Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.17449 Avicennia marina HOM05D004820 ORTHO05D005946 1.2e-196 689.9 417 100.0
SGA_v2.0_scaffold81G26015 Striga asiatica HOM05D004820 ORTHO05D005946 2.7e-172 609.0 416 80.0
Oeu041704.1 Olea europaea HOM05D004820 ORTHO05D005946 1.8e-168 596.3 418 85.9
Migut.N02046 Erythranthe guttata HOM05D004820 ORTHO05D005946 9.1e-168 594.0 418 75.8
CAN.G590.6 Capsicum annuum HOM05D004820 ORTHO05D005946 4.2e-165 585.1 414 74.9
Solyc09g065280.4 Solanum lycopersicum HOM05D004820 ORTHO05D005946 7.2e-165 584.3 413 75.8
Sopen09g027030 Solanum pennellii HOM05D004820 ORTHO05D005946 7.2e-165 584.3 413 80.4
Cc03_g10020 Coffea canephora HOM05D004820 ORTHO05D005946 2.1e-164 582.8 414 80.9
PGSC0003DMG400019362 Solanum tuberosum HOM05D004820 ORTHO05D005946 5.2e-163 578.2 413 78.7
Nn4g26288 Nelumbo nucifera HOM05D004820 ORTHO05D005946 5.4e-160 568.2 421 77.9
Actinidia00769 Actinidia chinensis HOM05D004820 ORTHO05D005946 5.9e-159 564.7 421 82.9
CSS0006431 Camellia sinensis var. sinensis HOM05D004820 ORTHO05D005946 1.7e-158 563.1 392 86.2
Duzib138G0452 Durio zibethinus HOM05D004820 ORTHO05D005946 2.9e-158 562.4 416 78.1
Eucgr.K03365 Eucalyptus grandis HOM05D004820 ORTHO05D005946 5.0e-158 561.6 412 83.0
Gorai.004G216400 Gossypium raimondii HOM05D004820 ORTHO05D005946 9.5e-157 557.4 417 79.9
Manes.01G206900 Manihot esculenta HOM05D004820 ORTHO05D005946 9.5e-157 557.4 416 80.5
Thecc.01G277300 Theobroma cacao HOM05D004820 ORTHO05D005946 9.5e-157 557.4 416 81.0
Duzib211G0468 Durio zibethinus HOM05D004820 ORTHO05D005946 2.1e-156 556.2 416 83.4
Gohir.A08G186300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 2.8e-156 555.8 417 79.6
Gohir.D08G204400 Gossypium hirsutum HOM05D004820 ORTHO05D005946 3.6e-156 555.4 417 79.6
Cpa.g.sc52.45 Carica papaya HOM05D004820 ORTHO05D005946 6.1e-156 554.7 421 79.8
Ciclev10020348m.g Citrus clementina HOM05D004820 ORTHO05D005946 1.0e-155 553.9 416 79.6
Gohir.A08G066300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.0e-155 553.9 419 80.2
Glyma.19G157200 Glycine max HOM05D004820 ORTHO05D005946 1.8e-155 553.1 415 75.4
Sc05g0005630 Simmondsia chinensis HOM05D004820 ORTHO05D005946 2.3e-155 552.7 421 73.2
Gohir.D08G075000 Gossypium hirsutum HOM05D004820 ORTHO05D005946 3.0e-155 552.4 419 72.6
VMungo1383G2933 Vigna mungo HOM05D004820 ORTHO05D005946 3.0e-155 552.4 414 76.8
Glyma.03G155000 Glycine max HOM05D004820 ORTHO05D005946 5.2e-155 551.6 416 76.2
TWI14G0518 Tripterygium wilfordii HOM05D004820 ORTHO05D005946 2.6e-154 549.3 416 75.5
