Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.01G063000 Manihot esculenta HOM05D004635 ORTHO05D005899 0.0e+00 1238.0 631 100.0
Duzib084G1397 Durio zibethinus HOM05D004635 ORTHO05D005899 2.3e-247 859.0 632 69.9
Potri.003G124700 Populus trichocarpa HOM05D004635 ORTHO05D005899 7.7e-243 844.0 633 68.6
Thecc.03G276500 Theobroma cacao HOM05D004635 ORTHO05D005899 1.3e-242 843.2 622 70.3
COL.COLO4_34438 Corchorus olitorius HOM05D004635 ORTHO05D005899 3.2e-241 838.6 629 68.7
Sabra03G0088200 Salix brachista HOM05D004635 ORTHO05D005899 1.4e-239 833.2 635 68.2
Gohir.A09G192700 Gossypium hirsutum HOM05D004635 ORTHO05D005899 8.2e-237 823.9 626 69.0
Gohir.D09G186900 Gossypium hirsutum HOM05D004635 ORTHO05D005899 9.1e-236 820.5 626 69.2
Ciclev10019281m.g Citrus clementina HOM05D004635 ORTHO05D005899 1.5e-235 819.7 628 66.7
Gorai.006G209700 Gossypium raimondii HOM05D004635 ORTHO05D005899 2.6e-235 818.9 626 68.8
Atru.chr9.2220 Acer truncatum HOM05D004635 ORTHO05D005899 5.5e-233 811.2 634 67.7
PGR042G2640 Punica granatum HOM05D004635 ORTHO05D005899 2.4e-228 795.8 624 66.2
Eucgr.E00572 Eucalyptus grandis HOM05D004635 ORTHO05D005899 5.3e-228 794.7 625 65.1
CsaV3_5G002950 Cucumis sativus L. HOM05D004635 ORTHO05D005899 1.3e-226 790.0 631 65.6
Actinidia02016 Actinidia chinensis HOM05D004635 ORTHO05D005899 1.7e-226 789.6 633 64.8
TWI81G1014 Tripterygium wilfordii HOM05D004635 ORTHO05D005899 2.9e-226 788.9 629 65.8
Dinv38955 Davidia involucrata HOM05D004635 ORTHO05D005899 5.0e-226 788.1 627 65.7
MELO3C005661.2 Cucumis melo HOM05D004635 ORTHO05D005899 2.5e-225 785.8 630 64.9
RcHm_v2.0_Chr7g0211871 Rosa chinensis HOM05D004635 ORTHO05D005899 1.4e-220 770.0 631 64.2
Cpa.g.sc202.13 Carica papaya HOM05D004635 ORTHO05D005899 2.0e-219 766.1 630 64.9
Prupe.5G097400 Prunus persica HOM05D004635 ORTHO05D005899 2.9e-218 762.3 627 64.6
ClCG01G002860 Citrullus lanatus HOM05D004635 ORTHO05D005899 6.5e-218 761.1 625 64.3
Haze_08871 Corylus avellana HOM05D004635 ORTHO05D005899 2.5e-217 759.2 626 64.9
TAR636G1354 Trochodendron aralioides HOM05D004635 ORTHO05D005899 4.2e-217 758.4 630 63.7
Phvul.002G288000 Phaseolus vulgaris HOM05D004635 ORTHO05D005899 1.6e-216 756.5 636 61.6
Glyma.08G013300 Glycine max HOM05D004635 ORTHO05D005899 1.4e-215 753.4 639 62.4
MD14G1101800 Malus domestica HOM05D004635 ORTHO05D005899 1.4e-215 753.4 621 63.8
Cfa012156 Carpinus fangiana HOM05D004635 ORTHO05D005899 1.8e-215 753.1 621 64.6
CSS0019840 Camellia sinensis var. sinensis HOM05D004635 ORTHO05D005899 2.3e-215 752.7 631 62.9
QL01p003129 Quercus lobata HOM05D004635 ORTHO05D005899 2.3e-215 752.7 631 65.3
vmacro11312 Vaccinium macrocarpon HOM05D004635 ORTHO05D005899 5.2e-215 751.5 613 65.4
