Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MSTRG.16763 Avicennia marina HOM05D006779 ORTHO05D008491 1.8e-123 446.0 249 100.0
Migut.B00314 Erythranthe guttata HOM05D006779 ORTHO05D008491 5.4e-91 338.2 263 75.3
SalBow6G0615 Salvia bowleyana HOM05D006779 ORTHO05D008491 6.8e-86 321.2 260 73.8
SGA_v2.0_scaffold90G27688 Striga asiatica HOM05D006779 ORTHO05D008491 1.1e-83 313.9 263 68.8
SGA_v2.0_scaffold90G27693 Striga asiatica HOM05D006779 ORTHO05D008491 1.9e-83 313.2 263 68.8
Oeu064516.1 Olea europaea HOM05D006779 ORTHO05D008491 4.1e-83 312.0 264 68.6
Dinv23582 Davidia involucrata HOM05D006779 ORTHO05D008491 2.4e-75 286.2 265 67.9
Dinv42131 Davidia involucrata HOM05D006779 ORTHO05D008491 1.7e-73 280.0 264 65.9
CSS0011815 Camellia sinensis var. sinensis HOM05D000591 ORTHO05D000579 3.9e-73 278.9 258 62.8
Thecc.02G097400 Theobroma cacao HOM05D006779 ORTHO05D008491 3.9e-73 278.9 246 67.9
Haze_01903 Corylus avellana HOM05D006779 ORTHO05D008491 5.1e-73 278.5 250 67.6
GSVIVG01031784001 Vitis vinifera HOM05D006779 ORTHO05D008491 5.1e-73 278.5 254 67.3
Cc02_g18560 Coffea canephora HOM05D006779 ORTHO05D008491 6.6e-73 278.1 263 66.2
PGSC0003DMG400025811 Solanum tuberosum HOM05D006779 ORTHO05D008491 5.6e-72 275.0 264 64.8
Actinidia00459 Actinidia chinensis HOM05D006779 ORTHO05D008491 7.3e-72 274.6 261 62.5
QL11p037315 Quercus lobata HOM05D006779 ORTHO05D008491 1.6e-71 273.5 250 67.2
Sopen01g050660 Solanum pennellii HOM05D006779 ORTHO05D008491 2.8e-71 272.7 264 64.0
Solyc01g108430.3 Solanum lycopersicum HOM05D006779 ORTHO05D008491 4.7e-71 271.9 264 64.0
PGR142G0644 Punica granatum HOM05D006779 ORTHO05D008491 6.2e-71 271.6 252 65.5
CiPaw.05G054000 Carya illinoinensis HOM05D006779 ORTHO05D008491 8.1e-71 271.2 253 66.0
unitig_60.g25783 Utricularia gibba HOM05D006779 ORTHO05D008491 8.1e-71 271.2 258 65.5
Gohir.A03G191700 Gossypium hirsutum HOM05D006779 ORTHO05D008491 1.8e-70 270.0 248 66.9
Gorai.005G240600 Gossypium raimondii HOM05D006779 ORTHO05D008491 6.9e-70 268.1 249 66.7
Gohir.D02G212600 Gossypium hirsutum HOM05D006779 ORTHO05D008491 2.0e-69 266.5 249 66.3
Eucgr.I01169 Eucalyptus grandis HOM05D006779 ORTHO05D008491 3.4e-69 265.8 252 64.3
Nitab4.5_0004334g0110 Nicotiana tabacum HOM05D006779 ORTHO05D008491 4.4e-69 265.4 264 62.9
vmacro02181 Vaccinium macrocarpon HOM05D006779 ORTHO05D008491 5.8e-69 265.0 295 55.3
Rhsim11G0168500 Rhododendron simsii HOM05D006779 ORTHO05D008491 1.3e-68 263.8 291 55.0
CAN.G322.16 Capsicum annuum HOM05D006779 ORTHO05D008491 1.1e-67 260.8 250 65.2