Atru.chr5.1456 Acer truncatum HOM05D004820 ORTHO05D005946 1.3e-153 547.0 420 75.2
TPR.G9917 Trifolium pratense HOM05D004820 ORTHO05D005946 2.2e-153 546.2 416 78.6
TAR362G1079 Trochodendron aralioides HOM05D004820 ORTHO05D005946 2.9e-153 545.8 419 74.7
CiPaw.08G106000 Carya illinoinensis HOM05D004820 ORTHO05D005946 3.7e-153 545.4 417 77.0
Ca_08606_v3 Cicer arietinum L. HOM05D004820 ORTHO05D005946 4.9e-153 545.0 415 80.7
PGR044G0684 Punica granatum HOM05D004820 ORTHO05D005946 6.4e-153 544.7 416 82.2
CANSAT25G3765 Cannabis sativa HOM05D004820 ORTHO05D005946 1.1e-152 543.9 419 77.1
Medtr7g095000 Medicago truncatula HOM05D004820 ORTHO05D005946 1.2e-151 540.4 415 80.5
CsaV3_7G028060 Cucumis sativus L. HOM05D004820 ORTHO05D005946 3.5e-151 538.9 420 79.3
MELO3C015826.2 Cucumis melo HOM05D004820 ORTHO05D005946 5.9e-151 538.1 425 77.4
Phvul.005G035400 Phaseolus vulgaris HOM05D004820 ORTHO05D005946 2.5e-149 532.7 415 76.6
MD03G1263300 Malus domestica HOM05D004820 ORTHO05D005946 4.3e-149 531.9 416 79.1
Potri.005G210600 Populus trichocarpa HOM05D004820 ORTHO05D005946 4.3e-149 531.9 419 77.8
THA.LOC104801242 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 4.3e-149 531.9 418 76.1
Psat3g064000 Pisum sativum HOM05D004820 ORTHO05D005946 7.3e-149 531.2 415 80.5
Gorai.004G079300 Gossypium raimondii HOM05D004820 ORTHO05D005946 9.5e-149 530.8 421 69.8
THA.LOC104815940 Tarenaya hassleriana HOM05D004820 ORTHO05D005946 1.2e-148 530.4 419 74.5
Lsat_1_v5_gn_5_187781 Lactuca sativa HOM05D004820 ORTHO05D005946 8.0e-148 527.7 397 77.6
MD11G1284100 Malus domestica HOM05D004820 ORTHO05D005946 8.0e-148 527.7 416 76.7
arahy.Tifrunner.gnm1.ann1.HALK3W Arachis hypogaea HOM05D004820 ORTHO05D005946 2.3e-147 526.2 426 73.9
arahy.Tifrunner.gnm1.ann1.JHLY8X Arachis hypogaea HOM05D004820 ORTHO05D005946 5.2e-147 525.0 426 73.7
arahy.Tifrunner.gnm1.ann1.NQ54M2 Arachis hypogaea HOM05D004820 ORTHO05D005946 5.2e-147 525.0 426 73.9
Lj4g0024215 Lotus japonicus HOM05D004820 ORTHO05D005946 6.8e-147 524.6 414 73.4
Lalb_Chr06g0162971 Lupinus albus HOM05D004820 ORTHO05D005946 1.2e-146 523.9 416 75.2
Sed0001544 Sechium edule HOM05D004820 ORTHO05D005946 2.0e-146 523.1 421 78.9
Sabra05G0160800 Salix brachista HOM05D004820 ORTHO05D005946 4.4e-146 521.9 425 77.2
QL12p021397 Quercus lobata HOM05D004820 ORTHO05D005946 1.7e-145 520.0 417 72.2
arahy.Tifrunner.gnm1.ann1.X2D3U2 Arachis hypogaea HOM05D004820 ORTHO05D005946 5.4e-144 515.0 426 73.5
PSO210G1690 Papaver somniferum HOM05D004820 ORTHO05D005946 9.2e-144 514.2 415 74.7
Aa31LG1G9390 Aethionema arabicum HOM05D004820 ORTHO05D005946 7.8e-143 511.1 425 70.6