THA.LOC104818064 Tarenaya hassleriana HOM05D004635 ORTHO05D005899 1.5e-214 750.0 630 63.0
VMungo0251G2718 Vigna mungo HOM05D004635 ORTHO05D005899 2.6e-214 749.2 636 61.2
Hma1.2p1_0377F.1_g139240 Hydrangea macrophylla HOM05D004635 ORTHO05D005899 1.7e-213 746.5 622 63.7
TPR.G12861 Trifolium pratense HOM05D004635 ORTHO05D005899 1.7e-213 746.5 624 61.7
Lj6A677T80 Lonicera japonica HOM05D004635 ORTHO05D005899 1.4e-212 743.4 651 61.1
Medtr8g098490 Medicago truncatula HOM05D004635 ORTHO05D005899 5.4e-212 741.5 629 62.2
arahy.Tifrunner.gnm1.ann1.NB74KP Arachis hypogaea HOM05D004635 ORTHO05D005899 3.5e-211 738.8 627 62.0
FAN18G0535 Fragaria x ananassa HOM05D004635 ORTHO05D005899 6.6e-210 734.6 633 62.1
arahy.Tifrunner.gnm1.ann1.Y4HLQF Arachis hypogaea HOM05D004635 ORTHO05D005899 1.5e-209 733.4 621 62.6
Aqoxy5G04278 Aquilegia oxysepala HOM05D004635 ORTHO05D005899 5.5e-209 731.5 632 63.1
FAN18G1690 Fragaria x ananassa HOM05D004635 ORTHO05D005899 9.5e-209 730.7 633 61.9
Nitab4.5_0003907g0020 Nicotiana tabacum HOM05D004635 ORTHO05D005899 1.2e-208 730.3 596 64.1
Aa31LG9G660 Aethionema arabicum HOM05D004635 ORTHO05D005899 2.1e-208 729.6 633 62.7
TAR629G3080 Trochodendron aralioides HOM05D004635 ORTHO05D005899 2.8e-208 729.2 611 63.2
FvH4_5g23090 Fragaria vesca HOM05D004635 ORTHO05D005899 3.6e-208 728.8 633 61.8
Ca_17544_v3 Cicer arietinum L. HOM05D004635 ORTHO05D005899 6.1e-208 728.0 629 60.4
FAN04G0694 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.8e-207 726.5 634 62.0
FAN13G3179 Fragaria x ananassa HOM05D004635 ORTHO05D005899 1.8e-207 726.5 631 62.0
arahy.Tifrunner.gnm1.ann1.BGY2GF Arachis hypogaea HOM05D004635 ORTHO05D005899 6.8e-207 724.5 634 61.7
Lalb_Chr05g0224871 Lupinus albus HOM05D004635 ORTHO05D005899 1.2e-206 723.8 629 62.5
Nn5g27546 Nelumbo nucifera HOM05D004635 ORTHO05D005899 2.0e-206 723.0 621 62.0
Carub.0007s3429 Capsella rubella HOM05D004635 ORTHO05D005899 3.4e-206 722.2 625 61.1
Lj4g0017456 Lotus japonicus HOM05D004635 ORTHO05D005899 5.7e-206 721.5 630 60.6
Nn1g02763 Nelumbo nucifera HOM05D004635 ORTHO05D005899 5.7e-206 721.5 627 61.4
Psat7g034520 Pisum sativum HOM05D004635 ORTHO05D005899 9.8e-206 720.7 598 63.7
MBI18_g19087_MAGBIO Magnolia biondii HOM05D004635 ORTHO05D005899 2.2e-205 719.5 641 60.4
CANSAT78G0227 Cannabis sativa HOM05D004635 ORTHO05D005899 3.7e-205 718.8 626 62.5
AL7G48240 Arabidopsis lyrata HOM05D004635 ORTHO05D005899 1.4e-204 716.8 629 61.5
SGA_v2.0_scaffold146G36254 Striga asiatica HOM05D004635 ORTHO05D005899 1.4e-204 716.8 635 60.3
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 1.2e-203 713.8 599 62.1
