.4e-27 128.3 64 95.3
Nitab4.5_0003852g0050 Nicotiana tabacum HOM05D004820 ORTHO05D005946 5.0e-25 119.8 163 44.8
Zm00001eb078380 Zea mays HOM05D004820 ORTHO05D005946 1.6e-23 114.8 95 65.3
Zm00001eb180190 Zea mays HOM05D004820 ORTHO05D005946 1.6e-23 114.8 68 82.4
vmacro14915 Vaccinium macrocarpon HOM05D004820 ORTHO05D005946 2.1e-23 114.4 141 60.3
TAR365G1077 Trochodendron aralioides HOM05D004820 ORTHO05D005946 2.8e-23 114.0 97 61.9
Zm00001eb017440 Zea mays HOM05D004820 ORTHO05D005946 4.0e-22 110.2 66 80.3
Zm00001eb368520 Zea mays HOM05D004820 ORTHO05D005946 4.0e-22 110.2 68 79.4
Nitab4.5_0003327g0040 Nicotiana tabacum HOM05D004820 ORTHO05D005946 2.4e-19 100.9 155 42.6
Nn4g23784 Nelumbo nucifera HOM05D004820 ORTHO05D005946 3.5e-18 97.1 108 52.8
Dinv32923 Davidia involucrata HOM05D004820 ORTHO05D005946 1.2e-10 72.0 46 80.4
C06p09790 Brassica napus HOM05D004820 ORTHO05D001418 4.6e-10 70.1 69 53.6
BolC6t36051H Brassica oleracea HOM05D004820 ORTHO05D001418 4.6e-10 70.1 69 53.6
HanXRQChr11g0330911 Helianthus annuus HOM05D004820 ORTHO05D005946 8.9e-06 55.8 45 66.7


User provided reference genes

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