HanXRQChr01g0003021 Helianthus annuus HOM05D004820 ORTHO05D005946 3.0e-142 509.2 395 77.7
HPP92_018354 Vanilla planifolia HOM05D004820 ORTHO05D005946 4.3e-141 505.4 422 73.7
Prupe.8G239700 Prunus persica HOM05D004820 ORTHO05D005946 3.6e-140 502.3 417 77.2
PSO761G0350 Papaver somniferum HOM05D004820 ORTHO05D005946 4.7e-140 501.9 421 68.4
AUR62027118 Chenopodium quinoa HOM05D004820 ORTHO05D005946 1.1e-139 500.7 423 68.1
AUR62012894 Chenopodium quinoa HOM05D004820 ORTHO05D005946 3.1e-139 499.2 419 70.6
AL1G12610 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 3.7e-137 492.3 423 69.5
EL10Ac8g18597 Beta vulgaris HOM05D004820 ORTHO05D005946 3.2e-136 489.2 420 65.2
A09p68340 Brassica napus HOM05D004820 ORTHO05D005946 6.0e-135 485.0 419 65.4
Ah.01g024010 Amaranthus hybridus HOM05D004820 ORTHO05D005946 9.5e-133 477.6 414 67.1
C08p52910 Brassica napus HOM05D004820 ORTHO05D005946 9.5e-133 477.6 418 69.1
BcaC07g42265 Brassica carinata HOM05D004820 ORTHO05D005946 1.6e-132 476.9 415 64.8
ECA248G2754 Erigeron canadensis HOM05D004820 ORTHO05D005946 2.1e-132 476.5 420 67.9
CARHR002470 Cardamine hirsuta HOM05D004820 ORTHO05D005946 3.1e-131 472.6 332 75.0
BolC8t52807H Brassica oleracea HOM05D004820 ORTHO05D005946 5.2e-131 471.9 418 68.7
Carub.0001s0228 Capsella rubella HOM05D004820 ORTHO05D005946 6.8e-131 471.5 333 75.1
FvH4_2g23380 Fragaria vesca HOM05D004820 ORTHO05D005946 3.4e-130 469.2 418 70.1
Zm00001eb324990 Zea mays HOM05D004820 ORTHO05D005946 4.4e-130 468.8 441 64.4
FAN15G1635 Fragaria x ananassa HOM05D004820 ORTHO05D005946 1.7e-129 466.8 418 72.7
QL03p020183 Quercus lobata HOM05D004820 ORTHO05D005946 4.9e-129 465.3 386 71.8
FAN20G0972 Fragaria x ananassa HOM05D004820 ORTHO05D005946 6.4e-129 464.9 418 67.5
RcHm_v2.0_Chr6g0290841 Rosa chinensis HOM05D004820 ORTHO05D005946 1.9e-128 463.4 423 71.2
Thhalv10009621m.g Eutrema salsugineum HOM05D004820 ORTHO05D005946 3.2e-128 462.6 325 75.7
Zm00001eb426860 Zea mays HOM05D004820 ORTHO05D005946 7.1e-128 461.5 412 61.9
FAN27G0992 Fragaria x ananassa HOM05D004820 ORTHO05D005946 1.2e-127 460.7 427 70.7
SEGI_11361 Sequoiadendron giganteum HOM05D004820 ORTHO05D005946 1.6e-127 460.3 415 65.1
A08p37470 Brassica napus HOM05D004820 ORTHO05D005946 7.8e-127 458.0 334 75.7
BraA08t35645Z Brassica rapa HOM05D004820 ORTHO05D005946 7.8e-127 458.0 334 75.7
FAN24G1940 Fragaria x ananassa HOM05D004820 ORTHO05D005946 3.0e-126 456.1 436 67.0
AT1G03140 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 5.1e-126 455.3 323 74.9