PGSC0003DMG400029793 Solanum tuberosum HOM05D004635 ORTHO05D005899 1.6e-203 713.4 607 61.8
arahy.Tifrunner.gnm1.ann1.MF5MQE Arachis hypogaea HOM05D004635 ORTHO05D005899 2.0e-203 713.0 625 61.0
Nitab4.5_0004836g0050 Nicotiana tabacum HOM05D004635 ORTHO05D005899 2.7e-203 712.6 617 60.9
Cc08_g14490 Coffea canephora HOM05D004635 ORTHO05D005899 4.5e-203 711.8 641 59.8
AT5G41190 Arabidopsis thaliana HOM05D004635 ORTHO05D005899 7.8e-203 711.1 628 59.9
ECA240G4094 Erigeron canadensis HOM05D004635 ORTHO05D005899 5.0e-202 708.4 639 59.6
Peaxi162Scf00102g01512 Petunia axillaris HOM05D004635 ORTHO05D005899 5.0e-202 708.4 627 60.9
PSO170G0760 Papaver somniferum HOM05D004635 ORTHO05D005899 3.3e-201 705.7 629 60.3
PSO017G3139 Papaver somniferum HOM05D004635 ORTHO05D005899 5.6e-201 704.9 629 60.3
DCAR_000603 Daucus carota HOM05D004635 ORTHO05D005899 2.8e-200 702.6 622 60.1
GSVIVG01019776001 Vitis vinifera HOM05D004635 ORTHO05D005899 8.0e-200 701.0 626 60.2
PSO384G0809 Papaver somniferum HOM05D004635 ORTHO05D005899 1.4e-199 700.3 633 60.0
PSO339G4625 Papaver somniferum HOM05D004635 ORTHO05D005899 1.5e-198 696.8 636 59.9
Sp7g00720 Schrenkiella parvula HOM05D004635 ORTHO05D005899 1.3e-197 693.7 624 60.3
SpUn0010_0200 Schrenkiella parvula HOM05D004635 ORTHO05D005899 1.3e-197 693.7 624 60.3
AUR62017259 Chenopodium quinoa HOM05D004635 ORTHO05D005899 1.9e-196 689.9 627 59.5
AUR62010616 Chenopodium quinoa HOM05D004635 ORTHO05D005899 2.4e-196 689.5 637 58.2
Sed0015372 Sechium edule HOM05D004635 ORTHO05D005899 7.0e-196 688.0 623 59.9
Hund11485 Selenicereus undatus HOM05D004635 ORTHO05D005899 9.2e-196 687.6 643 58.9
Solyc08g007990.3 Solanum lycopersicum HOM05D004635 ORTHO05D005899 9.2e-196 687.6 607 60.1
MSTRG.13840 Avicennia marina HOM05D004635 ORTHO05D005899 2.0e-195 686.4 639 57.9
Sopen08g003860 Solanum pennellii HOM05D004635 ORTHO05D005899 2.7e-195 686.0 607 59.8
Lsat_1_v5_gn_6_87181 Lactuca sativa HOM05D004635 ORTHO05D005899 1.3e-194 683.7 629 58.8
HanXRQChr13g0416481 Helianthus annuus HOM05D004635 ORTHO05D005899 3.0e-194 682.6 629 60.1
Thhalv10027696m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 3.3e-193 679.1 631 59.9
PGSC0003DMG400005819 Solanum tuberosum HOM05D004635 ORTHO05D005899 4.3e-193 678.7 607 59.3
SalBow6G1328 Salvia bowleyana HOM05D004635 ORTHO05D005899 4.7e-192 675.2 625 58.1
EL10Ac5g12781 Beta vulgaris HOM05D004635 ORTHO05D005899 8.0e-192 674.5 626 60.5
EL10Ac1g00317 Beta vulgaris HOM05D004635 ORTHO05D005899 4.4e-190 668.7 631 60.1
BcaB06g27604 Brassica carinata HOM05D004635 ORTHO05D005899 7.5e-190 667.9 624 57.7
C04p48290 Brassica napus HOM05D004635 ORTHO05D005899 9.8e-190 667.5 627 58.1