CsaV3_7G008730 Cucumis sativus L. HOM05D006779 ORTHO05D008491 3.2e-67 259.2 253 63.6
Manes.15G142500 Manihot esculenta HOM05D006779 ORTHO05D008491 4.2e-67 258.8 253 65.2
Sed0011670 Sechium edule HOM05D006779 ORTHO05D008491 4.2e-67 258.8 253 64.0
Nitab4.5_0005583g0020 Nicotiana tabacum HOM05D006779 ORTHO05D008491 5.4e-67 258.5 264 61.7
Potri.009G105500 Populus trichocarpa HOM05D006779 ORTHO05D008491 1.2e-66 257.3 253 65.2
Sabra09G0080600 Salix brachista HOM05D006779 ORTHO05D008491 1.2e-66 257.3 253 65.6
Prupe.8G119200 Prunus persica HOM05D006779 ORTHO05D008491 7.8e-66 254.6 251 64.1
Lj5C207T4 Lonicera japonica HOM05D006779 ORTHO05D008491 1.3e-65 253.8 265 61.5
FvH4_2g06680 Fragaria vesca HOM05D006779 ORTHO05D008491 3.9e-65 252.3 253 61.3
RcHm_v2.0_Chr6g0258731 Rosa chinensis HOM05D006779 ORTHO05D008491 5.1e-65 251.9 253 61.3
FAN24G0787 Fragaria x ananassa HOM05D006779 ORTHO05D008491 6.6e-65 251.5 253 61.3
FAN20G2937 Fragaria x ananassa HOM05D006779 ORTHO05D008491 8.7e-65 251.1 253 61.3
MD05G1075500 Malus domestica HOM05D006779 ORTHO05D008491 8.7e-65 251.1 251 61.8
FAN15G3147 Fragaria x ananassa HOM05D006779 ORTHO05D008491 1.9e-64 250.0 253 60.9
Nn5g30192 Nelumbo nucifera HOM05D006779 ORTHO05D008491 3.3e-64 249.2 262 64.1
COL.COLO4_32686 Corchorus olitorius HOM05D006779 ORTHO05D008491 5.6e-64 248.4 248 64.5
Lalb_Chr09g0328181 Lupinus albus HOM05D006779 ORTHO05D008491 4.8e-63 245.4 249 62.2
Sc18g0004890 Simmondsia chinensis HOM05D006779 ORTHO05D008491 1.1e-62 244.2 251 63.7
Peaxi162Scf00016g01637 Petunia axillaris HOM05D006779 ORTHO05D008491 2.4e-62 243.0 249 63.5
Glyma.01G146900 Glycine max HOM05D006779 ORTHO05D008491 6.9e-62 241.5 249 60.6
Glyma.10G112900 Glycine max HOM05D006779 ORTHO05D008491 6.9e-62 241.5 249 60.6
Ciclev10029963m.g Citrus clementina HOM05D006779 ORTHO05D008491 2.0e-61 240.0 251 62.5
DCAR_029018 Daucus carota HOM05D000144 ORTHO05D003364 4.5e-61 238.8 264 56.4
TWI79G0004 Tripterygium wilfordii HOM05D006779 ORTHO05D008491 5.8e-61 238.4 257 61.5
Phvul.007G247000 Phaseolus vulgaris HOM05D006779 ORTHO05D008491 9.9e-61 237.7 249 57.4
Glyma.02G159500 Glycine max HOM05D006779 ORTHO05D008491 1.7e-60 236.9 249 60.6
Aqoxy6G01411 Aquilegia oxysepala HOM05D006779 ORTHO05D008491 2.2e-60 236.5 262 57.6
Atru.chr5.2773 Acer truncatum HOM05D006779 ORTHO05D008491 3.8e-60 235.7 256 61.3
CANSAT25G0176 Cannabis sativa HOM05D006779 ORTHO05D008491 3.8e-60 235.7 251 60.6
Thhalv10011741m.g Eutrema salsugineum HOM05D006779 ORTHO05D008491 1.4e-59 233.8 252 59.9