Zm00001eb426810 Zea mays HOM05D004820 ORTHO05D005946 8.6e-126 454.5 421 60.1
BolC8t46841H Brassica oleracea HOM05D004820 ORTHO05D005946 1.5e-125 453.8 420 68.6
Zm00001eb426820 Zea mays HOM05D004820 ORTHO05D005946 2.5e-125 453.0 421 60.6
C08p00420 Brassica napus HOM05D004820 ORTHO05D005946 3.3e-125 452.6 332 74.7
Zm00001eb426800 Zea mays HOM05D004820 ORTHO05D005946 1.6e-124 450.3 412 60.4
Sp1g02160 Schrenkiella parvula HOM05D004820 ORTHO05D005946 2.8e-124 449.5 325 74.5
Os07g0571900 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 1.8e-123 446.8 439 64.0
Mapoly0140s0012 Marchantia polymorpha HOM05D004820 ORTHO05D005946 1.2e-122 444.1 421 58.4
Zm00001eb426850 Zea mays HOM05D004820 ORTHO05D005946 1.1e-120 437.6 391 60.9
Pp3c21_19780 Physcomitrium patens HOM05D004820 ORTHO05D005946 1.2e-119 434.1 422 58.1
Lj4g0011679 Lotus japonicus HOM05D004820 ORTHO05D005946 1.1e-117 427.6 398 64.3
AL1G45340 Arabidopsis lyrata HOM05D004820 ORTHO05D005946 3.6e-116 422.5 417 59.2
SMO356G0463 Selaginella moellendorffii HOM05D004820 ORTHO05D005946 3.3e-109 399.4 406 60.8
SpUn0083_0020 Schrenkiella parvula HOM05D004820 ORTHO05D005946 6.2e-108 395.2 375 57.6
PGSC0003DMG400010602 Solanum tuberosum HOM05D004820 ORTHO05D005946 4.0e-107 392.5 411 54.5
Sp5g11480 Schrenkiella parvula HOM05D004820 ORTHO05D005946 5.3e-107 392.1 375 57.1
PGSC0003DMG400010600 Solanum tuberosum HOM05D004820 ORTHO05D005946 3.0e-102 376.3 316 66.1
Rhsim01G0274100 Rhododendron simsii HOM05D004820 ORTHO05D005946 6.7e-102 375.2 290 72.4
Zm00001eb216840 Zea mays HOM05D004820 ORTHO05D005946 1.3e-100 370.9 414 57.0
Oeu028072.3 Olea europaea HOM05D004820 ORTHO05D005946 2.1e-100 370.2 281 86.5
Lalb_Chr02g0142711 Lupinus albus HOM05D004820 ORTHO05D005946 5.3e-99 365.5 220 83.2
COL.COLO4_09079 Corchorus olitorius HOM05D004820 ORTHO05D005946 3.4e-98 362.8 445 57.1
CBR_g23335 Chara braunii HOM05D004820 ORTHO05D005946 1.8e-94 350.5 442 56.8
AT1G54590 Arabidopsis thaliana HOM05D004820 ORTHO05D005946 1.4e-88 330.9 293 63.5
Solyc07g052190.1 Solanum lycopersicum HOM05D004820 ORTHO05D005946 1.5e-85 320.9 271 63.1
CAN.G198.19 Capsicum annuum HOM05D004820 ORTHO05D005946 4.2e-80 302.8 350 51.4
Sopen07g025700 Solanum pennellii HOM05D004820 ORTHO05D005946 2.2e-76 290.4 338 50.3
Zm00001eb426870 Zea mays HOM05D004820 ORTHO05D005946 7.7e-74 282.0 167 85.0
SHI31236 Sapria himalayana HOM05D004820 ORTHO05D005946 1.3e-73 281.2 279 57.3
GSVIVG01001158001 Vitis vinifera HOM05D004820 ORTHO05D005946 9.4e-72 275.0 158 88.6
Sopen07g025830 Solanum pennellii HOM05D004820 ORTHO05D005946 1.0e-70 271.6 238 63.0