BcaC02g08976 Brassica carinata HOM05D004635 ORTHO05D005899 2.2e-189 666.4 627 58.1
BolC4t26422H Brassica oleracea HOM05D004635 ORTHO05D005899 2.2e-189 666.4 627 58.1
A07p20710 Brassica napus HOM05D004635 ORTHO05D005899 2.9e-189 666.0 630 58.3
RcHm_v2.0_Chr7g0179141 Rosa chinensis HOM05D004635 ORTHO05D005899 4.6e-187 658.7 624 57.7
A04p14360 Brassica napus HOM05D004635 ORTHO05D005899 5.1e-186 655.2 627 57.3
BraA04t17085Z Brassica rapa HOM05D004635 ORTHO05D005899 1.1e-185 654.1 627 57.1
BraA07t29762Z Brassica rapa HOM05D004635 ORTHO05D005899 7.3e-185 651.4 627 57.1
FAN08G3353 Fragaria x ananassa HOM05D004635 ORTHO05D005899 4.7e-184 648.7 564 62.9
ATR0064G111 Amborella trichopoda HOM05D004635 ORTHO05D005899 1.6e-179 633.6 620 56.6
Sed0018462 Sechium edule HOM05D004635 ORTHO05D005899 4.6e-179 632.1 523 63.9
CARHR213190 Cardamine hirsuta HOM05D004635 ORTHO05D005899 1.8e-175 620.2 625 55.8
CiPaw.11G137400 Carya illinoinensis HOM05D004635 ORTHO05D005899 1.7e-173 613.6 536 60.6
Glyma.05G206400 Glycine max HOM05D004635 ORTHO05D005899 7.8e-171 604.7 551 59.2
BcaB02g07904 Brassica carinata HOM05D004635 ORTHO05D005899 1.6e-168 597.0 625 53.4
HPP92_020857 Vanilla planifolia HOM05D004635 ORTHO05D005899 1.0e-162 577.8 641 51.3
Oeu011058.1 Olea europaea HOM05D004635 ORTHO05D005899 2.1e-152 543.5 632 49.4
Os02g0114700 Oryza sativa ssp. japonica HOM05D004635 ORTHO05D005899 9.0e-151 538.1 593 50.6
BcaC08g44516 Brassica carinata HOM05D004635 ORTHO05D005899 1.5e-150 537.3 626 49.5
Thhalv10009994m.g Eutrema salsugineum HOM05D004635 ORTHO05D005899 1.2e-147 527.7 637 49.5
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 1.6e-147 527.3 643 48.4
Actinidia14552 Actinidia chinensis HOM05D004635 ORTHO05D005899 7.9e-147 525.0 634 50.6
SEGI_23350 Sequoiadendron giganteum HOM05D004635 ORTHO05D005899 3.3e-145 519.6 636 46.4
CDE06G0591 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 6.2e-144 515.4 532 53.2
Zm00001eb209610 Zea mays HOM05D004635 ORTHO05D005899 6.2e-144 515.4 621 47.8
Sc01g0009470 Simmondsia chinensis HOM05D004635 ORTHO05D005899 1.3e-125 454.5 480 54.6
Zm00001eb229850 Zea mays HOM05D004635 ORTHO05D005899 4.4e-121 439.5 522 49.6
Carub.0004s0410 Capsella rubella HOM05D004635 ORTHO05D005899 2.4e-119 433.7 533 48.6
RcHm_v2.0_Chr7g0211921 Rosa chinensis HOM05D004635 ORTHO05D005899 3.1e-119 433.3 402 60.4
RcHm_v2.0_Chr2g0099081 Rosa chinensis HOM05D004635 ORTHO05D005899 3.1e-111 406.8 541 46.6
Migut.A00784 Erythranthe guttata HOM05D004635 ORTHO05D005899 1.1e-108 398.3 445 53.3
Dinv37658 Davidia involucrata HOM05D004635 ORTHO05D005899 2.5e-108 397.1 338 63.9
C06p19650 Brassica napus HOM05D004635 ORTHO05D005899 2.1e-107 394.0 434 52.1