Lsat_1_v5_gn_5_113321 Lactuca sativa HOM05D006779 ORTHO05D008491 1.4e-59 233.8 259 56.0
ECA234G4762 Erigeron canadensis HOM05D006779 ORTHO05D008491 1.9e-59 233.4 254 58.3
HPP92_004257 Vanilla planifolia HOM05D006779 ORTHO05D008491 1.9e-59 233.4 262 57.3
MBI02_g21199_MAGBIO Magnolia biondii HOM05D006779 ORTHO05D008491 3.2e-59 232.6 273 57.5
arahy.Tifrunner.gnm1.ann1.8ZG09Z Arachis hypogaea HOM05D006779 ORTHO05D008491 9.3e-59 231.1 251 60.6
Sp1g36470 Schrenkiella parvula HOM05D006779 ORTHO05D008491 1.2e-58 230.7 252 58.7
HanXRQChr10g0303251 Helianthus annuus HOM05D006779 ORTHO05D008491 2.1e-58 229.9 249 59.8
Psat7g121840 Pisum sativum HOM05D006779 ORTHO05D008491 4.6e-58 228.8 251 59.0
TWI31G0027 Tripterygium wilfordii HOM05D006779 ORTHO05D008491 7.9e-58 228.0 257 59.5
arahy.Tifrunner.gnm1.ann1.QJKD6Y Arachis hypogaea HOM05D006779 ORTHO05D008491 5.1e-57 225.3 254 59.8
arahy.Tifrunner.gnm1.ann1.T066AP Arachis hypogaea HOM05D006779 ORTHO05D008491 5.1e-57 225.3 249 60.2
EL10Ac3g06870 Beta vulgaris HOM05D006779 ORTHO05D008491 6.7e-57 224.9 249 59.8
Aa31LG10G4420 Aethionema arabicum HOM05D006779 ORTHO05D008491 1.5e-56 223.8 250 58.4
ClCG02G005780 Citrullus lanatus HOM05D006779 ORTHO05D008491 1.9e-56 223.4 295 53.9
AT1G49590 Arabidopsis thaliana HOM05D006779 ORTHO05D008491 3.3e-56 222.6 252 58.7
AUR62034187 Chenopodium quinoa HOM05D006779 ORTHO05D008491 5.6e-56 221.9 248 57.7
Ca_18655_v3 Cicer arietinum L. HOM05D006779 ORTHO05D008491 7.4e-56 221.5 249 57.8
A06p03540 Brassica napus HOM05D006779 ORTHO05D008491 1.7e-52 210.3 253 55.7
AUR62022456 Chenopodium quinoa HOM05D006779 ORTHO05D008491 1.7e-52 210.3 288 51.0
PSO541G4058 Papaver somniferum HOM05D006779 ORTHO05D008491 2.2e-52 209.9 264 54.9
Ah.04g152710 Amaranthus hybridus HOM05D006779 ORTHO05D008491 6.4e-52 208.4 244 53.7
Hund00325 Selenicereus undatus HOM05D006779 ORTHO05D008491 6.4e-52 208.4 252 57.9
BraA06t23562Z Brassica rapa HOM05D006779 ORTHO05D008491 1.9e-51 206.8 251 55.4
BolC6t35591H Brassica oleracea HOM05D006779 ORTHO05D008491 2.4e-51 206.5 250 55.2
Carub.0001s3879 Capsella rubella HOM05D006779 ORTHO05D008491 1.2e-50 204.1 252 57.1
Lj4g0006122 Lotus japonicus HOM05D006779 ORTHO05D008491 4.6e-50 202.2 249 56.2
PSO675G5018 Papaver somniferum HOM05D006779 ORTHO05D008491 1.3e-49 200.7 264 53.8
CDE06G1966 Ceratophyllum demersum HOM05D006779 ORTHO05D008491 3.9e-49 199.1 248 53.2
Medtr4g086640 Medicago truncatula HOM05D006779 ORTHO05D008491 3.9e-49 199.1 250 55.2
BcaNung06359 Brassica carinata HOM05D006779 ORTHO05D008491 3.3e-48 196.1 254 52.8