Cpa.g.sc52.46 Carica papaya HOM05D004820 ORTHO05D005946 7.0e-59 232.3 137 86.9
Solyc07g052050.2 Solanum lycopersicum HOM05D004820 ORTHO05D005946 1.7e-57 227.6 158 70.9
SHI31234 Sapria himalayana HOM05D004820 ORTHO05D005946 3.0e-54 216.9 114 93.0
HanXRQChr15g0487721 Helianthus annuus HOM05D004820 ORTHO05D005946 2.0e-50 204.1 168 63.1
Zm00001eb426830 Zea mays HOM05D004820 ORTHO05D005946 1.4e-46 191.4 116 85.3
Sopen07g025690 Solanum pennellii HOM05D004820 ORTHO05D005946 1.3e-44 184.9 124 76.6
Os03g0701100 Oryza sativa ssp. japonica HOM05D004820 ORTHO05D005946 4.9e-44 183.0 286 47.9
Lj1g0027313 Lotus japonicus HOM05D004820 ORTHO05D005946 1.1e-43 181.8 159 60.4
MCO06G052 Micromonas commoda HOM05D004820 ORTHO05D005946 1.9e-40 171.0 156 54.5
Sopen07g025610 Solanum pennellii HOM05D004820 ORTHO05D005946 5.6e-40 169.5 252 42.9
Cre13.g567750 Chlamydomonas reinhardtii HOM05D004820 ORTHO05D005946 2.9e-36 157.1 416 35.8
BraA09t42170Z Brassica rapa HOM05D004820 ORTHO05D005946 4.4e-29 133.3 169 55.6
Nitab4.5_0003852g0050 Nicotiana tabacum HOM05D004820 ORTHO05D005946 4.4e-29 133.3 164 48.8
Gohir.D05G222300 Gossypium hirsutum HOM05D004820 ORTHO05D005946 6.4e-28 129.4 62 98.4
Gohir.D11G242500 Gossypium hirsutum HOM05D004820 ORTHO05D005946 1.9e-27 127.9 62 96.8
Gorai.009G229700 Gossypium raimondii HOM05D004820 ORTHO05D005946 1.9e-27 127.9 62 96.8
Gorai.011G187700 Gossypium raimondii HOM05D004820 ORTHO05D005946 9.2e-27 125.6 62 95.2
CARHR182160 Cardamine hirsuta HOM05D004820 ORTHO05D005946 2.0e-26 124.4 110 60.0
Zm00001eb078380 Zea mays HOM05D004820 ORTHO05D005946 2.3e-25 120.9 72 81.9
Zm00001eb180190 Zea mays HOM05D004820 ORTHO05D005946 4.3e-24 116.7 68 83.8
TAR365G1077 Trochodendron aralioides HOM05D004820 ORTHO05D005946 1.1e-22 112.1 97 60.8
Zm00001eb017440 Zea mays HOM05D004820 ORTHO05D005946 1.1e-22 112.1 66 81.8
Zm00001eb368520 Zea mays HOM05D004820 ORTHO05D005946 1.1e-22 112.1 68 80.9
vmacro14915 Vaccinium macrocarpon HOM05D004820 ORTHO05D005946 1.4e-22 111.7 141 60.3
Nitab4.5_0003327g0040 Nicotiana tabacum HOM05D004820 ORTHO05D005946 3.1e-22 110.5 157 45.2
Nn4g23784 Nelumbo nucifera HOM05D004820 ORTHO05D005946 8.6e-17 92.4 108 50.9
Dinv32923 Davidia involucrata HOM05D004820 ORTHO05D005946 4.1e-11 73.6 42 88.1
C06p09790 Brassica napus HOM05D004820 ORTHO05D001418 1.3e-09 68.6 74 51.4
BolC6t36051H Brassica oleracea HOM05D004820 ORTHO05D001418 1.3e-09 68.6 74 51.4
Actinidia10913 Actinidia chinensis HOM05D004820 ORTHO05D005946 2.1e-07 61.2 38 81.6


User provided reference genes

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