Pp3c2_34320 Physcomitrium patens HOM05D004635 ORTHO05D005899 4.7e-107 392.9 660 40.2
AagrBONN_evm.TU.Sc2ySwM_362.355 Anthoceros agrestis HOM05D004635 ORTHO05D005899 1.5e-97 361.3 630 37.9
BolC6t37157H Brassica oleracea HOM05D004635 ORTHO05D005899 2.0e-89 334.3 288 61.1
FAN26G1714 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.2e-88 330.9 373 52.8
FAN28G2416 Fragaria x ananassa HOM05D004635 ORTHO05D005899 2.2e-88 330.9 373 52.8
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 7.8e-86 322.4 449 44.1
Dinv37657 Davidia involucrata HOM05D004635 ORTHO05D005899 2.5e-84 317.4 251 64.5
SMO171G0086 Selaginella moellendorffii HOM05D004635 ORTHO05D005899 1.3e-80 305.1 595 34.8
BolC6t37158H Brassica oleracea HOM05D004635 ORTHO05D005899 5.0e-77 293.1 242 61.2
Mapoly0033s0014 Marchantia polymorpha HOM05D004635 ORTHO05D005899 2.9e-72 277.3 570 36.5
BcaC04g18687 Brassica carinata HOM05D004635 ORTHO05D005899 1.9e-68 264.6 374 46.5
BolC9t58686H Brassica oleracea HOM05D004635 ORTHO05D005899 2.1e-67 261.2 374 46.0
C09p58220 Brassica napus HOM05D000111 ORTHO05D000134 1.2e-65 255.4 374 46.0
BcaC08g44514 Brassica carinata HOM05D004635 ORTHO05D005899 1.7e-64 251.5 148 75.7
RcHm_v2.0_Chr7g0211961 Rosa chinensis HOM05D004635 ORTHO05D005899 1.0e-61 242.3 199 62.3
CBR_g50931 Chara braunii HOM05D004635 ORTHO05D005899 1.4e-58 231.9 791 27.3
QL12p018319 Quercus lobata HOM05D004635 ORTHO05D005899 1.6e-46 191.8 353 38.2
C06p19660 Brassica napus HOM05D004635 ORTHO05D005899 7.3e-44 183.0 154 61.7
VMungo1127G2192 Vigna mungo HOM05D004635 ORTHO05D005899 4.5e-41 173.7 179 49.2
PRCOL_00006831 Prasinoderma coloniale HOM05D004635 ORTHO05D005899 7.1e-39 166.4 589 28.7
MCO14G249 Micromonas commoda HOM05D004635 ORTHO05D005899 2.7e-38 164.5 556 27.7
Cre01.g031750 Chlamydomonas reinhardtii HOM05D004635 ORTHO05D005899 1.4e-34 152.1 526 28.7
BcaC08g44517 Brassica carinata HOM05D004635 ORTHO05D005899 1.1e-31 142.5 273 39.2
EL10Ac8g19215 Beta vulgaris HOM05D000238 ORTHO05D001043 2.7e-22 111.3 83 67.5
Solyc12g015770.3 Solanum lycopersicum HOM05D000074 ORTHO05D001262 8.7e-21 106.3 60 81.7
Lj2C188G12 Lonicera japonica HOM05D004635 ORTHO05D005899 5.3e-18 97.1 178 38.2
Lj2C188G13 Lonicera japonica HOM05D004635 ORTHO05D005899 7.4e-12 76.6 79 53.2
EL10Ac5g10794 Beta vulgaris HOM05D004635 ORTHO05D005899 3.7e-11 74.3 91 56.0
Sopen12g007660 Solanum pennellii HOM05D000006 ORTHO05D000695 7.7e-09 66.6 40 77.5
arahy.Tifrunner.gnm1.ann1.CCN99U Arachis hypogaea HOM05D004635 ORTHO05D085572 5.0e-08 63.9 45 68.9
AL4G15290 Arabidopsis lyrata HOM05D004635 ORTHO05D079484 8.5e-08 63.2 66 53.0


User provided reference genes

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