AL1G56960 Arabidopsis lyrata HOM05D006779 ORTHO05D008491 7.4e-48 194.9 271 51.7
Zm00001eb373090 Zea mays HOM05D006779 ORTHO05D008491 4.6e-42 175.6 251 53.0
SHI05379 Sapria himalayana HOM05D006779 ORTHO05D008491 1.0e-41 174.5 259 49.0
MELO3C018438.2 Cucumis melo HOM05D006779 ORTHO05D008491 2.3e-41 173.3 207 59.4
Mapoly0157s0003 Marchantia polymorpha HOM05D006779 ORTHO05D008491 6.9e-38 161.8 298 41.9
AagrBONN_evm.TU.Sc2ySwM_344.4302 Anthoceros agrestis HOM05D006779 ORTHO05D008491 7.6e-37 158.3 287 42.5
ATR0097G032 Amborella trichopoda HOM05D006779 ORTHO05D008491 3.2e-35 152.9 239 44.8
C06p04620 Brassica napus HOM05D006779 ORTHO05D008491 3.9e-33 146.0 207 53.6
TAR628G0388 Trochodendron aralioides HOM05D006779 ORTHO05D008491 2.8e-31 139.8 116 64.7
Pp3c14_26080 Physcomitrium patens HOM05D006779 ORTHO05D008491 3.1e-30 136.3 291 39.5
Cpa.g.sc62.36 Carica papaya HOM05D006779 ORTHO05D008491 3.4e-29 132.9 86 74.4
HPP92_004235 Vanilla planifolia HOM05D006779 ORTHO05D008491 3.4e-29 132.9 216 49.1
SMO367G0139 Selaginella moellendorffii HOM05D006779 ORTHO05D008491 1.0e-28 131.3 283 38.5
FAN20G1913 Fragaria x ananassa HOM05D006779 ORTHO05D008491 5.0e-28 129.0 154 58.4
CSS0024784 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 1.1e-27 127.9 191 46.1
CSS0021002 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 2.1e-26 123.6 191 46.1
CBR_g17671 Chara braunii HOM05D006779 ORTHO05D008491 8.8e-25 118.2 333 32.7
CARHR039640 Cardamine hirsuta HOM05D006779 ORTHO05D008491 1.3e-23 114.4 154 57.8
Os06g0215200 Oryza sativa ssp. japonica HOM05D006779 ORTHO05D008491 1.7e-23 114.0 70 78.6
TPR.G23511 Trifolium pratense HOM05D006779 ORTHO05D008491 3.7e-23 112.8 70 77.1
CDE03G0027 Ceratophyllum demersum HOM05D006779 ORTHO05D008491 2.2e-20 103.6 248 39.1
AUR62042088 Chenopodium quinoa HOM05D006779 ORTHO05D008491 3.2e-19 99.8 200 45.0
TPR.G23531 Trifolium pratense HOM05D006779 ORTHO05D008491 3.2e-19 99.8 152 52.6
CSS0005405 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 4.4e-16 89.4 153 42.5
CSS0011003 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 4.4e-16 89.4 153 42.5
CSS0022737 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 9.1e-14 81.6 186 38.2
TAR628G1516 Trochodendron aralioides HOM05D006779 ORTHO05D008491 1.7e-12 77.4 120 48.3
CSS0034996 Camellia sinensis var. sinensis HOM05D006779 ORTHO05D008491 2.5e-11 73.6 191 36.1
EL10Ac9g20940 Beta vulgaris HOM05D002686 ORTHO05D003222 2.2e-07 60.5 70 51.4


User provided reference genes

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